Wall clock time and date at job start Wed Apr 1 2020 04:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47500 * 2 1 4 4 O 1.45199 * 109.47061 * 120.00346 * 2 1 3 5 5 C 1.34226 * 117.00083 * 269.99904 * 4 2 1 6 6 O 1.20824 * 119.99989 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00075 * 179.72365 * 5 4 2 8 8 H 1.08999 * 109.44002 * 60.35725 * 7 5 4 9 9 C 1.53071 * 109.43622 * 180.27595 * 7 5 4 10 10 C 1.53418 * 108.29228 * 168.25393 * 9 7 5 11 11 O 1.42830 * 108.36793 * 295.25363 * 10 9 7 12 12 C 1.35838 * 117.86492 * 49.14622 * 11 10 9 13 13 C 1.39147 * 118.50221 * 162.97776 * 12 11 10 14 14 C 1.37967 * 120.21888 * 179.82191 * 13 12 11 15 15 C 1.38288 * 119.95860 * 359.97438 * 14 13 12 16 16 C 1.38102 * 119.98348 * 0.07399 * 15 14 13 17 17 C 1.38375 * 121.80759 * 342.92664 * 12 11 10 18 18 C 1.50704 * 109.47306 * 240.00100 * 2 1 3 19 19 O 1.21279 * 119.99955 * 256.03882 * 18 2 1 20 20 N 1.34776 * 120.00065 * 76.02802 * 18 2 1 21 21 C 1.46506 * 119.99726 * 5.37208 * 20 18 2 22 22 C 1.46497 * 120.00162 * 185.36508 * 20 18 2 23 23 C 1.50697 * 109.46963 * 90.00506 * 22 20 18 24 24 H 1.08005 * 120.00110 * 0.02562 * 23 22 20 25 25 C 1.37877 * 120.00124 * 180.02562 * 23 22 20 26 26 N 1.31513 * 120.00132 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00037 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47186 * 60.00387 * 27 25 23 29 29 H 1.48500 * 109.47186 * 179.97438 * 27 25 23 30 30 H 1.48492 * 109.47437 * 299.99788 * 27 25 23 31 31 H 1.08997 * 109.47616 * 186.12572 * 1 2 3 32 32 H 1.09000 * 109.46900 * 306.13412 * 1 2 3 33 33 H 1.09002 * 109.46560 * 66.12846 * 1 2 3 34 34 H 1.09000 * 109.70324 * 287.95021 * 9 7 5 35 35 H 1.09004 * 109.70050 * 48.51285 * 9 7 5 36 36 H 1.08997 * 109.68201 * 54.96820 * 10 9 7 37 37 H 1.08996 * 109.68305 * 175.49921 * 10 9 7 38 38 H 1.08008 * 119.88652 * 359.80230 * 13 12 11 39 39 H 1.08001 * 120.02100 * 179.97438 * 14 13 12 40 40 H 1.07996 * 120.00525 * 180.10354 * 15 14 13 41 41 H 1.07995 * 119.84451 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.46862 * 84.81669 * 21 20 18 43 43 H 1.09001 * 109.46773 * 204.81887 * 21 20 18 44 44 H 1.09003 * 109.47088 * 324.81589 * 21 20 18 45 45 H 1.09001 * 109.47106 * 210.00020 * 22 20 18 46 46 H 1.08994 * 109.47379 * 330.00437 * 22 20 18 47 47 H 0.96991 * 120.00194 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0638 2.2811 6 8 1.9974 1.2515 2.2507 7 6 2.7128 -0.5784 3.5511 8 1 3.6834 -1.0400 3.3693 9 6 2.8519 0.4879 4.6404 10 6 3.0674 -0.2213 5.9837 11 8 1.8898 -0.9683 6.2923 12 6 1.3778 -1.7741 5.3260 13 6 0.4726 -2.7636 5.6973 14 6 -0.0722 -3.5994 4.7444 15 6 0.2812 -3.4543 3.4153 16 6 1.1800 -2.4741 3.0432 17 6 1.7318 -1.6334 3.9957 18 6 2.0324 -0.7104 -1.2305 19 8 2.4735 -1.8367 -1.1428 20 7 1.9914 -0.0941 -2.4284 21 6 1.5692 1.3060 -2.5177 22 6 2.3689 -0.8242 -3.6411 23 6 1.1507 -1.4916 -4.2254 24 1 0.1911 -1.3825 -3.7420 25 6 1.2612 -2.2415 -5.3771 26 7 2.4296 -2.3740 -5.9660 27 14 -0.2488 -3.0694 -6.1010 28 1 -1.2636 -2.0394 -6.4396 29 1 0.1338 -3.8093 -7.3303 30 1 -0.8172 -4.0171 -5.1091 31 1 -0.3634 -1.0217 0.1097 32 1 -0.3633 0.6060 0.8300 33 1 -0.3632 0.4159 -0.9398 34 1 3.7069 1.1276 4.4215 35 1 1.9442 1.0898 4.6835 36 1 3.9209 -0.8952 5.9103 37 1 3.2490 0.5177 6.7640 38 1 0.1958 -2.8777 6.7351 39 1 -0.7741 -4.3665 5.0362 40 1 -0.1461 -4.1070 2.6685 41 1 1.4547 -2.3630 2.0047 42 1 2.4232 1.9558 -2.3266 43 1 1.1777 1.5044 -3.5155 44 1 0.7927 1.4993 -1.7776 45 1 2.7862 -0.1283 -4.3689 46 1 3.1136 -1.5804 -3.3929 47 1 2.5072 -2.9012 -6.7764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728358542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:37 Heat of formation + Delta-G solvation = -126.027663 kcal Electronic energy + Delta-G solvation = -31168.954634 eV Core-core repulsion = 26896.517039 eV Total energy + Delta-G solvation = -4272.437595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.49663 -40.31930 -38.96016 -37.72591 -36.59182 -34.93119 -34.68996 -32.85333 -31.65411 -30.86953 -30.35333 -27.83988 -27.08241 -26.09852 -24.64824 -23.99659 -23.08970 -22.39956 -21.30631 -20.02065 -18.89130 -18.41854 -17.61762 -17.07441 -16.84792 -16.56780 -16.46673 -15.90735 -15.69779 -15.26639 -15.06529 -14.74273 -14.44734 -14.28129 -14.05189 -13.76962 -13.53268 -13.31282 -13.24237 -12.84189 -12.75106 -12.40270 -12.19910 -12.17495 -12.10048 -11.78280 -11.72047 -11.46004 -11.38175 -11.26458 -11.17659 -10.96755 -10.88911 -10.71350 -10.62733 -10.51844 -10.20997 -9.71346 -9.00189 -8.96281 -8.48303 -8.37292 -7.76512 -6.09446 -4.15103 1.05355 1.27808 2.04041 2.34835 2.99601 3.18701 3.28849 3.33612 3.36929 3.58499 3.82775 4.08503 4.22001 4.36720 4.39668 4.56582 4.75145 4.77484 4.86575 4.92874 5.00687 5.01158 5.09030 5.14641 5.23364 5.25163 5.27629 5.37079 5.49044 5.58202 5.65141 5.68240 5.70946 5.82537 5.88579 6.04866 6.14405 6.20427 6.27947 6.35721 6.45629 6.61728 6.94540 7.18167 7.35821 7.42263 7.59823 7.86155 8.15776 8.24810 8.79137 8.94277 9.50163 10.98657 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.002735 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.775958 B =10235.986412 C =11305.452023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.068 3.932 3 H 0.103 0.897 4 O -0.321 6.321 5 C 0.474 3.526 6 O -0.504 6.504 7 C -0.034 4.034 8 H 0.122 0.878 9 C -0.146 4.146 10 C 0.064 3.936 11 O -0.316 6.316 12 C 0.141 3.859 13 C -0.156 4.156 14 C -0.080 4.080 15 C -0.150 4.150 16 C -0.074 4.074 17 C -0.168 4.168 18 C 0.510 3.490 19 O -0.520 6.520 20 N -0.596 5.596 21 C 0.073 3.927 22 C 0.246 3.754 23 C -0.531 4.531 24 H 0.058 0.942 25 C 0.062 3.938 26 N -0.894 5.894 27 Si 0.899 3.101 28 H -0.277 1.277 29 H -0.286 1.286 30 H -0.276 1.276 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.153 0.847 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 5.528 23.161 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 H 0.120 0.880 4 O -0.237 6.237 5 C 0.316 3.684 6 O -0.392 6.392 7 C -0.053 4.053 8 H 0.140 0.860 9 C -0.183 4.183 10 C -0.011 4.011 11 O -0.230 6.230 12 C 0.096 3.904 13 C -0.175 4.175 14 C -0.098 4.098 15 C -0.168 4.168 16 C -0.092 4.092 17 C -0.169 4.169 18 C 0.294 3.706 19 O -0.396 6.396 20 N -0.329 5.329 21 C -0.071 4.071 22 C 0.127 3.873 23 C -0.570 4.570 24 H 0.076 0.924 25 C -0.140 4.140 26 N -0.532 5.532 27 Si 0.726 3.274 28 H -0.202 1.202 29 H -0.211 1.211 30 H -0.201 1.201 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.170 0.830 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.155 5.232 23.156 23.768 hybrid contribution -0.711 -0.188 -0.868 1.138 sum -1.866 5.044 22.288 22.928 Atomic orbital electron populations 1.22158 0.92014 1.04199 1.03802 1.22731 0.96152 0.97451 0.82730 0.87953 1.86621 1.76386 1.41027 1.19623 1.23335 0.74099 0.85715 0.85227 1.90641 1.47834 1.16450 1.84263 1.19913 1.00049 0.95315 0.90034 0.86023 1.22195 1.05615 0.97283 0.93229 1.23007 0.86048 0.94761 0.97264 1.85987 1.42745 1.56071 1.38232 1.18618 0.94676 0.90680 0.86402 1.20544 1.00568 0.95790 1.00569 1.21028 0.98207 0.97851 0.92742 1.21140 0.99651 0.99715 0.96299 1.21660 0.94161 0.92693 1.00674 1.19320 1.03918 1.00691 0.93012 1.19744 0.80207 0.86839 0.83769 1.90696 1.45218 1.18364 1.85335 1.48081 1.65214 1.11906 1.07724 1.21840 0.98996 0.82655 1.03580 1.19364 0.96691 0.92054 0.79142 1.21383 0.94743 1.31595 1.09266 0.92403 1.24934 0.96265 0.96092 0.96705 1.69916 1.23239 1.40361 1.19695 0.86545 0.82748 0.79641 0.78421 1.20209 1.21129 1.20109 0.90588 0.91301 0.89439 0.88690 0.88973 0.91332 0.86774 0.85174 0.85309 0.85361 0.82973 0.93424 0.90035 0.92253 0.94650 0.93562 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.19 37.16 0.34 -1.99 16 2 C 0.07 1.10 2.14 -27.88 -0.06 1.04 16 3 H 0.10 1.54 6.31 -51.93 -0.33 1.21 16 4 O -0.32 -5.13 6.56 -45.74 -0.30 -5.43 16 5 C 0.47 6.64 7.04 36.01 0.25 6.89 16 6 O -0.50 -7.68 15.00 -18.75 -0.28 -7.96 16 7 C -0.03 -0.38 2.83 -92.85 -0.26 -0.64 16 8 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 9 C -0.15 -1.28 4.96 -26.48 -0.13 -1.42 16 10 C 0.06 0.47 7.03 37.37 0.26 0.73 16 11 O -0.32 -3.29 10.27 -19.23 -0.20 -3.49 16 12 C 0.14 1.62 6.47 -39.19 -0.25 1.36 16 13 C -0.16 -1.62 9.94 -39.34 -0.39 -2.01 16 14 C -0.08 -0.79 10.04 -39.66 -0.40 -1.19 16 15 C -0.15 -1.72 10.04 -39.61 -0.40 -2.12 16 16 C -0.07 -0.97 9.01 -39.53 -0.36 -1.32 16 17 C -0.17 -2.03 5.43 -104.44 -0.57 -2.60 16 18 C 0.51 10.67 6.95 -10.98 -0.08 10.59 16 19 O -0.52 -13.07 16.13 -13.54 -0.22 -13.29 16 20 N -0.60 -12.46 2.86 -182.95 -0.52 -12.98 16 21 C 0.07 1.14 9.79 59.85 0.59 1.73 16 22 C 0.25 6.33 5.18 -5.20 -0.03 6.30 16 23 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 24 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 25 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 26 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 27 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 28 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 30 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.18 6.33 -51.93 -0.33 0.85 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.95 7.71 -51.93 -0.40 0.55 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.15 2.25 5.32 -52.49 -0.28 1.97 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 44 H 0.06 0.77 4.92 -51.93 -0.26 0.52 16 45 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 46 H 0.05 1.35 7.35 -51.93 -0.38 0.96 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -34.21 387.18 -8.45 -42.66 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.58 Total: 1.68 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.90 Total: 1.98 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.21 Total: -38.43 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -1.00 Total: -30.17 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.21 -8.45 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728358542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.366 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds