Wall clock time and date at job start Wed Apr 1 2020 04:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99800 * 2 1 4 4 O 1.42895 * 109.47351 * 134.99527 * 3 2 1 5 5 C 1.42897 * 114.00104 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.47210 * 180.02562 * 5 4 3 7 7 O 1.20822 * 120.00070 * 359.97438 * 6 5 4 8 8 O 1.34227 * 119.99757 * 180.02562 * 6 5 4 9 9 C 1.45201 * 116.99634 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47244 * 30.00143 * 9 8 6 11 11 C 1.53004 * 109.47321 * 269.99474 * 9 8 6 12 12 C 1.50705 * 109.46873 * 149.99782 * 9 8 6 13 13 O 1.21283 * 120.00179 * 18.44190 * 12 9 8 14 14 N 1.34781 * 119.99726 * 198.16553 * 12 9 8 15 15 C 1.46503 * 120.00006 * 354.00029 * 14 12 9 16 16 C 1.50701 * 109.46924 * 95.96841 * 15 14 12 17 17 H 1.07998 * 120.00303 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99571 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00410 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99664 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46681 * 90.00516 * 20 18 16 22 22 H 1.48499 * 109.47014 * 210.00208 * 20 18 16 23 23 H 1.48493 * 109.47202 * 330.00422 * 20 18 16 24 24 C 1.39921 * 119.99848 * 173.99983 * 14 12 9 25 25 C 1.38878 * 120.07007 * 171.54582 * 24 14 12 26 26 C 1.38112 * 119.92649 * 179.79338 * 25 24 14 27 27 C 1.38284 * 120.07367 * 0.48608 * 26 25 24 28 28 C 1.38284 * 120.13844 * 359.74667 * 27 26 25 29 29 C 1.38110 * 120.07073 * 0.02562 * 28 27 26 30 30 H 1.08006 * 119.99856 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00636 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00191 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47191 * 14.99319 * 3 2 1 34 34 H 1.09000 * 109.46675 * 254.99734 * 3 2 1 35 35 H 1.09002 * 109.47324 * 60.00026 * 5 4 3 36 36 H 1.09009 * 109.46954 * 299.99955 * 5 4 3 37 37 H 1.08998 * 109.47031 * 306.14854 * 11 9 8 38 38 H 1.09002 * 109.46652 * 66.14067 * 11 9 8 39 39 H 1.08999 * 109.47447 * 186.13955 * 11 9 8 40 40 H 1.09001 * 109.46673 * 215.96548 * 15 14 12 41 41 H 1.08993 * 109.47135 * 335.96669 * 15 14 12 42 42 H 0.96995 * 120.00116 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.03759 * 0.02862 * 25 24 14 44 44 H 1.08004 * 119.96174 * 180.23586 * 26 25 24 45 45 H 1.08000 * 119.93089 * 179.72551 * 27 26 25 46 46 H 1.07996 * 119.96130 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.03713 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2415 0.9527 5 6 3.9082 2.4351 1.0321 6 6 4.9945 2.2567 2.0613 7 8 5.0892 1.2146 2.6653 8 8 5.8561 3.2560 2.3078 9 6 6.8762 3.0141 3.3124 10 1 7.1235 1.9527 3.3308 11 6 6.3511 3.4393 4.6852 12 6 8.1102 3.8117 2.9774 13 8 8.0367 4.7499 2.2123 14 7 9.2944 3.4859 3.5325 15 6 9.3598 2.4432 4.5595 16 6 9.7301 1.1302 3.9192 17 1 9.9002 1.0777 2.8540 18 6 9.8529 -0.0040 4.6937 19 7 9.6463 0.0600 5.9909 20 14 10.3112 -1.6317 3.9000 21 1 11.7889 -1.7791 3.8906 22 1 9.7074 -2.7467 4.6730 23 1 9.8018 -1.6633 2.5055 24 6 10.4612 4.1436 3.1278 25 6 11.6500 3.9382 3.8158 26 6 12.8010 4.5856 3.4112 27 6 12.7683 5.4453 2.3285 28 6 11.5851 5.6557 1.6444 29 6 10.4318 5.0077 2.0411 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3854 2.1161 0.2659 34 1 2.4755 1.4867 -0.9927 35 1 3.2687 3.2698 1.3191 36 1 4.3586 2.6397 0.0607 37 1 6.0020 4.4708 4.6371 38 1 5.5255 2.7896 4.9756 39 1 7.1516 3.3605 5.4208 40 1 10.1123 2.7107 5.3013 41 1 8.3884 2.3496 5.0447 42 1 9.7331 -0.7378 6.5357 43 1 11.6753 3.2700 4.6638 44 1 13.7266 4.4233 3.9434 45 1 13.6687 5.9538 2.0169 46 1 11.5630 6.3274 0.7991 47 1 9.5079 5.1728 1.5067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729763346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:41 Heat of formation + Delta-G solvation = -90.823901 kcal Electronic energy + Delta-G solvation = -30511.066344 eV Core-core repulsion = 26240.155298 eV Total energy + Delta-G solvation = -4270.911046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.78964 -39.97478 -38.37129 -37.77208 -36.16727 -35.42051 -34.14748 -32.74735 -32.05824 -30.36003 -29.30826 -28.75025 -27.40173 -25.95613 -24.58680 -23.40530 -22.46707 -21.51327 -20.77670 -20.21735 -19.25037 -17.91103 -17.07272 -16.97998 -16.81555 -16.62897 -16.39063 -16.22325 -15.60893 -15.41647 -14.93180 -14.70498 -14.47166 -14.11889 -13.78795 -13.66580 -13.40076 -13.11203 -12.89474 -12.83536 -12.54176 -12.46043 -12.30081 -12.15055 -12.01225 -11.65193 -11.30292 -11.29770 -11.16251 -11.11421 -10.74792 -10.64402 -10.50593 -10.33318 -10.26788 -10.23266 -10.14174 -9.65451 -9.24206 -8.84889 -8.62905 -8.37579 -7.27188 -6.28807 -4.37567 1.73668 1.79792 1.96645 2.24124 2.32086 3.04065 3.21645 3.28894 3.33035 3.45202 3.88428 4.26867 4.44321 4.62022 4.72968 4.76019 4.78946 4.89209 4.93364 5.05150 5.05537 5.17196 5.21361 5.41383 5.43048 5.49293 5.54182 5.66504 5.84892 5.90179 6.00314 6.06947 6.09869 6.23713 6.25486 6.29792 6.47385 6.55280 6.69628 6.74175 6.83351 6.94537 7.02482 7.09245 7.20774 7.63162 7.71223 7.84317 7.87282 7.97739 8.51284 8.70618 9.31377 10.77782 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.003162 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.653689 B = 8853.269872 C =10805.044032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.088 3.912 4 O -0.363 6.363 5 C 0.075 3.925 6 C 0.455 3.545 7 O -0.475 6.475 8 O -0.333 6.333 9 C 0.076 3.924 10 H 0.132 0.868 11 C -0.166 4.166 12 C 0.523 3.477 13 O -0.524 6.524 14 N -0.529 5.529 15 C 0.216 3.784 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.072 3.928 19 N -0.887 5.887 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.173 3.827 25 C -0.141 4.141 26 C -0.103 4.103 27 C -0.160 4.160 28 C -0.107 4.107 29 C -0.173 4.173 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.268 0.732 43 H 0.136 0.864 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.115 0.885 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.072 6.786 -8.123 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.167 4.167 3 C 0.012 3.988 4 O -0.282 6.282 5 C -0.002 4.002 6 C 0.296 3.704 7 O -0.359 6.359 8 O -0.250 6.250 9 C 0.018 3.982 10 H 0.149 0.851 11 C -0.224 4.224 12 C 0.312 3.688 13 O -0.402 6.402 14 N -0.250 5.250 15 C 0.097 3.903 16 C -0.583 4.583 17 H 0.081 0.919 18 C -0.133 4.133 19 N -0.524 5.524 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.196 1.196 24 C 0.078 3.922 25 C -0.162 4.162 26 C -0.122 4.122 27 C -0.179 4.179 28 C -0.126 4.126 29 C -0.192 4.192 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.154 0.846 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.118 6.617 -7.969 14.480 hybrid contribution 0.425 -1.053 -0.317 1.179 sum -9.693 5.564 -8.286 13.913 Atomic orbital electron populations 1.23836 0.95460 1.02335 1.00055 1.22726 0.95623 0.98219 1.00162 1.21635 0.88438 0.96383 0.92298 1.88010 1.44506 1.34859 1.60816 1.21618 0.91635 0.89307 0.97661 1.23114 0.82308 0.82119 0.82896 1.90753 1.70106 1.27607 1.47451 1.86467 1.40186 1.42105 1.56218 1.22574 0.84900 1.03499 0.87221 0.85095 1.22246 1.03449 1.02420 0.94245 1.20084 0.84237 0.83943 0.80566 1.90374 1.85066 1.28779 1.36028 1.45884 1.04010 1.36278 1.38791 1.20002 1.00126 0.84282 0.85847 1.21331 1.49590 0.92416 0.95010 0.91859 1.24886 0.94390 0.99246 0.94739 1.69890 1.47854 1.30114 1.04526 0.86458 0.78714 0.82581 0.79654 1.20324 1.20821 1.19638 1.17974 0.86341 0.93661 0.94234 1.21053 0.91492 1.02049 1.01566 1.20858 0.97429 0.96838 0.97091 1.20983 0.97771 1.01141 0.97987 1.20987 0.92558 0.99646 0.99414 1.22384 1.01392 0.98250 0.97194 0.87676 0.88389 0.86273 0.92268 0.91742 0.88765 0.88688 0.91292 0.90669 0.88780 0.93242 0.92654 0.92213 0.84613 0.86396 0.87043 0.86689 0.81414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 14.31 29.02 0.42 -0.88 16 2 C -0.15 -1.34 9.89 -36.02 -0.36 -1.70 16 3 C 0.09 0.79 6.35 36.01 0.23 1.02 16 4 O -0.36 -4.74 9.86 -55.18 -0.54 -5.28 16 5 C 0.08 0.87 6.53 36.01 0.24 1.11 16 6 C 0.46 7.53 8.01 36.01 0.29 7.82 16 7 O -0.47 -9.65 15.72 -25.47 -0.40 -10.05 16 8 O -0.33 -5.84 9.48 -45.69 -0.43 -6.28 16 9 C 0.08 1.45 2.14 -27.88 -0.06 1.39 16 10 H 0.13 2.85 6.24 -51.93 -0.32 2.52 16 11 C -0.17 -2.74 9.15 37.16 0.34 -2.40 16 12 C 0.52 10.85 6.86 -10.98 -0.08 10.78 16 13 O -0.52 -11.21 13.13 -13.35 -0.18 -11.38 16 14 N -0.53 -11.36 2.69 -114.73 -0.31 -11.66 16 15 C 0.22 4.97 4.20 -5.19 -0.02 4.95 16 16 C -0.55 -14.06 9.05 -34.44 -0.31 -14.37 16 17 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 18 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 19 N -0.89 -23.83 13.29 55.43 0.74 -23.10 16 20 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.17 3.59 6.45 -83.69 -0.54 3.05 16 25 C -0.14 -2.73 9.27 -39.39 -0.36 -3.10 16 26 C -0.10 -1.70 10.04 -39.61 -0.40 -2.10 16 27 C -0.16 -2.46 10.04 -39.55 -0.40 -2.86 16 28 C -0.11 -1.76 10.04 -39.61 -0.40 -2.16 16 29 C -0.17 -3.34 8.96 -39.39 -0.35 -3.69 16 30 H 0.10 0.64 8.06 -52.48 -0.42 0.22 16 31 H 0.10 0.58 7.90 -52.49 -0.41 0.17 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.06 0.42 7.86 -51.93 -0.41 0.01 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.88 8.14 -51.92 -0.42 0.45 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.59 5.92 -51.93 -0.31 1.28 16 40 H 0.05 1.17 6.23 -51.93 -0.32 0.85 16 41 H 0.06 1.27 4.36 -51.93 -0.23 1.04 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.14 2.73 6.13 -52.49 -0.32 2.41 16 44 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 45 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 46 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 47 H 0.17 3.41 4.76 -54.97 -0.26 3.15 16 LS Contribution 398.29 15.07 6.00 6.00 Total: -1.00 -31.20 398.29 -8.37 -39.57 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.36 Total: 7.68 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.87 Total: -1.38 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.43 Total: -34.76 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.55 Total: -33.00 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.20 -8.37 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729763346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.254 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds