Wall clock time and date at job start Wed Apr 1 2020 04:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47335 * 2 1 4 4 O 1.45200 * 109.47210 * 240.00136 * 2 1 3 5 5 C 1.34771 * 117.00188 * 89.99944 * 4 2 1 6 6 O 1.21511 * 119.99918 * 0.02562 * 5 4 2 7 7 C 1.47511 * 120.00283 * 180.02562 * 5 4 2 8 8 C 1.40070 * 119.89648 * 359.72720 * 7 5 4 9 9 C 1.36299 * 120.09886 * 179.71873 * 8 7 5 10 10 C 1.40899 * 119.89518 * 0.53340 * 9 8 7 11 11 C 1.41098 * 120.09937 * 179.76418 * 10 9 8 12 12 H 1.08002 * 120.00146 * 204.63055 * 11 10 9 13 13 C 1.40251 * 119.99680 * 24.62801 * 11 10 9 14 14 N 1.30629 * 119.99877 * 17.89869 * 13 11 10 15 15 Si 1.86796 * 119.99682 * 197.90014 * 13 11 10 16 16 H 1.48502 * 109.47395 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47023 * 120.00274 * 15 13 11 18 18 H 1.48504 * 109.46990 * 239.99826 * 15 13 11 19 19 C 1.40894 * 119.80782 * 359.74081 * 10 9 8 20 20 C 1.36302 * 119.89711 * 0.02562 * 19 10 9 21 21 C 1.50703 * 109.47187 * 119.99892 * 2 1 3 22 22 O 1.21281 * 119.99845 * 114.99846 * 21 2 1 23 23 N 1.34773 * 120.00001 * 294.99899 * 21 2 1 24 24 C 1.46501 * 119.99745 * 179.97438 * 23 21 2 25 25 C 1.53006 * 109.47082 * 180.02562 * 24 23 21 26 26 H 1.09005 * 110.32836 * 57.74560 * 25 24 23 27 27 C 1.54477 * 110.37394 * 179.97438 * 25 24 23 28 28 C 1.54507 * 104.06117 * 142.92010 * 27 25 24 29 29 C 1.54480 * 104.06480 * 0.02562 * 28 27 25 30 30 O 1.44428 * 104.89951 * 335.96175 * 29 28 27 31 31 H 1.09000 * 109.47335 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47078 * 300.00082 * 1 2 3 33 33 H 1.08999 * 109.46900 * 59.99524 * 1 2 3 34 34 H 1.07996 * 119.95311 * 359.97438 * 8 7 5 35 35 H 1.08000 * 120.05529 * 180.29425 * 9 8 7 36 36 H 0.96999 * 119.99917 * 179.97438 * 14 13 11 37 37 H 1.08003 * 120.05658 * 180.02562 * 19 10 9 38 38 H 1.07998 * 119.95528 * 180.02562 * 20 19 10 39 39 H 0.96996 * 120.00305 * 0.02562 * 23 21 2 40 40 H 1.08993 * 109.47445 * 60.00366 * 24 23 21 41 41 H 1.08996 * 109.47533 * 300.00061 * 24 23 21 42 42 H 1.09001 * 110.51015 * 24.27517 * 27 25 24 43 43 H 1.09004 * 110.51129 * 261.56670 * 27 25 24 44 44 H 1.09006 * 110.51067 * 241.35459 * 28 27 25 45 45 H 1.09001 * 110.51013 * 118.64886 * 28 27 25 46 46 H 1.08998 * 110.37173 * 94.85265 * 29 28 27 47 47 H 1.09001 * 110.37029 * 217.07876 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2179 0.0671 -2.2855 6 8 1.9978 1.2616 -2.2546 7 6 2.7084 -0.5605 -3.5271 8 6 2.9670 -1.9368 -3.5587 9 6 3.4149 -2.5220 -4.7054 10 6 3.6284 -1.7383 -5.8567 11 6 4.0967 -2.3388 -7.0445 12 1 4.6290 -1.7476 -7.7750 13 6 3.8710 -3.7034 -7.2766 14 7 2.9528 -4.3382 -6.5981 15 14 4.8836 -4.6132 -8.5557 16 1 5.8498 -3.6748 -9.1813 17 1 5.6228 -5.7238 -7.9036 18 1 3.9827 -5.1641 -9.5998 19 6 3.3725 -0.3533 -5.8186 20 6 2.9202 0.2226 -4.6689 21 6 2.0323 -0.7104 1.2305 22 8 2.6529 -1.7467 1.1215 23 7 1.7919 -0.1941 2.4520 24 6 2.2798 -0.8851 3.6482 25 6 1.8746 -0.0951 4.8943 26 1 0.7919 0.0259 4.9305 27 6 2.3788 -0.8065 6.1695 28 6 2.7910 0.3505 7.1068 29 6 2.4865 1.6242 6.2873 30 8 2.5258 1.1967 4.9083 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.8073 -2.5359 -2.6745 35 1 3.6095 -3.5840 -4.7303 36 1 2.7965 -5.2819 -6.7588 37 1 3.5344 0.2511 -6.6988 38 1 2.7233 1.2840 -4.6388 39 1 1.2952 0.6344 2.5392 40 1 3.3660 -0.9637 3.6047 41 1 1.8448 -1.8834 3.6940 42 1 3.2378 -1.4372 5.9407 43 1 1.5798 -1.3962 6.6191 44 1 3.8539 0.2919 7.3414 45 1 2.1958 0.3329 8.0198 46 1 1.4978 2.0089 6.5373 47 1 3.2461 2.3840 6.4708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758688349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:14 Heat of formation + Delta-G solvation = -160.718721 kcal Electronic energy + Delta-G solvation = -29260.375214 eV Core-core repulsion = 24986.433302 eV Total energy + Delta-G solvation = -4273.941912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.38709 -39.82260 -38.95286 -37.40383 -35.67476 -34.92650 -33.92706 -32.65402 -32.11580 -30.40728 -29.97661 -29.46999 -26.25013 -26.11411 -24.30518 -22.61795 -22.07151 -21.63913 -20.93501 -20.33701 -19.79459 -17.70661 -17.53226 -17.28493 -16.90651 -16.18721 -16.08245 -15.96438 -15.51500 -15.42863 -15.09851 -14.72333 -14.19866 -14.05491 -13.86397 -13.52518 -13.18239 -13.03782 -12.84970 -12.68088 -12.44815 -12.33337 -12.25403 -12.07761 -11.99187 -11.84573 -11.71387 -11.41510 -11.36761 -11.27813 -11.13947 -10.96647 -10.69311 -10.37730 -10.26615 -10.11049 -9.68317 -9.59059 -9.41567 -9.34360 -9.25627 -7.71691 -7.61160 -7.07131 -4.64996 2.06421 2.57342 2.62111 2.87333 2.94890 3.00441 3.07284 3.34055 3.61677 3.67061 3.73207 4.04848 4.23313 4.40070 4.48773 4.58304 4.59699 4.68937 4.90430 4.94991 5.02612 5.10248 5.19048 5.32504 5.33443 5.36741 5.43493 5.52410 5.55184 5.60095 5.70779 5.95980 6.09381 6.18965 6.25539 6.30758 6.34549 6.76887 6.84555 6.99969 7.02443 7.12578 7.31848 7.45423 7.69720 7.81381 7.87872 8.03442 8.13882 8.38966 8.59314 8.72125 8.73410 9.84071 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.001798 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.585674 B =15568.599638 C =16258.924766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.070 3.930 3 H 0.106 0.894 4 O -0.330 6.330 5 C 0.515 3.485 6 O -0.553 6.553 7 C -0.274 4.274 8 C -0.040 4.040 9 C -0.185 4.185 10 C 0.131 3.869 11 C -0.434 4.434 12 H 0.088 0.912 13 C 0.072 3.928 14 N -0.762 5.762 15 Si 0.915 3.085 16 H -0.256 1.256 17 H -0.268 1.268 18 H -0.271 1.271 19 C -0.239 4.239 20 C -0.017 4.017 21 C 0.519 3.481 22 O -0.513 6.513 23 N -0.727 5.727 24 C 0.129 3.871 25 C 0.061 3.939 26 H 0.078 0.922 27 C -0.148 4.148 28 C -0.155 4.155 29 C 0.043 3.957 30 O -0.367 6.367 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.288 0.712 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.404 0.596 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.258 5.052 22.671 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 H 0.124 0.876 4 O -0.247 6.247 5 C 0.368 3.632 6 O -0.447 6.447 7 C -0.276 4.276 8 C -0.059 4.059 9 C -0.204 4.204 10 C 0.128 3.872 11 C -0.461 4.461 12 H 0.106 0.894 13 C -0.150 4.150 14 N -0.385 5.385 15 Si 0.738 3.262 16 H -0.180 1.180 17 H -0.193 1.193 18 H -0.196 1.196 19 C -0.259 4.259 20 C -0.036 4.036 21 C 0.304 3.696 22 O -0.387 6.387 23 N -0.382 5.382 24 C 0.005 3.995 25 C 0.003 3.997 26 H 0.096 0.904 27 C -0.186 4.186 28 C -0.193 4.193 29 C -0.033 4.033 30 O -0.286 6.286 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.238 0.762 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.895 4.479 22.446 23.218 hybrid contribution -0.079 -0.027 -0.118 0.144 sum -3.974 4.452 22.329 23.113 Atomic orbital electron populations 1.22120 0.92433 1.03738 1.03618 1.22176 0.95586 0.97637 0.83527 0.87601 1.86767 1.77915 1.41021 1.18989 1.21702 0.73590 0.84748 0.83166 1.90678 1.52973 1.16537 1.84524 1.18173 1.23692 0.94644 0.91126 1.20705 0.95008 0.92757 0.97426 1.21015 1.07238 1.00375 0.91790 1.17868 0.85601 0.91191 0.92566 1.19960 1.29199 0.93661 1.03239 0.89426 1.26167 0.93829 0.97966 0.97055 1.69748 1.22814 1.11594 1.34325 0.86135 0.80383 0.79655 0.79998 1.17966 1.19258 1.19587 1.20673 1.12203 0.95746 0.97254 1.20339 0.94248 0.97526 0.91468 1.20339 0.79716 0.85470 0.84097 1.90749 1.38710 1.22903 1.86321 1.45745 1.59071 1.28270 1.05087 1.21428 1.00847 0.95294 0.81922 1.23330 0.97285 0.84240 0.94824 0.90439 1.22911 1.02451 0.98533 0.94711 1.22942 1.02790 0.94561 0.98998 1.23417 1.01586 0.96902 0.81440 1.89262 1.79438 1.33825 1.26097 0.91021 0.90883 0.90424 0.87770 0.86020 0.90025 0.88050 0.87930 0.76156 0.90460 0.89846 0.89946 0.89983 0.90427 0.90383 0.92155 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.50 37.16 0.35 -1.69 16 2 C 0.07 1.12 2.98 -27.88 -0.08 1.04 16 3 H 0.11 1.65 7.16 -51.93 -0.37 1.28 16 4 O -0.33 -6.90 8.65 -47.35 -0.41 -7.31 16 5 C 0.52 11.75 7.86 34.51 0.27 12.02 16 6 O -0.55 -12.81 15.58 -19.27 -0.30 -13.11 16 7 C -0.27 -6.67 5.89 -104.74 -0.62 -7.29 16 8 C -0.04 -0.99 9.55 -39.59 -0.38 -1.37 16 9 C -0.19 -4.77 8.63 -39.27 -0.34 -5.10 16 10 C 0.13 3.39 5.58 -106.80 -0.60 2.80 16 11 C -0.43 -10.80 9.04 -37.74 -0.34 -11.14 16 12 H 0.09 2.06 7.91 -52.49 -0.42 1.65 16 13 C 0.07 1.69 5.13 -17.31 -0.09 1.60 16 14 N -0.76 -18.49 10.95 55.56 0.61 -17.88 16 15 Si 0.92 17.29 29.60 -169.99 -5.03 12.26 16 16 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 17 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 18 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 19 C -0.24 -5.82 9.73 -39.27 -0.38 -6.20 16 20 C -0.02 -0.41 9.52 -39.59 -0.38 -0.79 16 21 C 0.52 7.98 7.18 -10.99 -0.08 7.90 16 22 O -0.51 -10.07 16.51 -14.05 -0.23 -10.30 16 23 N -0.73 -7.93 5.48 -60.29 -0.33 -8.26 16 24 C 0.13 1.21 5.29 -4.04 -0.02 1.19 16 25 C 0.06 0.43 3.33 -25.95 -0.09 0.34 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 C -0.15 -0.79 6.63 -25.17 -0.17 -0.95 16 28 C -0.16 -0.73 7.09 -25.16 -0.18 -0.91 16 29 C 0.04 0.25 7.62 37.93 0.29 0.54 16 30 O -0.37 -3.25 11.33 -35.23 -0.40 -3.64 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.64 7.92 -51.93 -0.41 0.23 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.10 2.46 7.59 -52.49 -0.40 2.06 16 35 H 0.12 3.17 6.15 -52.49 -0.32 2.85 16 36 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 37 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 38 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 39 H 0.40 3.45 8.25 -40.82 -0.34 3.11 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 398.26 15.07 6.00 6.00 Total: -1.00 -31.74 398.26 -9.76 -41.50 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.85 Total: 8.75 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.82 Total: -8.00 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.28 Total: -26.14 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.34 Total: -34.37 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.74 -9.76 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758688349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.217 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds