Wall clock time and date at job start Wed Apr 1 2020 04:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47335 * 2 1 4 4 O 1.45200 * 109.47210 * 240.00136 * 2 1 3 5 5 C 1.34771 * 117.00188 * 89.99944 * 4 2 1 6 6 O 1.21511 * 119.99918 * 0.02562 * 5 4 2 7 7 C 1.47511 * 120.00283 * 180.02562 * 5 4 2 8 8 C 1.40070 * 119.89648 * 359.72720 * 7 5 4 9 9 C 1.36299 * 120.09886 * 179.71873 * 8 7 5 10 10 C 1.40899 * 119.89518 * 0.53340 * 9 8 7 11 11 C 1.41098 * 120.09937 * 179.76418 * 10 9 8 12 12 H 1.08002 * 120.00146 * 204.63055 * 11 10 9 13 13 C 1.40251 * 119.99680 * 24.62801 * 11 10 9 14 14 N 1.30629 * 119.99877 * 17.89869 * 13 11 10 15 15 Si 1.86796 * 119.99682 * 197.90014 * 13 11 10 16 16 H 1.48502 * 109.47395 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47023 * 120.00274 * 15 13 11 18 18 H 1.48504 * 109.46990 * 239.99826 * 15 13 11 19 19 C 1.40894 * 119.80782 * 359.74081 * 10 9 8 20 20 C 1.36302 * 119.89711 * 0.02562 * 19 10 9 21 21 C 1.50703 * 109.47187 * 119.99892 * 2 1 3 22 22 O 1.21281 * 119.99845 * 114.99846 * 21 2 1 23 23 N 1.34773 * 120.00001 * 294.99899 * 21 2 1 24 24 C 1.46501 * 119.99745 * 179.97438 * 23 21 2 25 25 C 1.53006 * 109.47082 * 180.02562 * 24 23 21 26 26 H 1.09005 * 110.32836 * 57.74560 * 25 24 23 27 27 C 1.54477 * 110.37394 * 179.97438 * 25 24 23 28 28 C 1.54507 * 104.06117 * 142.92010 * 27 25 24 29 29 C 1.54480 * 104.06480 * 0.02562 * 28 27 25 30 30 O 1.44428 * 104.89951 * 335.96175 * 29 28 27 31 31 H 1.09000 * 109.47335 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47078 * 300.00082 * 1 2 3 33 33 H 1.08999 * 109.46900 * 59.99524 * 1 2 3 34 34 H 1.07996 * 119.95311 * 359.97438 * 8 7 5 35 35 H 1.08000 * 120.05529 * 180.29425 * 9 8 7 36 36 H 0.96999 * 119.99917 * 179.97438 * 14 13 11 37 37 H 1.08003 * 120.05658 * 180.02562 * 19 10 9 38 38 H 1.07998 * 119.95528 * 180.02562 * 20 19 10 39 39 H 0.96996 * 120.00305 * 0.02562 * 23 21 2 40 40 H 1.08993 * 109.47445 * 60.00366 * 24 23 21 41 41 H 1.08996 * 109.47533 * 300.00061 * 24 23 21 42 42 H 1.09001 * 110.51015 * 24.27517 * 27 25 24 43 43 H 1.09004 * 110.51129 * 261.56670 * 27 25 24 44 44 H 1.09006 * 110.51067 * 241.35459 * 28 27 25 45 45 H 1.09001 * 110.51013 * 118.64886 * 28 27 25 46 46 H 1.08998 * 110.37173 * 94.85265 * 29 28 27 47 47 H 1.09001 * 110.37029 * 217.07876 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2179 0.0671 -2.2855 6 8 1.9978 1.2616 -2.2546 7 6 2.7084 -0.5605 -3.5271 8 6 2.9670 -1.9368 -3.5587 9 6 3.4149 -2.5220 -4.7054 10 6 3.6284 -1.7383 -5.8567 11 6 4.0967 -2.3388 -7.0445 12 1 4.6290 -1.7476 -7.7750 13 6 3.8710 -3.7034 -7.2766 14 7 2.9528 -4.3382 -6.5981 15 14 4.8836 -4.6132 -8.5557 16 1 5.8498 -3.6748 -9.1813 17 1 5.6228 -5.7238 -7.9036 18 1 3.9827 -5.1641 -9.5998 19 6 3.3725 -0.3533 -5.8186 20 6 2.9202 0.2226 -4.6689 21 6 2.0323 -0.7104 1.2305 22 8 2.6529 -1.7467 1.1215 23 7 1.7919 -0.1941 2.4520 24 6 2.2798 -0.8851 3.6482 25 6 1.8746 -0.0951 4.8943 26 1 0.7919 0.0259 4.9305 27 6 2.3788 -0.8065 6.1695 28 6 2.7910 0.3505 7.1068 29 6 2.4865 1.6242 6.2873 30 8 2.5258 1.1967 4.9083 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.8073 -2.5359 -2.6745 35 1 3.6095 -3.5840 -4.7303 36 1 2.7965 -5.2819 -6.7588 37 1 3.5344 0.2511 -6.6988 38 1 2.7233 1.2840 -4.6388 39 1 1.2952 0.6344 2.5392 40 1 3.3660 -0.9637 3.6047 41 1 1.8448 -1.8834 3.6940 42 1 3.2378 -1.4372 5.9407 43 1 1.5798 -1.3962 6.6191 44 1 3.8539 0.2919 7.3414 45 1 2.1958 0.3329 8.0198 46 1 1.4978 2.0089 6.5373 47 1 3.2461 2.3840 6.4708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758688349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:13 Heat of formation + Delta-G solvation = -178.987079 kcal Electronic energy + Delta-G solvation = -29261.167390 eV Core-core repulsion = 24986.433302 eV Total energy + Delta-G solvation = -4274.734088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.73744 -40.82045 -40.10549 -39.23460 -37.32456 -35.99844 -35.76527 -33.46654 -33.01369 -32.06343 -31.39269 -30.88601 -28.05074 -26.91133 -25.49687 -24.01555 -22.93143 -22.81482 -22.25768 -21.75761 -21.20925 -19.41803 -19.01767 -18.70000 -17.66380 -17.53633 -17.22615 -17.05194 -16.77272 -16.63657 -16.20450 -15.89932 -15.77748 -15.27661 -15.10509 -14.70110 -14.60813 -14.42160 -14.23598 -13.98950 -13.75509 -13.64448 -13.44749 -13.24674 -13.19910 -12.88158 -12.78322 -12.67425 -12.63843 -12.41071 -12.37546 -12.15933 -11.88910 -11.82176 -11.51744 -11.44365 -11.32098 -11.15237 -10.91159 -10.77843 -10.28885 -9.65110 -9.55041 -8.86081 -6.56390 0.20830 1.12449 1.31037 1.36107 1.39167 1.40764 1.56461 1.85592 2.14481 2.29704 2.66510 2.85248 3.48499 3.55536 3.60838 3.74849 3.78057 3.87520 3.98513 4.09330 4.14770 4.16298 4.34596 4.40706 4.43330 4.52623 4.59221 4.61107 4.64069 4.82942 4.89716 4.91511 4.97262 4.98559 5.02462 5.08126 5.10405 5.15984 5.20224 5.24338 5.35045 5.54678 5.79148 5.85050 5.89074 5.95397 6.12932 6.30905 6.47980 6.68598 6.80568 6.94625 7.03043 8.08926 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.001798 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.585674 B =15568.599638 C =16258.924766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.060 3.940 3 H 0.111 0.889 4 O -0.346 6.346 5 C 0.521 3.479 6 O -0.560 6.560 7 C -0.293 4.293 8 C -0.041 4.041 9 C -0.203 4.203 10 C 0.104 3.896 11 C -0.455 4.455 12 H 0.096 0.904 13 C 0.033 3.967 14 N -0.791 5.791 15 Si 0.993 3.007 16 H -0.252 1.252 17 H -0.263 1.263 18 H -0.261 1.261 19 C -0.248 4.248 20 C -0.019 4.019 21 C 0.521 3.479 22 O -0.564 6.564 23 N -0.703 5.703 24 C 0.125 3.875 25 C 0.066 3.934 26 H 0.099 0.901 27 C -0.148 4.148 28 C -0.152 4.152 29 C 0.037 3.963 30 O -0.397 6.397 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.300 0.700 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.418 0.582 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.075 0.925 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 5.366 23.713 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.002 3.998 3 H 0.129 0.871 4 O -0.263 6.263 5 C 0.373 3.627 6 O -0.455 6.455 7 C -0.295 4.295 8 C -0.060 4.060 9 C -0.222 4.222 10 C 0.101 3.899 11 C -0.482 4.482 12 H 0.114 0.886 13 C -0.187 4.187 14 N -0.414 5.414 15 Si 0.812 3.188 16 H -0.175 1.175 17 H -0.187 1.187 18 H -0.186 1.186 19 C -0.267 4.267 20 C -0.038 4.038 21 C 0.307 3.693 22 O -0.442 6.442 23 N -0.358 5.358 24 C 0.002 3.998 25 C 0.008 3.992 26 H 0.116 0.884 27 C -0.186 4.186 28 C -0.189 4.189 29 C -0.039 4.039 30 O -0.317 6.317 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.256 0.744 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.093 0.907 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.613 4.841 23.551 24.481 hybrid contribution 0.086 -0.089 -0.312 0.336 sum -4.526 4.752 23.239 24.148 Atomic orbital electron populations 1.22140 0.89606 1.04149 1.05300 1.22636 0.97852 0.97406 0.81954 0.87093 1.86708 1.77933 1.41697 1.19924 1.21360 0.73361 0.84520 0.83410 1.90652 1.53311 1.16631 1.84909 1.18427 1.24032 0.94659 0.92384 1.20746 0.94851 0.93223 0.97202 1.20993 1.08733 1.00038 0.92478 1.18214 0.86447 0.92111 0.93168 1.20296 1.29575 0.95050 1.03239 0.88592 1.27100 0.94396 0.98132 0.99072 1.69779 1.23667 1.12526 1.35416 0.84988 0.78598 0.78120 0.77123 1.17459 1.18733 1.18552 1.20880 1.12216 0.95495 0.98096 1.20517 0.93831 0.98191 0.91251 1.20287 0.79198 0.84812 0.85053 1.90731 1.41268 1.25146 1.87056 1.45613 1.57682 1.28303 1.04162 1.21588 0.99757 0.96206 0.82269 1.23369 0.98226 0.83662 0.93909 0.88377 1.22946 1.02821 0.98747 0.94091 1.22946 1.03017 0.93594 0.99393 1.23605 1.02597 0.97493 0.80252 1.89226 1.79934 1.34509 1.27994 0.91236 0.86430 0.91450 0.87556 0.87043 0.88902 0.86387 0.86516 0.74429 0.92409 0.89221 0.90747 0.88057 0.90748 0.88472 0.90688 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.50 71.98 0.68 -2.99 16 2 C 0.06 1.89 2.98 29.85 0.09 1.98 16 3 H 0.11 3.38 7.16 -2.39 -0.02 3.37 16 4 O -0.35 -14.71 8.65 -50.44 -0.44 -15.15 16 5 C 0.52 24.05 7.86 70.27 0.55 24.61 16 6 O -0.56 -25.86 15.58 19.80 0.31 -25.55 16 7 C -0.29 -14.57 5.89 -19.94 -0.12 -14.69 16 8 C -0.04 -2.11 9.55 22.26 0.21 -1.90 16 9 C -0.20 -10.84 8.63 22.47 0.19 -10.65 16 10 C 0.10 5.51 5.58 -21.28 -0.12 5.39 16 11 C -0.46 -22.86 9.04 23.46 0.21 -22.65 16 12 H 0.10 4.51 7.91 -2.91 -0.02 4.48 16 13 C 0.03 1.55 5.13 85.36 0.44 1.99 16 14 N -0.79 -38.70 10.95 21.88 0.24 -38.46 16 15 Si 0.99 34.69 29.60 68.60 2.03 36.72 16 16 H -0.25 -8.53 7.11 99.48 0.71 -7.83 16 17 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 18 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 19 C -0.25 -12.19 9.73 22.47 0.22 -11.97 16 20 C -0.02 -0.94 9.52 22.26 0.21 -0.72 16 21 C 0.52 15.94 7.18 87.66 0.63 16.57 16 22 O -0.56 -22.71 16.51 15.71 0.26 -22.45 16 23 N -0.70 -14.50 5.48 -463.06 -2.54 -17.04 16 24 C 0.12 2.25 5.29 86.38 0.46 2.71 16 25 C 0.07 0.79 3.33 31.10 0.10 0.90 16 26 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 27 C -0.15 -1.28 6.63 31.61 0.21 -1.07 16 28 C -0.15 -1.10 7.09 31.61 0.22 -0.88 16 29 C 0.04 0.36 7.62 72.49 0.55 0.91 16 30 O -0.40 -6.41 11.33 -148.98 -1.69 -8.09 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.12 1.69 7.92 -2.39 -0.02 1.67 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 5.25 7.59 -2.91 -0.02 5.22 16 35 H 0.11 6.06 6.15 -2.91 -0.02 6.04 16 36 H 0.30 12.96 8.29 -92.71 -0.77 12.20 16 37 H 0.12 5.26 8.06 -2.91 -0.02 5.23 16 38 H 0.12 5.21 7.63 -2.91 -0.02 5.19 16 39 H 0.42 6.20 8.25 -92.71 -0.77 5.44 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 0.77 7.87 -2.39 -0.02 0.75 16 43 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 45 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -70.41 398.26 3.16 -67.25 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: 0.23 Total: 35.23 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 4.75 Total: -12.46 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -2.30 Total: -55.50 kcal Atomic # 8 Polarization: -69.68 SS G_CDS: -1.56 Total: -71.24 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Total: -70.41 3.16 -67.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758688349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.736 kcal (2) G-P(sol) polarization free energy of solvation -70.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds