Wall clock time and date at job start Wed Apr 1 2020 05:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47575 * 2 1 4 4 C 1.35966 * 116.99870 * 179.97438 * 3 2 1 5 5 C 1.38726 * 119.98076 * 179.97438 * 4 3 2 6 6 C 1.38090 * 120.01552 * 179.97438 * 5 4 3 7 7 C 1.38848 * 119.98124 * 0.02810 * 6 5 4 8 8 N 1.40110 * 120.01105 * 179.97438 * 7 6 5 9 9 C 1.46761 * 124.35200 * 5.67154 * 8 7 6 10 10 C 1.54477 * 105.47510 * 197.03617 * 9 8 7 11 11 H 1.08998 * 110.99993 * 92.72077 * 10 9 8 12 12 C 1.50705 * 110.97045 * 216.46592 * 10 9 8 13 13 O 1.20823 * 119.99840 * 353.83450 * 12 10 9 14 14 O 1.34230 * 119.99744 * 173.83521 * 12 10 9 15 15 C 1.45205 * 116.99877 * 180.02562 * 14 12 10 16 16 H 1.09002 * 109.47019 * 29.99417 * 15 14 12 17 17 C 1.52995 * 109.46719 * 269.99845 * 15 14 12 18 18 C 1.50694 * 109.47182 * 149.99866 * 15 14 12 19 19 H 1.08003 * 120.00256 * 34.99453 * 18 15 14 20 20 C 1.37877 * 119.99867 * 214.99733 * 18 15 14 21 21 N 1.31514 * 119.99936 * 184.94359 * 20 18 15 22 22 Si 1.86796 * 120.00167 * 4.94027 * 20 18 15 23 23 H 1.48499 * 109.47285 * 84.88627 * 22 20 18 24 24 H 1.48496 * 109.47546 * 204.88744 * 22 20 18 25 25 H 1.48508 * 109.47078 * 324.88990 * 22 20 18 26 26 C 1.54629 * 101.76595 * 334.58703 * 10 9 8 27 27 C 1.34420 * 124.34875 * 185.69586 * 8 7 6 28 28 O 1.21295 * 124.93949 * 359.53716 * 27 8 7 29 29 C 1.38845 * 119.97299 * 0.24677 * 7 6 5 30 30 C 1.38091 * 119.98308 * 359.47830 * 29 7 6 31 31 H 1.09002 * 109.47028 * 59.99861 * 1 2 3 32 32 H 1.08993 * 109.47314 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46964 * 300.00249 * 1 2 3 34 34 H 1.09002 * 109.46964 * 239.99751 * 2 1 3 35 35 H 1.09002 * 109.47028 * 120.00139 * 2 1 3 36 36 H 1.07997 * 119.99366 * 0.02674 * 5 4 3 37 37 H 1.07998 * 120.00944 * 180.02562 * 6 5 4 38 38 H 1.09002 * 110.24551 * 78.04110 * 9 8 7 39 39 H 1.09000 * 110.24725 * 316.04086 * 9 8 7 40 40 H 1.09001 * 109.47149 * 175.01923 * 17 15 14 41 41 H 1.09005 * 109.47615 * 55.01944 * 17 15 14 42 42 H 1.08999 * 109.47501 * 295.02256 * 17 15 14 43 43 H 0.97009 * 120.00195 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.48700 * 143.47669 * 26 10 9 45 45 H 1.09002 * 110.48550 * 265.98929 * 26 10 9 46 46 H 1.07995 * 120.00778 * 179.74234 * 29 7 6 47 47 H 1.07998 * 119.99477 * 180.25164 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5252 0.0005 5 6 3.8843 2.8073 0.0000 6 6 5.2532 2.9889 0.0011 7 6 6.0992 1.8879 0.0021 8 7 7.4882 2.0715 0.0027 9 6 8.1512 3.3754 0.1220 10 6 9.6018 3.1456 -0.3569 11 1 9.7009 3.3622 -1.4206 12 6 10.5731 3.9674 0.4508 13 8 10.1625 4.7646 1.2605 14 8 11.8943 3.8137 0.2705 15 6 12.7708 4.6380 1.0834 16 1 12.2876 4.8516 2.0368 17 6 13.0590 5.9507 0.3523 18 6 14.0645 3.9052 1.3289 19 1 14.4776 3.2670 0.5618 20 6 14.7207 4.0494 2.5328 21 7 15.8968 3.4887 2.7120 22 14 13.9395 5.0413 3.9095 23 1 13.0113 4.1745 4.6790 24 1 15.0001 5.5554 4.8128 25 1 13.1859 6.1828 3.3310 26 6 9.7899 1.6360 -0.0798 27 6 8.3849 1.0760 -0.1065 28 8 8.1077 -0.1003 -0.2106 29 6 5.5682 0.6051 -0.0031 30 6 4.1991 0.4249 0.0015 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.2262 3.6635 -0.0004 37 1 5.6657 3.9870 0.0011 38 1 8.1451 3.7081 1.1600 39 1 7.6561 4.1099 -0.5132 40 1 13.6436 6.6056 0.9984 41 1 12.1183 6.4382 0.0963 42 1 13.6204 5.7436 -0.5588 43 1 16.3587 3.5905 3.5590 44 1 10.3982 1.1778 -0.8598 45 1 10.2457 1.4816 0.8982 46 1 6.2257 -0.2517 -0.0066 47 1 3.7858 -0.5729 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:47 Heat of formation + Delta-G solvation = -145.518513 kcal Electronic energy + Delta-G solvation = -29784.326513 eV Core-core repulsion = 25511.043731 eV Total energy + Delta-G solvation = -4273.282782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.49301 -41.30632 -40.72165 -38.53419 -38.06417 -37.22110 -35.18569 -34.20100 -32.69782 -32.36254 -31.96831 -29.50540 -28.93741 -27.44423 -25.93823 -24.72853 -24.06448 -22.98961 -22.16553 -21.21621 -20.88896 -19.50924 -19.30268 -18.73885 -18.52446 -18.06666 -17.31125 -17.04462 -16.79956 -16.63694 -16.19692 -15.87575 -15.64332 -15.19502 -14.94195 -14.81035 -14.74471 -14.57047 -14.46473 -14.33712 -14.20075 -14.15576 -13.66933 -13.51588 -13.27576 -13.11523 -13.02548 -12.88155 -12.74706 -12.59670 -12.56118 -12.52154 -11.97606 -11.93706 -11.82802 -11.52632 -11.37768 -11.16136 -10.87989 -10.86151 -10.72655 -10.08729 -8.64235 -8.45314 -6.54963 0.18593 0.27748 1.19070 1.26622 1.31185 1.37989 1.40003 1.48817 1.91419 2.20548 2.27033 2.73693 2.89057 3.00423 3.16499 3.56967 3.72828 3.82117 3.87084 4.03424 4.05294 4.08984 4.18338 4.26424 4.32982 4.36081 4.37271 4.43723 4.49093 4.61880 4.65717 4.68996 4.71907 4.76515 4.92998 4.94028 4.94543 5.00844 5.13964 5.20779 5.34137 5.35290 5.39768 5.42166 5.65363 5.79050 5.90443 6.15925 6.42580 6.55030 6.81298 6.86719 7.12815 8.69706 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023223 B = 0.002007 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.432900 B =13947.960784 C =14184.891915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.328 6.328 4 C 0.098 3.902 5 C -0.126 4.126 6 C -0.109 4.109 7 C 0.112 3.888 8 N -0.553 5.553 9 C 0.111 3.889 10 C -0.083 4.083 11 H 0.167 0.833 12 C 0.464 3.536 13 O -0.538 6.538 14 O -0.352 6.352 15 C 0.183 3.817 16 H 0.039 0.961 17 C -0.148 4.148 18 C -0.529 4.529 19 H 0.049 0.951 20 C 0.034 3.966 21 N -0.923 5.923 22 Si 0.927 3.073 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.246 1.246 26 C -0.137 4.137 27 C 0.518 3.482 28 O -0.542 6.542 29 C -0.134 4.134 30 C -0.182 4.182 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.091 0.909 39 H 0.130 0.870 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.275 0.725 44 H 0.138 0.862 45 H 0.107 0.893 46 H 0.140 0.860 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.463 -1.902 -7.573 29.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.243 6.243 4 C 0.052 3.948 5 C -0.145 4.145 6 C -0.130 4.130 7 C 0.020 3.980 8 N -0.276 5.276 9 C -0.010 4.010 10 C -0.102 4.102 11 H 0.184 0.816 12 C 0.308 3.692 13 O -0.429 6.429 14 O -0.268 6.268 15 C 0.129 3.871 16 H 0.057 0.943 17 C -0.206 4.206 18 C -0.567 4.567 19 H 0.067 0.933 20 C -0.167 4.167 21 N -0.561 5.561 22 Si 0.750 3.250 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.169 1.169 26 C -0.177 4.177 27 C 0.309 3.691 28 O -0.420 6.420 29 C -0.154 4.154 30 C -0.201 4.201 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.172 0.828 37 H 0.176 0.824 38 H 0.109 0.891 39 H 0.148 0.852 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.156 0.844 45 H 0.125 0.875 46 H 0.157 0.843 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -28.668 -2.158 -7.254 29.650 hybrid contribution 0.559 -0.110 0.987 1.139 sum -28.109 -2.268 -6.268 28.888 Atomic orbital electron populations 1.21795 0.91342 1.04104 1.03295 1.23039 0.96993 0.80992 1.02043 1.86058 1.18440 1.30927 1.88870 1.19141 0.82752 0.94390 0.98527 1.20492 0.94522 0.95469 1.04020 1.20876 0.92008 0.98305 1.01761 1.17885 0.81285 0.94810 1.04053 1.45810 1.03965 1.09354 1.68473 1.22294 0.89753 0.84116 1.04852 1.21919 0.91440 0.93586 1.03298 0.81575 1.23572 0.83648 0.81040 0.80971 1.90608 1.79653 1.37006 1.35667 1.86624 1.16665 1.61903 1.61560 1.20836 0.86815 0.88962 0.90454 0.94274 1.22150 1.00860 0.96212 1.01375 1.20936 1.04138 1.30051 1.01548 0.93260 1.25671 0.95061 0.95974 1.00038 1.69965 1.14872 1.44767 1.26500 0.86048 0.78965 0.80454 0.79572 1.19553 1.19628 1.16928 1.22315 0.94318 0.93704 1.07365 1.21177 0.88485 0.84961 0.74519 1.90605 1.83440 1.17535 1.50388 1.21406 0.95817 0.96916 1.01245 1.21261 0.92896 0.99185 1.06739 0.91655 0.88426 0.91776 0.91365 0.91546 0.82787 0.82354 0.89087 0.85175 0.91939 0.92763 0.91910 0.91572 0.84409 0.87529 0.84255 0.83764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 71.98 0.74 -0.49 16 2 C 0.04 0.54 5.46 71.98 0.39 0.93 16 3 O -0.33 -5.98 10.14 -93.17 -0.94 -6.93 16 4 C 0.10 1.93 6.69 22.50 0.15 2.08 16 5 C -0.13 -2.23 9.98 22.35 0.22 -2.01 16 6 C -0.11 -1.96 9.41 22.38 0.21 -1.75 16 7 C 0.11 2.57 6.60 38.11 0.25 2.83 16 8 N -0.55 -12.59 3.14 -627.56 -1.97 -14.56 16 9 C 0.11 2.11 5.82 86.83 0.51 2.62 16 10 C -0.08 -1.78 3.66 -10.48 -0.04 -1.82 16 11 H 0.17 2.42 8.14 -2.39 -0.02 2.40 16 12 C 0.46 15.04 7.15 71.24 0.51 15.55 16 13 O -0.54 -19.81 14.79 21.97 0.32 -19.48 16 14 O -0.35 -14.11 9.85 -51.41 -0.51 -14.62 16 15 C 0.18 8.41 2.22 29.84 0.07 8.48 16 16 H 0.04 1.87 4.31 -2.39 -0.01 1.86 16 17 C -0.15 -5.88 9.53 71.98 0.69 -5.19 16 18 C -0.53 -29.12 9.25 25.60 0.24 -28.88 16 19 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 20 C 0.03 1.86 5.47 84.65 0.46 2.33 16 21 N -0.92 -54.51 13.96 21.45 0.30 -54.21 16 22 Si 0.93 42.30 26.99 68.60 1.85 44.15 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.25 -10.54 6.82 99.48 0.68 -9.86 16 26 C -0.14 -3.22 6.40 30.59 0.20 -3.02 16 27 C 0.52 13.72 7.92 87.90 0.70 14.42 16 28 O -0.54 -17.53 14.81 -3.07 -0.05 -17.58 16 29 C -0.13 -3.29 9.29 22.38 0.21 -3.09 16 30 C -0.18 -3.73 9.03 22.35 0.20 -3.53 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.73 7.66 -2.39 -0.02 0.72 16 35 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 36 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.16 2.00 6.74 -2.91 -0.02 1.98 16 38 H 0.09 1.99 7.06 -2.39 -0.02 1.98 16 39 H 0.13 1.61 7.24 -2.39 -0.02 1.60 16 40 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 44 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16 45 H 0.11 2.83 7.89 -2.39 -0.02 2.81 16 46 H 0.14 3.97 5.24 -2.91 -0.02 3.96 16 47 H 0.14 2.38 6.29 -2.91 -0.02 2.36 16 Total: -1.00 -71.36 388.51 5.67 -65.69 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.97 Total: 18.10 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.70 Total: -0.56 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -1.67 Total: -68.77 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -1.17 Total: -58.61 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.85 Total: 44.15 kcal Total: -71.36 5.67 -65.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.833 kcal (2) G-P(sol) polarization free energy of solvation -71.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds