Wall clock time and date at job start Wed Apr 1 2020 04:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47500 * 2 1 4 4 O 1.45199 * 109.47061 * 120.00346 * 2 1 3 5 5 C 1.34226 * 117.00083 * 269.99904 * 4 2 1 6 6 O 1.20824 * 119.99989 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00075 * 179.72365 * 5 4 2 8 8 H 1.08999 * 109.44002 * 60.35725 * 7 5 4 9 9 C 1.53071 * 109.43622 * 180.27595 * 7 5 4 10 10 C 1.53418 * 108.29228 * 168.25393 * 9 7 5 11 11 O 1.42830 * 108.36793 * 295.25363 * 10 9 7 12 12 C 1.35838 * 117.86492 * 49.14622 * 11 10 9 13 13 C 1.39147 * 118.50221 * 162.97776 * 12 11 10 14 14 C 1.37967 * 120.21888 * 179.82191 * 13 12 11 15 15 C 1.38288 * 119.95860 * 359.97438 * 14 13 12 16 16 C 1.38102 * 119.98348 * 0.07399 * 15 14 13 17 17 C 1.38375 * 121.80759 * 342.92664 * 12 11 10 18 18 C 1.50704 * 109.47306 * 240.00100 * 2 1 3 19 19 O 1.21279 * 119.99955 * 256.03882 * 18 2 1 20 20 N 1.34776 * 120.00065 * 76.02802 * 18 2 1 21 21 C 1.46506 * 119.99726 * 5.37208 * 20 18 2 22 22 C 1.46497 * 120.00162 * 185.36508 * 20 18 2 23 23 C 1.50697 * 109.46963 * 90.00506 * 22 20 18 24 24 H 1.08005 * 120.00110 * 0.02562 * 23 22 20 25 25 C 1.37877 * 120.00124 * 180.02562 * 23 22 20 26 26 N 1.31513 * 120.00132 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00037 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47186 * 60.00387 * 27 25 23 29 29 H 1.48500 * 109.47186 * 179.97438 * 27 25 23 30 30 H 1.48492 * 109.47437 * 299.99788 * 27 25 23 31 31 H 1.08997 * 109.47616 * 186.12572 * 1 2 3 32 32 H 1.09000 * 109.46900 * 306.13412 * 1 2 3 33 33 H 1.09002 * 109.46560 * 66.12846 * 1 2 3 34 34 H 1.09000 * 109.70324 * 287.95021 * 9 7 5 35 35 H 1.09004 * 109.70050 * 48.51285 * 9 7 5 36 36 H 1.08997 * 109.68201 * 54.96820 * 10 9 7 37 37 H 1.08996 * 109.68305 * 175.49921 * 10 9 7 38 38 H 1.08008 * 119.88652 * 359.80230 * 13 12 11 39 39 H 1.08001 * 120.02100 * 179.97438 * 14 13 12 40 40 H 1.07996 * 120.00525 * 180.10354 * 15 14 13 41 41 H 1.07995 * 119.84451 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.46862 * 84.81669 * 21 20 18 43 43 H 1.09001 * 109.46773 * 204.81887 * 21 20 18 44 44 H 1.09003 * 109.47088 * 324.81589 * 21 20 18 45 45 H 1.09001 * 109.47106 * 210.00020 * 22 20 18 46 46 H 1.08994 * 109.47379 * 330.00437 * 22 20 18 47 47 H 0.96991 * 120.00194 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0638 2.2811 6 8 1.9974 1.2515 2.2507 7 6 2.7128 -0.5784 3.5511 8 1 3.6834 -1.0400 3.3693 9 6 2.8519 0.4879 4.6404 10 6 3.0674 -0.2213 5.9837 11 8 1.8898 -0.9683 6.2923 12 6 1.3778 -1.7741 5.3260 13 6 0.4726 -2.7636 5.6973 14 6 -0.0722 -3.5994 4.7444 15 6 0.2812 -3.4543 3.4153 16 6 1.1800 -2.4741 3.0432 17 6 1.7318 -1.6334 3.9957 18 6 2.0324 -0.7104 -1.2305 19 8 2.4735 -1.8367 -1.1428 20 7 1.9914 -0.0941 -2.4284 21 6 1.5692 1.3060 -2.5177 22 6 2.3689 -0.8242 -3.6411 23 6 1.1507 -1.4916 -4.2254 24 1 0.1911 -1.3825 -3.7420 25 6 1.2612 -2.2415 -5.3771 26 7 2.4296 -2.3740 -5.9660 27 14 -0.2488 -3.0694 -6.1010 28 1 -1.2636 -2.0394 -6.4396 29 1 0.1338 -3.8093 -7.3303 30 1 -0.8172 -4.0171 -5.1091 31 1 -0.3634 -1.0217 0.1097 32 1 -0.3633 0.6060 0.8300 33 1 -0.3632 0.4159 -0.9398 34 1 3.7069 1.1276 4.4215 35 1 1.9442 1.0898 4.6835 36 1 3.9209 -0.8952 5.9103 37 1 3.2490 0.5177 6.7640 38 1 0.1958 -2.8777 6.7351 39 1 -0.7741 -4.3665 5.0362 40 1 -0.1461 -4.1070 2.6685 41 1 1.4547 -2.3630 2.0047 42 1 2.4232 1.9558 -2.3266 43 1 1.1777 1.5044 -3.5155 44 1 0.7927 1.4993 -1.7776 45 1 2.7862 -0.1283 -4.3689 46 1 3.1136 -1.5804 -3.3929 47 1 2.5072 -2.9012 -6.7764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728358542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:36 Heat of formation + Delta-G solvation = -145.504241 kcal Electronic energy + Delta-G solvation = -31169.799202 eV Core-core repulsion = 26896.517039 eV Total energy + Delta-G solvation = -4273.282163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.48891 -41.40026 -40.47260 -38.52885 -37.81090 -36.70467 -35.55211 -34.85494 -33.04972 -31.64444 -31.18496 -29.73440 -27.95829 -27.57978 -26.07950 -25.03301 -24.35142 -23.56271 -22.41992 -20.86937 -20.44756 -19.42503 -18.70326 -18.58537 -18.22787 -17.87898 -17.51615 -17.29760 -16.76320 -16.73082 -16.22971 -16.08575 -15.91266 -15.37008 -14.86414 -14.83304 -14.75950 -14.35933 -14.28402 -14.21525 -14.05158 -13.67070 -13.59150 -13.50972 -13.32426 -13.14719 -12.97693 -12.84863 -12.71059 -12.55752 -12.46659 -12.20567 -12.15924 -11.99821 -11.94337 -11.75182 -11.70853 -11.47534 -10.66089 -10.64971 -9.85487 -9.54418 -9.19670 -8.23991 -6.39062 0.20482 0.41570 0.93816 1.18994 1.37469 1.41579 1.48254 1.57511 2.25966 2.32654 2.41644 2.75960 3.06290 3.23816 3.35665 3.39363 3.54736 3.68838 3.75788 3.79120 4.03822 4.08278 4.20384 4.25221 4.35428 4.43712 4.49121 4.50673 4.52487 4.58319 4.61331 4.63231 4.82526 4.87062 4.92096 4.99601 5.03376 5.04488 5.17975 5.21920 5.30264 5.44091 5.49794 5.60353 5.76524 5.80085 6.01843 6.40621 6.43600 6.58598 6.69661 7.17299 7.34324 8.83461 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.002735 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.775958 B =10235.986412 C =11305.452023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.078 3.922 3 H 0.121 0.879 4 O -0.335 6.335 5 C 0.473 3.527 6 O -0.516 6.516 7 C -0.035 4.035 8 H 0.134 0.866 9 C -0.140 4.140 10 C 0.062 3.938 11 O -0.324 6.324 12 C 0.135 3.865 13 C -0.159 4.159 14 C -0.074 4.074 15 C -0.163 4.163 16 C -0.096 4.096 17 C -0.179 4.179 18 C 0.503 3.497 19 O -0.575 6.575 20 N -0.600 5.600 21 C 0.067 3.933 22 C 0.259 3.741 23 C -0.546 4.546 24 H 0.058 0.942 25 C 0.009 3.991 26 N -0.928 5.928 27 Si 0.968 3.032 28 H -0.259 1.259 29 H -0.280 1.280 30 H -0.276 1.276 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.030 0.970 46 H 0.000 1.000 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.817 6.568 25.202 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 H 0.138 0.862 4 O -0.251 6.251 5 C 0.317 3.683 6 O -0.405 6.405 7 C -0.054 4.054 8 H 0.152 0.848 9 C -0.177 4.177 10 C -0.013 4.013 11 O -0.238 6.238 12 C 0.090 3.910 13 C -0.177 4.177 14 C -0.092 4.092 15 C -0.181 4.181 16 C -0.113 4.113 17 C -0.180 4.180 18 C 0.290 3.710 19 O -0.455 6.455 20 N -0.332 5.332 21 C -0.075 4.075 22 C 0.139 3.861 23 C -0.584 4.584 24 H 0.076 0.924 25 C -0.190 4.190 26 N -0.568 5.568 27 Si 0.792 3.208 28 H -0.183 1.183 29 H -0.205 1.205 30 H -0.202 1.202 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.131 0.869 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.176 0.824 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.048 0.952 46 H 0.019 0.981 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.628 6.332 25.214 26.129 hybrid contribution -0.192 -0.487 -1.447 1.539 sum -2.820 5.844 23.767 24.636 Atomic orbital electron populations 1.22147 0.90178 1.04072 1.05113 1.22568 0.97264 0.97111 0.81046 0.86156 1.86679 1.76684 1.41715 1.19975 1.23934 0.73470 0.85610 0.85309 1.90619 1.48510 1.16899 1.84434 1.20101 1.00199 0.95923 0.89129 0.84836 1.22211 1.05653 0.96660 0.93200 1.23306 0.85419 0.95310 0.97215 1.85980 1.43816 1.56040 1.37966 1.18784 0.94895 0.91086 0.86244 1.20897 0.99878 0.95238 1.01721 1.21330 0.98016 0.98116 0.91736 1.21301 0.99692 0.99621 0.97493 1.21557 0.95721 0.94245 0.99813 1.19378 1.04367 1.00860 0.93353 1.20566 0.79073 0.86399 0.84998 1.90660 1.47554 1.20931 1.86321 1.48061 1.64929 1.13770 1.06477 1.22150 1.00988 0.79677 1.04692 1.18856 0.95207 0.91264 0.80800 1.21672 0.95161 1.32028 1.09567 0.92350 1.25860 0.99412 0.96617 0.97139 1.70041 1.25429 1.41109 1.20182 0.85464 0.79100 0.78755 0.77497 1.18342 1.20494 1.20184 0.91696 0.89270 0.88494 0.86931 0.90443 0.89959 0.83750 0.83070 0.82402 0.85052 0.85439 0.90911 0.90093 0.89193 0.95247 0.98145 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 9.19 71.98 0.66 -3.66 16 2 C 0.08 2.53 2.14 29.85 0.06 2.59 16 3 H 0.12 3.44 6.31 -2.39 -0.02 3.43 16 4 O -0.33 -10.90 6.56 -45.18 -0.30 -11.20 16 5 C 0.47 13.09 7.04 71.24 0.50 13.59 16 6 O -0.52 -15.11 15.00 21.97 0.33 -14.78 16 7 C -0.03 -0.75 2.83 -12.24 -0.03 -0.78 16 8 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 9 C -0.14 -2.21 4.96 30.76 0.15 -2.05 16 10 C 0.06 0.74 7.03 72.12 0.51 1.25 16 11 O -0.32 -6.01 10.27 -91.74 -0.94 -6.95 16 12 C 0.14 2.90 6.47 22.52 0.15 3.05 16 13 C -0.16 -2.98 9.94 22.42 0.22 -2.75 16 14 C -0.07 -1.35 10.04 22.22 0.22 -1.13 16 15 C -0.16 -3.74 10.04 22.25 0.22 -3.52 16 16 C -0.10 -2.55 9.01 22.30 0.20 -2.35 16 17 C -0.18 -4.25 5.43 -19.74 -0.11 -4.35 16 18 C 0.50 21.65 6.95 87.66 0.61 22.26 16 19 O -0.58 -30.58 16.13 15.23 0.25 -30.34 16 20 N -0.60 -25.53 2.86 -851.13 -2.43 -27.96 16 21 C 0.07 1.99 9.79 127.77 1.25 3.24 16 22 C 0.26 13.92 5.18 85.63 0.44 14.36 16 23 C -0.55 -30.92 9.39 25.60 0.24 -30.68 16 24 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 25 C 0.01 0.51 5.46 84.65 0.46 0.97 16 26 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 27 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 28 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 29 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 30 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.10 2.44 6.33 -2.39 -0.02 2.43 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.48 7.71 -2.38 -0.02 1.46 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.13 4.04 5.32 -2.91 -0.02 4.02 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 43 H 0.08 2.44 8.03 -2.39 -0.02 2.42 16 44 H 0.09 2.13 4.92 -2.39 -0.01 2.11 16 45 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 46 H 0.00 0.03 7.35 -2.39 -0.02 0.01 16 47 H 0.27 15.11 8.31 -92.72 -0.77 14.34 16 Total: -1.00 -77.41 387.18 5.97 -71.44 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.99 Total: 19.00 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 5.77 Total: 10.03 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -2.15 Total: -83.41 kcal Atomic # 8 Polarization: -62.61 SS G_CDS: -0.66 Total: -63.27 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -77.41 5.97 -71.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728358542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.068 kcal (2) G-P(sol) polarization free energy of solvation -77.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds