Wall clock time and date at job start Wed Apr 1 2020 05:23:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 O 1.42908 * 109.47229 * 2 1
4 4 C 1.35965 * 117.00130 * 180.02562 * 3 2 1
5 5 C 1.38725 * 119.98575 * 180.02562 * 4 3 2
6 6 C 1.38088 * 120.01632 * 180.02562 * 5 4 3
7 7 C 1.38851 * 119.98270 * 359.97438 * 6 5 4
8 8 N 1.40109 * 120.01229 * 179.97438 * 7 6 5
9 9 C 1.46770 * 124.35184 * 354.27761 * 8 7 6
10 10 C 1.54476 * 105.47454 * 163.00249 * 9 8 7
11 11 H 1.09003 * 110.96949 * 267.25928 * 10 9 8
12 12 C 1.50701 * 110.96637 * 143.53315 * 10 9 8
13 13 O 1.20824 * 120.00176 * 0.02562 * 12 10 9
14 14 O 1.34234 * 119.99786 * 179.97438 * 12 10 9
15 15 C 1.45194 * 116.99856 * 179.97438 * 14 12 10
16 16 H 1.09001 * 109.47450 * 330.00453 * 15 14 12
17 17 C 1.53002 * 109.46959 * 90.00297 * 15 14 12
18 18 C 1.50705 * 109.47040 * 210.00126 * 15 14 12
19 19 H 1.07990 * 120.00051 * 359.97438 * 18 15 14
20 20 C 1.37883 * 119.99588 * 180.02562 * 18 15 14
21 21 N 1.31514 * 119.99241 * 179.72686 * 20 18 15
22 22 Si 1.86799 * 120.00310 * 359.97438 * 20 18 15
23 23 H 1.48507 * 109.46922 * 90.00400 * 22 20 18
24 24 H 1.48492 * 109.47139 * 210.00035 * 22 20 18
25 25 H 1.48491 * 109.47165 * 330.00494 * 22 20 18
26 26 C 1.54628 * 101.76568 * 25.41714 * 10 9 8
27 27 C 1.34418 * 124.35218 * 174.29948 * 8 7 6
28 28 O 1.21302 * 124.93745 * 0.42298 * 27 8 7
29 29 C 1.38844 * 119.96967 * 0.25830 * 7 6 5
30 30 C 1.38089 * 119.98689 * 359.46948 * 29 7 6
31 31 H 1.09009 * 109.47007 * 299.99707 * 1 2 3
32 32 H 1.08997 * 109.47505 * 59.99591 * 1 2 3
33 33 H 1.09002 * 109.47353 * 180.02562 * 1 2 3
34 34 H 1.09001 * 109.47325 * 240.00294 * 2 1 3
35 35 H 1.09002 * 109.47573 * 119.99948 * 2 1 3
36 36 H 1.07996 * 119.98968 * 359.97438 * 5 4 3
37 37 H 1.07996 * 120.00914 * 179.97438 * 6 5 4
38 38 H 1.08999 * 110.24495 * 44.00097 * 9 8 7
39 39 H 1.09001 * 110.24285 * 282.00467 * 9 8 7
40 40 H 1.08993 * 109.47179 * 299.99930 * 17 15 14
41 41 H 1.09001 * 109.46913 * 59.99827 * 17 15 14
42 42 H 1.09006 * 109.47258 * 179.97438 * 17 15 14
43 43 H 0.97003 * 119.99485 * 179.97438 * 21 20 18
44 44 H 1.08996 * 110.48635 * 93.87852 * 26 10 9
45 45 H 1.08998 * 110.48851 * 216.52117 * 26 10 9
46 46 H 1.08002 * 120.00302 * 179.72120 * 29 7 6
47 47 H 1.08001 * 119.99150 * 180.25649 * 30 29 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3542 1.5255 -0.0005
5 6 3.8841 2.8075 0.0000
6 6 5.2530 2.9892 -0.0011
7 6 6.0991 1.8882 -0.0022
8 7 7.4881 2.0719 -0.0038
9 6 8.1510 3.3757 -0.1254
10 6 9.6021 3.1464 0.3521
11 1 9.7020 3.3646 1.4154
12 6 10.5723 3.9673 -0.4577
13 8 10.1668 4.6815 -1.3439
14 8 11.8870 3.9058 -0.1938
15 6 12.7629 4.7231 -1.0142
16 1 12.3263 4.8413 -2.0059
17 6 12.9334 6.0980 -0.3649
18 6 14.1079 4.0539 -1.1339
19 1 14.2867 3.1092 -0.6423
20 6 15.1106 4.6486 -1.8703
21 7 16.2860 4.0672 -1.9703
22 14 14.8016 6.2831 -2.7201
23 1 15.1583 7.3939 -1.8012
24 1 15.6344 6.3686 -3.9465
25 1 13.3667 6.3864 -3.0879
26 6 9.7899 1.6365 0.0763
27 6 8.3849 1.0765 0.1053
28 8 8.1078 -0.0997 0.2110
29 6 5.5680 0.6054 -0.0076
30 6 4.1990 0.4251 -0.0008
31 1 -0.3633 0.5138 0.8901
32 1 -0.3634 0.5139 -0.8899
33 1 -0.3634 -1.0277 0.0005
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5138 0.8900
36 1 3.2259 3.6637 0.0004
37 1 5.6654 3.9873 -0.0011
38 1 7.6566 4.1108 0.5097
39 1 8.1435 3.7072 -1.1637
40 1 11.9606 6.5820 -0.2783
41 1 13.3700 5.9799 0.6268
42 1 13.5913 6.7116 -0.9805
43 1 16.9913 4.4853 -2.4887
44 1 10.2424 1.4810 -0.9031
45 1 10.3991 1.1791 0.8559
46 1 6.2256 -0.2513 -0.0129
47 1 3.7858 -0.5727 -0.0008
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000733710115.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:23:52
Heat of formation + Delta-G solvation = -137.729658 kcal
Electronic energy + Delta-G solvation = -29702.619356 eV
Core-core repulsion = 25429.674325 eV
Total energy + Delta-G solvation = -4272.945032 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-42.50661 -41.34580 -40.73057 -38.53152 -38.13098 -37.24362 -35.29552 -34.19981
-32.72703 -32.42121 -31.96566 -29.51750 -28.94870 -27.33166 -25.99256 -24.76437
-24.06484 -23.16886 -22.21200 -21.23778 -20.88755 -19.37114 -19.26795 -18.70513
-18.54751 -18.07635 -17.34558 -17.05126 -16.90507 -16.75744 -16.22207 -15.93709
-15.66486 -15.18240 -15.05107 -14.85586 -14.74336 -14.64710 -14.39423 -14.32798
-14.25605 -14.17792 -13.72529 -13.63454 -13.37249 -13.25796 -13.10863 -12.84001
-12.73963 -12.59818 -12.53799 -12.20443 -11.95276 -11.82406 -11.75300 -11.65398
-11.40741 -11.20223 -10.88919 -10.81897 -10.72073 -10.08268 -8.63879 -8.42212
-6.51101 0.18899 0.28202 1.14505 1.26253 1.33767 1.38138 1.42504
1.47082 1.88215 2.21519 2.27358 2.74085 2.90979 2.97273 3.15058
3.55518 3.67011 3.82372 3.87324 4.00292 4.05568 4.08555 4.18639
4.28395 4.32983 4.35918 4.37559 4.43489 4.44858 4.49264 4.56722
4.68210 4.70421 4.76116 4.79585 4.94196 4.94800 5.01126 5.14221
5.21059 5.24573 5.34508 5.36395 5.40062 5.63908 5.79319 5.90549
6.14233 6.42920 6.54073 6.80095 6.83929 7.13582 8.73471
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.028557 B = 0.001910 C = 0.001839
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 980.250362 B =14658.634484 C =15223.669233
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.044 3.956
3 O -0.329 6.329
4 C 0.098 3.902
5 C -0.126 4.126
6 C -0.109 4.109
7 C 0.112 3.888
8 N -0.552 5.552
9 C 0.110 3.890
10 C -0.082 4.082
11 H 0.166 0.834
12 C 0.466 3.534
13 O -0.534 6.534
14 O -0.345 6.345
15 C 0.193 3.807
16 H 0.035 0.965
17 C -0.165 4.165
18 C -0.539 4.539
19 H 0.048 0.952
20 C 0.029 3.971
21 N -0.931 5.931
22 Si 0.940 3.060
23 H -0.252 1.252
24 H -0.288 1.288
25 H -0.254 1.254
26 C -0.136 4.136
27 C 0.519 3.481
28 O -0.541 6.541
29 C -0.133 4.133
30 C -0.182 4.182
31 H 0.064 0.936
32 H 0.063 0.937
33 H 0.097 0.903
34 H 0.066 0.934
35 H 0.068 0.932
36 H 0.154 0.846
37 H 0.159 0.841
38 H 0.130 0.870
39 H 0.093 0.907
40 H 0.063 0.937
41 H 0.070 0.930
42 H 0.053 0.947
43 H 0.274 0.726
44 H 0.108 0.892
45 H 0.138 0.862
46 H 0.140 0.860
47 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.388 -2.503 6.654 30.236
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.031 4.031
3 O -0.243 6.243
4 C 0.052 3.948
5 C -0.145 4.145
6 C -0.129 4.129
7 C 0.020 3.980
8 N -0.275 5.275
9 C -0.011 4.011
10 C -0.102 4.102
11 H 0.183 0.817
12 C 0.310 3.690
13 O -0.425 6.425
14 O -0.260 6.260
15 C 0.139 3.861
16 H 0.052 0.948
17 C -0.222 4.222
18 C -0.577 4.577
19 H 0.067 0.933
20 C -0.171 4.171
21 N -0.569 5.569
22 Si 0.765 3.235
23 H -0.177 1.177
24 H -0.215 1.215
25 H -0.178 1.178
26 C -0.176 4.176
27 C 0.309 3.691
28 O -0.420 6.420
29 C -0.153 4.153
30 C -0.201 4.201
31 H 0.083 0.917
32 H 0.082 0.918
33 H 0.116 0.884
34 H 0.085 0.915
35 H 0.086 0.914
36 H 0.172 0.828
37 H 0.177 0.823
38 H 0.148 0.852
39 H 0.111 0.889
40 H 0.082 0.918
41 H 0.089 0.911
42 H 0.071 0.929
43 H 0.083 0.917
44 H 0.126 0.874
45 H 0.156 0.844
46 H 0.157 0.843
47 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -29.574 -2.753 6.373 30.378
hybrid contribution 0.803 0.157 -0.732 1.098
sum -28.771 -2.595 5.641 29.434
Atomic orbital electron populations
1.21796 0.91360 1.04101 1.03290 1.23038 0.96982 0.80989 1.02047
1.86060 1.18460 1.30928 1.88867 1.19144 0.82747 0.94399 0.98510
1.20491 0.94541 0.95460 1.04035 1.20876 0.91993 0.98318 1.01726
1.17879 0.81283 0.94803 1.04079 1.45798 1.03952 1.09345 1.68450
1.22314 0.89608 0.84176 1.05005 1.21895 0.91402 0.93563 1.03298
0.81664 1.23559 0.83268 0.80170 0.82009 1.90619 1.79340 1.40328
1.32170 1.86501 1.17473 1.63613 1.58454 1.20661 0.87220 0.88192
0.90047 0.94775 1.22423 1.01271 0.96360 1.02188 1.20973 0.95330
1.08162 1.33192 0.93329 1.25570 0.94163 1.01298 0.96035 1.69967
1.04225 1.41228 1.41452 0.85991 0.79247 0.80011 0.78247 1.17722
1.21491 1.17781 1.22315 0.94450 0.93509 1.07366 1.21157 0.88444
0.84964 0.74545 1.90612 1.83430 1.17536 1.50379 1.21397 0.95793
0.96911 1.01211 1.21263 0.92911 0.99178 1.06759 0.91670 0.91772
0.88430 0.91527 0.91371 0.82808 0.82329 0.85168 0.88855 0.91770
0.91051 0.92877 0.91668 0.87409 0.84398 0.84268 0.83776
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.20 10.28 71.98 0.74 -0.46 16
2 C 0.04 0.53 5.46 71.98 0.39 0.92 16
3 O -0.33 -5.90 10.14 -93.16 -0.94 -6.84 16
4 C 0.10 1.90 6.69 22.50 0.15 2.05 16
5 C -0.13 -2.19 9.98 22.35 0.22 -1.97 16
6 C -0.11 -1.90 9.41 22.38 0.21 -1.69 16
7 C 0.11 2.51 6.60 38.11 0.25 2.76 16
8 N -0.55 -12.21 3.14 -627.54 -1.97 -14.18 16
9 C 0.11 2.02 5.87 86.83 0.51 2.52 16
10 C -0.08 -1.71 3.66 -10.48 -0.04 -1.74 16
11 H 0.17 2.33 8.14 -2.39 -0.02 2.31 16
12 C 0.47 14.81 7.16 71.24 0.51 15.32 16
13 O -0.53 -19.36 14.73 21.97 0.32 -19.04 16
14 O -0.34 -13.70 9.86 -51.46 -0.51 -14.21 16
15 C 0.19 8.94 2.15 29.85 0.06 9.00 16
16 H 0.03 1.67 6.22 -2.39 -0.01 1.66 16
17 C -0.17 -6.63 9.03 71.98 0.65 -5.98 16
18 C -0.54 -30.01 9.48 25.60 0.24 -29.77 16
19 H 0.05 3.00 8.06 -2.92 -0.02 2.98 16
20 C 0.03 1.63 5.45 84.66 0.46 2.09 16
21 N -0.93 -55.53 13.96 21.45 0.30 -55.23 16
22 Si 0.94 42.36 24.37 68.60 1.67 44.03 16
23 H -0.25 -10.47 6.87 99.48 0.68 -9.79 16
24 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16
25 H -0.25 -10.98 6.53 99.48 0.65 -10.33 16
26 C -0.14 -3.09 6.41 30.59 0.20 -2.89 16
27 C 0.52 13.35 7.92 87.90 0.70 14.05 16
28 O -0.54 -17.17 14.82 -3.10 -0.05 -17.22 16
29 C -0.13 -3.21 9.28 22.38 0.21 -3.00 16
30 C -0.18 -3.67 9.03 22.35 0.20 -3.47 16
31 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16
32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16
33 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16
34 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16
35 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16
36 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16
37 H 0.16 1.92 6.74 -2.91 -0.02 1.90 16
38 H 0.13 1.52 7.24 -2.39 -0.02 1.50 16
39 H 0.09 1.97 6.96 -2.39 -0.02 1.95 16
40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
41 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16
42 H 0.05 2.17 3.27 -2.38 -0.01 2.16 16
43 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16
44 H 0.11 2.71 7.89 -2.39 -0.02 2.69 16
45 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16
46 H 0.14 3.90 5.25 -2.91 -0.02 3.88 16
47 H 0.14 2.32 6.29 -2.91 -0.02 2.31 16
Total: -1.00 -72.39 381.97 5.42 -66.97
By element:
Atomic # 1 Polarization: 17.05 SS G_CDS: 0.92 Total: 17.97 kcal
Atomic # 6 Polarization: -7.93 SS G_CDS: 5.67 Total: -2.26 kcal
Atomic # 7 Polarization: -67.74 SS G_CDS: -1.67 Total: -69.41 kcal
Atomic # 8 Polarization: -56.13 SS G_CDS: -1.17 Total: -57.30 kcal
Atomic # 14 Polarization: 42.36 SS G_CDS: 1.67 Total: 44.03 kcal
Total: -72.39 5.42 -66.97 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000733710115.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.760 kcal
(2) G-P(sol) polarization free energy of solvation -72.385 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.145 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.970 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.730 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds