Wall clock time and date at job start Wed Apr 1 2020 04:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99800 * 2 1 4 4 O 1.42895 * 109.47351 * 134.99527 * 3 2 1 5 5 C 1.42897 * 114.00104 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.47210 * 180.02562 * 5 4 3 7 7 O 1.20822 * 120.00070 * 359.97438 * 6 5 4 8 8 O 1.34227 * 119.99757 * 180.02562 * 6 5 4 9 9 C 1.45201 * 116.99634 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47244 * 30.00143 * 9 8 6 11 11 C 1.53004 * 109.47321 * 269.99474 * 9 8 6 12 12 C 1.50705 * 109.46873 * 149.99782 * 9 8 6 13 13 O 1.21283 * 120.00179 * 18.44190 * 12 9 8 14 14 N 1.34781 * 119.99726 * 198.16553 * 12 9 8 15 15 C 1.46503 * 120.00006 * 354.00029 * 14 12 9 16 16 C 1.50701 * 109.46924 * 95.96841 * 15 14 12 17 17 H 1.07998 * 120.00303 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99571 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00410 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99664 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46681 * 90.00516 * 20 18 16 22 22 H 1.48499 * 109.47014 * 210.00208 * 20 18 16 23 23 H 1.48493 * 109.47202 * 330.00422 * 20 18 16 24 24 C 1.39921 * 119.99848 * 173.99983 * 14 12 9 25 25 C 1.38878 * 120.07007 * 171.54582 * 24 14 12 26 26 C 1.38112 * 119.92649 * 179.79338 * 25 24 14 27 27 C 1.38284 * 120.07367 * 0.48608 * 26 25 24 28 28 C 1.38284 * 120.13844 * 359.74667 * 27 26 25 29 29 C 1.38110 * 120.07073 * 0.02562 * 28 27 26 30 30 H 1.08006 * 119.99856 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00636 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00191 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47191 * 14.99319 * 3 2 1 34 34 H 1.09000 * 109.46675 * 254.99734 * 3 2 1 35 35 H 1.09002 * 109.47324 * 60.00026 * 5 4 3 36 36 H 1.09009 * 109.46954 * 299.99955 * 5 4 3 37 37 H 1.08998 * 109.47031 * 306.14854 * 11 9 8 38 38 H 1.09002 * 109.46652 * 66.14067 * 11 9 8 39 39 H 1.08999 * 109.47447 * 186.13955 * 11 9 8 40 40 H 1.09001 * 109.46673 * 215.96548 * 15 14 12 41 41 H 1.08993 * 109.47135 * 335.96669 * 15 14 12 42 42 H 0.96995 * 120.00116 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.03759 * 0.02862 * 25 24 14 44 44 H 1.08004 * 119.96174 * 180.23586 * 26 25 24 45 45 H 1.08000 * 119.93089 * 179.72551 * 27 26 25 46 46 H 1.07996 * 119.96130 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.03713 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2415 0.9527 5 6 3.9082 2.4351 1.0321 6 6 4.9945 2.2567 2.0613 7 8 5.0892 1.2146 2.6653 8 8 5.8561 3.2560 2.3078 9 6 6.8762 3.0141 3.3124 10 1 7.1235 1.9527 3.3308 11 6 6.3511 3.4393 4.6852 12 6 8.1102 3.8117 2.9774 13 8 8.0367 4.7499 2.2123 14 7 9.2944 3.4859 3.5325 15 6 9.3598 2.4432 4.5595 16 6 9.7301 1.1302 3.9192 17 1 9.9002 1.0777 2.8540 18 6 9.8529 -0.0040 4.6937 19 7 9.6463 0.0600 5.9909 20 14 10.3112 -1.6317 3.9000 21 1 11.7889 -1.7791 3.8906 22 1 9.7074 -2.7467 4.6730 23 1 9.8018 -1.6633 2.5055 24 6 10.4612 4.1436 3.1278 25 6 11.6500 3.9382 3.8158 26 6 12.8010 4.5856 3.4112 27 6 12.7683 5.4453 2.3285 28 6 11.5851 5.6557 1.6444 29 6 10.4318 5.0077 2.0411 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3854 2.1161 0.2659 34 1 2.4755 1.4867 -0.9927 35 1 3.2687 3.2698 1.3191 36 1 4.3586 2.6397 0.0607 37 1 6.0020 4.4708 4.6371 38 1 5.5255 2.7896 4.9756 39 1 7.1516 3.3605 5.4208 40 1 10.1123 2.7107 5.3013 41 1 8.3884 2.3496 5.0447 42 1 9.7331 -0.7378 6.5357 43 1 11.6753 3.2700 4.6638 44 1 13.7266 4.4233 3.9434 45 1 13.6687 5.9538 2.0169 46 1 11.5630 6.3274 0.7991 47 1 9.5079 5.1728 1.5067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729763346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:40 Heat of formation + Delta-G solvation = -106.640491 kcal Electronic energy + Delta-G solvation = -30511.752202 eV Core-core repulsion = 26240.155298 eV Total energy + Delta-G solvation = -4271.596904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.28355 -41.40703 -39.47730 -39.00746 -37.57633 -37.10286 -34.82630 -34.70365 -33.49312 -31.76167 -30.72224 -29.80966 -29.23190 -26.73851 -26.03536 -25.19639 -23.87315 -22.92283 -22.08600 -20.93712 -20.78549 -19.18853 -18.86838 -18.33118 -18.28658 -17.88461 -17.65159 -17.40425 -16.84555 -16.73919 -16.38636 -16.21128 -15.93765 -15.39198 -15.14434 -14.80975 -14.76041 -14.54120 -14.32333 -14.19307 -13.97461 -13.68284 -13.54355 -13.34681 -13.24732 -13.18438 -13.07374 -12.86208 -12.59581 -12.42476 -12.29207 -12.07735 -11.97083 -11.91691 -11.85849 -11.61605 -11.05156 -10.96025 -10.70430 -10.36649 -10.28629 -9.76847 -8.83474 -8.29677 -6.45387 0.33728 0.57326 0.81623 1.00749 1.28925 1.33922 1.36858 1.44913 1.51113 2.01958 2.33481 2.94152 2.99618 3.02526 3.17029 3.44461 3.75755 3.88953 4.02423 4.09447 4.10745 4.14318 4.19688 4.21310 4.37981 4.43642 4.45646 4.49577 4.54636 4.59964 4.63222 4.66170 4.82724 4.93830 4.97545 5.08884 5.19624 5.24749 5.41124 5.58248 5.61132 5.64683 5.67800 5.68384 5.74727 5.87476 5.99571 6.26149 6.29416 6.55977 6.63004 6.92207 7.25659 8.74368 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.003162 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.653689 B = 8853.269872 C =10805.044032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.181 4.181 3 C 0.085 3.915 4 O -0.399 6.399 5 C 0.082 3.918 6 C 0.451 3.549 7 O -0.522 6.522 8 O -0.332 6.332 9 C 0.078 3.922 10 H 0.099 0.901 11 C -0.158 4.158 12 C 0.519 3.481 13 O -0.533 6.533 14 N -0.534 5.534 15 C 0.231 3.769 16 C -0.552 4.552 17 H 0.045 0.955 18 C 0.032 3.968 19 N -0.909 5.909 20 Si 0.949 3.051 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.279 1.279 24 C 0.138 3.862 25 C -0.161 4.161 26 C -0.100 4.100 27 C -0.146 4.146 28 C -0.103 4.103 29 C -0.190 4.190 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.271 0.729 43 H 0.117 0.883 44 H 0.147 0.853 45 H 0.154 0.846 46 H 0.148 0.852 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.943 8.338 -9.633 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.199 4.199 3 C 0.010 3.990 4 O -0.320 6.320 5 C 0.005 3.995 6 C 0.294 3.706 7 O -0.409 6.409 8 O -0.248 6.248 9 C 0.020 3.980 10 H 0.117 0.883 11 C -0.215 4.215 12 C 0.308 3.692 13 O -0.412 6.412 14 N -0.254 5.254 15 C 0.112 3.888 16 C -0.590 4.590 17 H 0.063 0.937 18 C -0.170 4.170 19 N -0.547 5.547 20 Si 0.775 3.225 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.204 1.204 24 C 0.044 3.956 25 C -0.182 4.182 26 C -0.118 4.118 27 C -0.165 4.165 28 C -0.121 4.121 29 C -0.209 4.209 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.135 0.865 44 H 0.165 0.835 45 H 0.172 0.828 46 H 0.165 0.835 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.983 8.192 -9.497 16.030 hybrid contribution 0.395 -1.479 0.076 1.533 sum -9.589 6.712 -9.421 15.025 Atomic orbital electron populations 1.24069 0.94841 1.03651 0.97364 1.22776 0.96429 0.97972 1.02729 1.21869 0.87874 0.96988 0.92285 1.87967 1.45778 1.35883 1.62324 1.21850 0.90671 0.89997 0.96948 1.24323 0.82343 0.80989 0.82928 1.90731 1.71343 1.29308 1.49512 1.86489 1.39921 1.42641 1.55745 1.22389 0.85282 1.01300 0.89038 0.88297 1.22186 1.03157 1.03716 0.92422 1.20314 0.84455 0.84037 0.80368 1.90362 1.85253 1.29250 1.36353 1.45803 1.04849 1.36098 1.38686 1.19663 0.99440 0.83824 0.85914 1.21438 1.49465 0.93913 0.94181 0.93654 1.25502 0.94469 1.01792 0.95212 1.69951 1.48594 1.30897 1.05270 0.85677 0.78904 0.79563 0.78380 1.19228 1.20180 1.20436 1.18325 0.86466 0.95102 0.95716 1.21083 0.92466 1.03014 1.01597 1.21241 0.97316 0.95911 0.97368 1.21447 0.98832 0.99759 0.96448 1.21380 0.91753 0.98977 0.99999 1.22373 1.02334 0.99091 0.97119 0.86798 0.86599 0.87928 0.89915 0.90168 0.84912 0.85931 0.89183 0.90157 0.89596 0.94268 0.92808 0.91954 0.86485 0.83488 0.82811 0.83454 0.82728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 14.31 67.78 0.97 -1.10 16 2 C -0.18 -3.14 9.89 25.65 0.25 -2.89 16 3 C 0.08 1.38 6.35 71.24 0.45 1.83 16 4 O -0.40 -10.16 9.86 -129.90 -1.28 -11.44 16 5 C 0.08 1.77 6.53 71.24 0.47 2.23 16 6 C 0.45 15.11 8.01 71.24 0.57 15.68 16 7 O -0.52 -22.17 15.72 28.41 0.45 -21.72 16 8 O -0.33 -11.80 9.48 -45.23 -0.43 -12.23 16 9 C 0.08 3.13 2.14 29.85 0.06 3.19 16 10 H 0.10 4.62 6.24 -2.39 -0.01 4.60 16 11 C -0.16 -5.36 9.15 71.98 0.66 -4.70 16 12 C 0.52 22.38 6.86 87.66 0.60 22.98 16 13 O -0.53 -23.30 13.13 15.03 0.20 -23.10 16 14 N -0.53 -23.97 2.69 -635.29 -1.71 -25.68 16 15 C 0.23 11.21 4.20 85.63 0.36 11.57 16 16 C -0.55 -29.71 9.05 25.60 0.23 -29.47 16 17 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 18 C 0.03 1.73 5.46 84.65 0.46 2.19 16 19 N -0.91 -50.06 13.29 21.45 0.28 -49.78 16 20 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 24 C 0.14 5.87 6.45 38.15 0.25 6.11 16 25 C -0.16 -6.32 9.27 22.39 0.21 -6.11 16 26 C -0.10 -3.09 10.04 22.25 0.22 -2.86 16 27 C -0.15 -3.98 10.04 22.29 0.22 -3.75 16 28 C -0.10 -3.11 10.04 22.25 0.22 -2.89 16 29 C -0.19 -7.30 8.96 22.39 0.20 -7.10 16 30 H 0.11 1.21 8.06 -2.91 -0.02 1.18 16 31 H 0.12 1.05 7.90 -2.91 -0.02 1.02 16 32 H 0.10 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.08 0.93 7.86 -2.39 -0.02 0.91 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.09 3.04 5.92 -2.39 -0.01 3.03 16 40 H 0.04 1.97 6.23 -2.39 -0.01 1.96 16 41 H 0.05 2.62 4.36 -2.39 -0.01 2.61 16 42 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 43 H 0.12 4.94 6.13 -2.91 -0.02 4.92 16 44 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 45 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 46 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 47 H 0.16 6.36 4.76 -42.23 -0.20 6.16 16 Total: -1.00 -70.93 398.29 6.75 -64.18 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.80 Total: 29.17 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 6.41 Total: 4.92 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -1.42 Total: -75.46 kcal Atomic # 8 Polarization: -67.43 SS G_CDS: -1.07 Total: -68.49 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -70.93 6.75 -64.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729763346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.458 kcal (2) G-P(sol) polarization free energy of solvation -70.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds