Wall clock time and date at job start Wed Apr 1 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20757 * 120.00082 * 2 1 4 4 C 1.50702 * 119.99668 * 180.02562 * 2 1 3 5 5 C 1.53008 * 109.46709 * 179.97438 * 4 2 1 6 6 H 1.08995 * 109.67942 * 299.50716 * 5 4 2 7 7 C 1.53292 * 109.68190 * 60.02501 * 5 4 2 8 8 O 1.42958 * 109.22491 * 172.02526 * 7 5 4 9 9 C 1.42966 * 114.16562 * 297.41723 * 8 7 5 10 10 C 1.53296 * 109.22018 * 62.57855 * 9 8 7 11 11 N 1.47147 * 109.67838 * 178.95236 * 5 4 2 12 12 C 1.34773 * 120.98602 * 9.71888 * 11 5 4 13 13 O 1.21282 * 120.00064 * 5.39687 * 12 11 5 14 14 C 1.50703 * 120.00162 * 185.39902 * 12 11 5 15 15 C 1.50700 * 109.47086 * 180.02562 * 14 12 11 16 16 C 1.38318 * 119.96590 * 90.00145 * 15 14 12 17 17 C 1.38276 * 120.13747 * 179.97438 * 16 15 14 18 18 C 1.38122 * 120.07165 * 359.97438 * 17 16 15 19 19 C 1.38860 * 119.92867 * 0.02562 * 18 17 16 20 20 O 1.35755 * 120.06691 * 179.97438 * 19 18 17 21 21 C 1.34824 * 117.00073 * 5.26071 * 20 19 18 22 22 H 1.08005 * 120.00290 * 354.97262 * 21 20 19 23 23 C 1.38654 * 119.99714 * 174.96666 * 21 20 19 24 24 N 1.31551 * 120.00360 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99947 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47043 * 59.99949 * 25 23 21 27 27 H 1.48492 * 109.47329 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46901 * 300.00433 * 25 23 21 29 29 C 1.38073 * 119.96293 * 269.72480 * 15 14 12 30 30 H 1.09006 * 109.46834 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46695 * 299.98906 * 1 2 3 32 32 H 1.08992 * 109.47499 * 59.99112 * 1 2 3 33 33 H 1.09004 * 109.47378 * 59.99846 * 4 2 1 34 34 H 1.08995 * 109.47124 * 299.99244 * 4 2 1 35 35 H 1.09001 * 109.51369 * 52.09990 * 7 5 4 36 36 H 1.09008 * 109.51570 * 291.95019 * 7 5 4 37 37 H 1.08998 * 109.51322 * 182.50476 * 9 8 7 38 38 H 1.08996 * 109.51480 * 302.66009 * 9 8 7 39 39 H 1.08998 * 109.67985 * 187.96978 * 10 9 8 40 40 H 1.09000 * 109.71111 * 67.43990 * 10 9 8 41 41 H 1.09000 * 109.47027 * 299.99852 * 14 12 11 42 42 H 1.09000 * 109.47136 * 59.99988 * 14 12 11 43 43 H 1.08001 * 119.93637 * 0.02562 * 16 15 14 44 44 H 1.08004 * 119.96735 * 180.02562 * 17 16 15 45 45 H 1.08004 * 120.03613 * 180.02562 * 18 17 16 46 46 H 0.96996 * 120.00104 * 179.97438 * 24 23 21 47 47 H 1.08007 * 120.04078 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7648 -1.0256 -0.0011 6 1 4.0329 -0.4613 -0.8943 7 6 4.1411 -0.2225 1.2492 8 8 5.5648 -0.1265 1.3362 9 6 6.2282 -1.3841 1.4852 10 6 5.9587 -2.2467 0.2470 11 7 4.5051 -2.2970 0.0237 12 6 3.8706 -3.4729 -0.1524 13 8 2.6905 -3.4893 -0.4317 14 6 4.6274 -4.7674 -0.0023 15 6 3.6954 -5.9257 -0.2489 16 6 3.5442 -6.4306 -1.5278 17 6 2.6904 -7.4936 -1.7580 18 6 1.9861 -8.0550 -0.7108 19 6 2.1358 -7.5504 0.5741 20 8 1.4445 -8.0997 1.6053 21 6 0.7140 -9.2003 1.3352 22 1 0.6321 -9.5583 0.3195 23 6 0.0680 -9.8725 2.3615 24 7 0.1673 -9.4363 3.5986 25 14 -0.9436 -11.3978 1.9874 26 1 -0.0718 -12.4318 1.3741 27 1 -1.5277 -11.9255 3.2465 28 1 -2.0358 -11.0483 1.0439 29 6 2.9978 -6.4855 0.8029 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 1.9971 -1.8764 -0.8908 34 1 1.9972 -1.8770 0.8892 35 1 3.7554 -0.7265 2.1354 36 1 3.7121 0.7774 1.1826 37 1 7.3008 -1.2199 1.5883 38 1 5.8500 -1.8923 2.3722 39 1 6.3401 -3.2544 0.4116 40 1 6.4485 -1.8062 -0.6215 41 1 5.4429 -4.7974 -0.7249 42 1 5.0336 -4.8359 1.0069 43 1 4.0947 -5.9942 -2.3481 44 1 2.5747 -7.8859 -2.7576 45 1 1.3197 -8.8856 -0.8913 46 1 -0.2850 -9.9064 4.3164 47 1 3.1193 -6.0935 1.8019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773880871.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:38 Heat of formation + Delta-G solvation = -96.332891 kcal Electronic energy + Delta-G solvation = -30697.432302 eV Core-core repulsion = 26426.282369 eV Total energy + Delta-G solvation = -4271.149933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.06792 -39.48929 -38.98480 -38.32873 -36.52033 -34.93918 -33.59238 -32.31908 -31.74861 -30.84266 -29.30005 -28.82217 -27.08302 -26.60602 -25.25323 -23.63594 -22.56510 -21.61869 -20.82086 -19.91453 -19.26210 -17.65085 -17.28715 -17.04051 -16.78295 -16.55233 -15.85527 -15.66848 -15.33336 -15.13661 -15.07271 -14.86711 -14.54766 -14.43178 -14.34350 -13.81153 -13.68686 -13.47504 -13.29078 -12.93495 -12.60691 -12.52250 -12.45268 -12.42482 -12.04639 -11.89498 -11.69699 -11.55528 -11.48747 -11.24651 -11.10621 -10.82706 -10.77806 -10.63417 -10.47883 -10.45821 -10.00823 -9.34267 -9.04350 -8.82828 -8.70692 -8.07142 -7.22082 -6.43736 -4.02963 1.76657 2.05450 2.38274 2.57980 2.69603 3.13546 3.14456 3.17149 3.50727 3.97081 3.99664 4.33895 4.37865 4.60951 4.62668 4.75714 4.82277 4.87042 4.91959 4.95489 5.01406 5.09980 5.16438 5.17665 5.31166 5.33731 5.37995 5.44188 5.47036 5.59975 5.63302 5.73217 5.76154 5.80441 5.86861 5.92680 6.17138 6.31458 6.33303 6.64873 6.81373 6.90874 7.07065 7.17793 7.25522 7.32837 7.36915 7.44081 7.82184 8.01132 8.13406 9.02004 9.72480 10.74387 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.002578 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.550573 B =10860.556860 C =11608.890938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.352 3.648 3 O -0.470 6.470 4 C -0.172 4.172 5 C 0.126 3.874 6 H 0.083 0.917 7 C 0.044 3.956 8 O -0.377 6.377 9 C 0.042 3.958 10 C 0.073 3.927 11 N -0.623 5.623 12 C 0.522 3.478 13 O -0.513 6.513 14 C -0.094 4.094 15 C -0.033 4.033 16 C -0.196 4.196 17 C -0.074 4.074 18 C -0.230 4.230 19 C 0.155 3.845 20 O -0.179 6.179 21 C -0.392 4.392 22 H 0.091 0.909 23 C 0.040 3.960 24 N -0.864 5.864 25 Si 0.940 3.060 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.270 1.270 29 C -0.175 4.175 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.142 0.858 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.270 0.730 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.528 15.272 -6.692 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.230 3.770 3 O -0.346 6.346 4 C -0.209 4.209 5 C 0.023 3.977 6 H 0.101 0.899 7 C -0.034 4.034 8 O -0.295 6.295 9 C -0.035 4.035 10 C -0.050 4.050 11 N -0.359 5.359 12 C 0.311 3.689 13 O -0.388 6.388 14 C -0.134 4.134 15 C -0.034 4.034 16 C -0.215 4.215 17 C -0.092 4.092 18 C -0.250 4.250 19 C 0.102 3.898 20 O -0.083 6.083 21 C -0.468 4.468 22 H 0.108 0.892 23 C -0.165 4.165 24 N -0.499 5.499 25 Si 0.765 3.235 26 H -0.195 1.195 27 H -0.203 1.203 28 H -0.195 1.195 29 C -0.194 4.194 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.160 0.840 34 H 0.125 0.875 35 H 0.070 0.930 36 H 0.141 0.859 37 H 0.124 0.876 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.080 0.920 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.178 15.950 -6.366 19.472 hybrid contribution -0.654 -1.203 -0.221 1.387 sum 8.525 14.747 -6.587 18.263 Atomic orbital electron populations 1.22237 0.94167 1.05209 1.04515 1.25025 0.92499 0.90336 0.69154 1.90335 1.71680 1.35656 1.36973 1.22890 0.92928 0.96422 1.08690 1.21690 0.91749 0.84438 0.99837 0.89873 1.23398 0.81291 1.02909 0.95764 1.87997 1.19004 1.28550 1.93964 1.23019 0.98621 0.85414 0.96474 1.22471 0.80796 1.02385 0.99341 1.48300 1.08198 1.05817 1.73613 1.20812 0.87798 0.84469 0.75809 1.90685 1.15722 1.86237 1.46147 1.20655 0.98168 0.90477 1.04081 1.18628 0.96825 0.94482 0.93420 1.20330 1.04858 1.00997 0.95333 1.20677 0.95506 0.95456 0.97588 1.21179 1.06006 1.04981 0.92796 1.19269 0.90278 0.92282 0.88009 1.83974 1.53379 1.39839 1.31111 1.21266 1.27533 1.02664 0.95343 0.89176 1.25265 0.97767 0.98977 0.94443 1.70024 1.41191 1.39370 0.99355 0.85800 0.79510 0.80184 0.78050 1.19522 1.20301 1.19519 1.19921 1.01201 0.99723 0.98554 0.89494 0.89048 0.89101 0.84015 0.87509 0.92996 0.85888 0.87568 0.92380 0.88273 0.90346 0.88411 0.88290 0.88012 0.87505 0.85637 0.92028 0.86949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 10.33 36.01 0.37 -1.30 16 2 C 0.35 3.70 6.99 -29.03 -0.20 3.50 16 3 O -0.47 -5.94 14.47 6.00 0.09 -5.85 16 4 C -0.17 -1.97 3.55 -27.88 -0.10 -2.07 16 5 C 0.13 1.42 2.84 -67.42 -0.19 1.22 16 6 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 7 C 0.04 0.48 5.83 37.31 0.22 0.70 16 8 O -0.38 -4.15 10.74 -35.23 -0.38 -4.53 16 9 C 0.04 0.34 6.99 37.31 0.26 0.60 16 10 C 0.07 0.57 6.55 -3.53 -0.02 0.54 16 11 N -0.62 -6.78 3.02 -164.75 -0.50 -7.28 16 12 C 0.52 6.98 7.53 -10.99 -0.08 6.90 16 13 O -0.51 -8.50 11.79 5.56 0.07 -8.44 16 14 C -0.09 -1.17 4.20 -29.03 -0.12 -1.29 16 15 C -0.03 -0.57 4.37 -104.65 -0.46 -1.03 16 16 C -0.20 -3.39 9.70 -39.54 -0.38 -3.77 16 17 C -0.07 -1.37 10.04 -39.61 -0.40 -1.77 16 18 C -0.23 -5.05 9.17 -39.39 -0.36 -5.41 16 19 C 0.15 3.76 6.65 -39.10 -0.26 3.50 16 20 O -0.18 -5.14 9.76 0.05 0.00 -5.13 16 21 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 22 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 23 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 24 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 25 Si 0.94 20.49 29.55 -169.99 -5.02 15.47 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 29 C -0.17 -3.67 9.64 -39.40 -0.38 -4.05 16 30 H 0.09 0.69 8.00 -51.93 -0.42 0.28 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.14 1.82 6.02 -51.93 -0.31 1.51 16 34 H 0.11 1.32 7.52 -51.93 -0.39 0.93 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.12 1.43 5.78 -51.92 -0.30 1.13 16 37 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.58 6.04 -51.93 -0.31 0.26 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.94 7.75 -51.93 -0.40 0.54 16 42 H 0.10 1.06 7.82 -51.93 -0.41 0.65 16 43 H 0.10 1.49 8.06 -52.49 -0.42 1.06 16 44 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 45 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 46 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.11 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -34.04 382.87 -7.60 -41.64 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.47 Total: 6.31 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.91 Total: -13.41 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.26 Total: -31.82 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.23 Total: -23.95 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.04 -7.60 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773880871.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.695 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds