Wall clock time and date at job start Wed Apr 1 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20757 * 120.00082 * 2 1 4 4 C 1.50702 * 119.99668 * 180.02562 * 2 1 3 5 5 C 1.53008 * 109.46709 * 179.97438 * 4 2 1 6 6 H 1.08995 * 109.67942 * 299.50716 * 5 4 2 7 7 C 1.53292 * 109.68190 * 60.02501 * 5 4 2 8 8 O 1.42958 * 109.22491 * 172.02526 * 7 5 4 9 9 C 1.42966 * 114.16562 * 297.41723 * 8 7 5 10 10 C 1.53296 * 109.22018 * 62.57855 * 9 8 7 11 11 N 1.47147 * 109.67838 * 178.95236 * 5 4 2 12 12 C 1.34773 * 120.98602 * 9.71888 * 11 5 4 13 13 O 1.21282 * 120.00064 * 5.39687 * 12 11 5 14 14 C 1.50703 * 120.00162 * 185.39902 * 12 11 5 15 15 C 1.50700 * 109.47086 * 180.02562 * 14 12 11 16 16 C 1.38318 * 119.96590 * 90.00145 * 15 14 12 17 17 C 1.38276 * 120.13747 * 179.97438 * 16 15 14 18 18 C 1.38122 * 120.07165 * 359.97438 * 17 16 15 19 19 C 1.38860 * 119.92867 * 0.02562 * 18 17 16 20 20 O 1.35755 * 120.06691 * 179.97438 * 19 18 17 21 21 C 1.34824 * 117.00073 * 5.26071 * 20 19 18 22 22 H 1.08005 * 120.00290 * 354.97262 * 21 20 19 23 23 C 1.38654 * 119.99714 * 174.96666 * 21 20 19 24 24 N 1.31551 * 120.00360 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99947 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47043 * 59.99949 * 25 23 21 27 27 H 1.48492 * 109.47329 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46901 * 300.00433 * 25 23 21 29 29 C 1.38073 * 119.96293 * 269.72480 * 15 14 12 30 30 H 1.09006 * 109.46834 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46695 * 299.98906 * 1 2 3 32 32 H 1.08992 * 109.47499 * 59.99112 * 1 2 3 33 33 H 1.09004 * 109.47378 * 59.99846 * 4 2 1 34 34 H 1.08995 * 109.47124 * 299.99244 * 4 2 1 35 35 H 1.09001 * 109.51369 * 52.09990 * 7 5 4 36 36 H 1.09008 * 109.51570 * 291.95019 * 7 5 4 37 37 H 1.08998 * 109.51322 * 182.50476 * 9 8 7 38 38 H 1.08996 * 109.51480 * 302.66009 * 9 8 7 39 39 H 1.08998 * 109.67985 * 187.96978 * 10 9 8 40 40 H 1.09000 * 109.71111 * 67.43990 * 10 9 8 41 41 H 1.09000 * 109.47027 * 299.99852 * 14 12 11 42 42 H 1.09000 * 109.47136 * 59.99988 * 14 12 11 43 43 H 1.08001 * 119.93637 * 0.02562 * 16 15 14 44 44 H 1.08004 * 119.96735 * 180.02562 * 17 16 15 45 45 H 1.08004 * 120.03613 * 180.02562 * 18 17 16 46 46 H 0.96996 * 120.00104 * 179.97438 * 24 23 21 47 47 H 1.08007 * 120.04078 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7648 -1.0256 -0.0011 6 1 4.0329 -0.4613 -0.8943 7 6 4.1411 -0.2225 1.2492 8 8 5.5648 -0.1265 1.3362 9 6 6.2282 -1.3841 1.4852 10 6 5.9587 -2.2467 0.2470 11 7 4.5051 -2.2970 0.0237 12 6 3.8706 -3.4729 -0.1524 13 8 2.6905 -3.4893 -0.4317 14 6 4.6274 -4.7674 -0.0023 15 6 3.6954 -5.9257 -0.2489 16 6 3.5442 -6.4306 -1.5278 17 6 2.6904 -7.4936 -1.7580 18 6 1.9861 -8.0550 -0.7108 19 6 2.1358 -7.5504 0.5741 20 8 1.4445 -8.0997 1.6053 21 6 0.7140 -9.2003 1.3352 22 1 0.6321 -9.5583 0.3195 23 6 0.0680 -9.8725 2.3615 24 7 0.1673 -9.4363 3.5986 25 14 -0.9436 -11.3978 1.9874 26 1 -0.0718 -12.4318 1.3741 27 1 -1.5277 -11.9255 3.2465 28 1 -2.0358 -11.0483 1.0439 29 6 2.9978 -6.4855 0.8029 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 1.9971 -1.8764 -0.8908 34 1 1.9972 -1.8770 0.8892 35 1 3.7554 -0.7265 2.1354 36 1 3.7121 0.7774 1.1826 37 1 7.3008 -1.2199 1.5883 38 1 5.8500 -1.8923 2.3722 39 1 6.3401 -3.2544 0.4116 40 1 6.4485 -1.8062 -0.6215 41 1 5.4429 -4.7974 -0.7249 42 1 5.0336 -4.8359 1.0069 43 1 4.0947 -5.9942 -2.3481 44 1 2.5747 -7.8859 -2.7576 45 1 1.3197 -8.8856 -0.8913 46 1 -0.2850 -9.9064 4.3164 47 1 3.1193 -6.0935 1.8019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773880871.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:37 Heat of formation + Delta-G solvation = -118.663921 kcal Electronic energy + Delta-G solvation = -30698.400648 eV Core-core repulsion = 26426.282369 eV Total energy + Delta-G solvation = -4272.118279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.00522 -40.80196 -40.23687 -39.35068 -38.16184 -35.86790 -34.60648 -34.24585 -33.02939 -31.60535 -30.87594 -29.76395 -28.31753 -27.51809 -27.19742 -24.44653 -23.61136 -23.16178 -22.29326 -20.78873 -20.30825 -19.41882 -18.72721 -18.16865 -17.77226 -17.39939 -16.89030 -16.64096 -16.55219 -16.31107 -16.16456 -16.08403 -15.95982 -15.61268 -15.46863 -15.28308 -14.94855 -14.70210 -14.47056 -14.22514 -13.94558 -13.72611 -13.57263 -13.28106 -13.18047 -12.98189 -12.83679 -12.79498 -12.50408 -12.44302 -12.34496 -12.28102 -12.20355 -12.11931 -11.91826 -11.31226 -11.18502 -10.91294 -10.78300 -10.06196 -9.60240 -9.58112 -8.95510 -8.45700 -6.14088 0.53309 0.78280 0.89819 1.34925 1.45578 1.51105 1.57218 1.77893 2.18603 2.75927 2.83655 3.12861 3.21560 3.45308 3.56306 3.58784 3.84282 3.88777 3.96418 4.02877 4.11989 4.18145 4.23149 4.27000 4.33069 4.40493 4.43102 4.57081 4.58563 4.61029 4.63236 4.67547 4.75976 4.80761 4.84647 4.91323 4.96147 5.08243 5.11132 5.14389 5.32513 5.42805 5.67289 5.74984 5.77767 6.04229 6.05853 6.21721 6.32750 6.46909 6.99083 7.14017 7.80800 8.77454 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.002578 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.550573 B =10860.556860 C =11608.890938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.357 3.643 3 O -0.491 6.491 4 C -0.165 4.165 5 C 0.127 3.873 6 H 0.081 0.919 7 C 0.051 3.949 8 O -0.393 6.393 9 C 0.036 3.964 10 C 0.068 3.932 11 N -0.616 5.616 12 C 0.520 3.480 13 O -0.555 6.555 14 C -0.092 4.092 15 C -0.023 4.023 16 C -0.178 4.178 17 C -0.073 4.073 18 C -0.246 4.246 19 C 0.113 3.887 20 O -0.234 6.234 21 C -0.414 4.414 22 H 0.100 0.900 23 C -0.022 4.022 24 N -0.921 5.921 25 Si 1.017 2.983 26 H -0.256 1.256 27 H -0.271 1.271 28 H -0.259 1.259 29 C -0.190 4.190 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.055 0.945 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.142 0.858 42 H 0.120 0.880 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.116 0.884 46 H 0.272 0.728 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.581 15.732 -9.127 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.236 3.764 3 O -0.369 6.369 4 C -0.202 4.202 5 C 0.023 3.977 6 H 0.098 0.902 7 C -0.026 4.026 8 O -0.312 6.312 9 C -0.041 4.041 10 C -0.054 4.054 11 N -0.351 5.351 12 C 0.310 3.690 13 O -0.433 6.433 14 C -0.131 4.131 15 C -0.023 4.023 16 C -0.197 4.197 17 C -0.091 4.091 18 C -0.266 4.266 19 C 0.063 3.937 20 O -0.141 6.141 21 C -0.490 4.490 22 H 0.117 0.883 23 C -0.220 4.220 24 N -0.560 5.560 25 Si 0.836 3.164 26 H -0.181 1.181 27 H -0.196 1.196 28 H -0.183 1.183 29 C -0.209 4.209 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.147 0.853 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.153 0.847 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.112 0.888 41 H 0.160 0.840 42 H 0.138 0.862 43 H 0.163 0.837 44 H 0.161 0.839 45 H 0.134 0.866 46 H 0.081 0.919 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.297 16.447 -8.840 21.824 hybrid contribution -1.042 -1.107 0.357 1.562 sum 10.255 15.340 -8.484 20.309 Atomic orbital electron populations 1.22244 0.92224 1.05656 1.05647 1.25184 0.93504 0.89528 0.68154 1.90333 1.72308 1.36109 1.38149 1.22734 0.93535 0.96550 1.07403 1.21654 0.91589 0.84656 0.99785 0.90150 1.23230 0.81760 1.02230 0.95390 1.87975 1.18646 1.30513 1.94017 1.23283 0.99939 0.84306 0.96532 1.22788 0.78652 1.04108 0.99828 1.48319 1.09600 1.04875 1.72353 1.20937 0.87340 0.85282 0.75474 1.90696 1.17419 1.86881 1.48287 1.20758 0.97829 0.87680 1.06790 1.19108 0.95833 0.94944 0.92431 1.20937 1.03095 0.99289 0.96338 1.21111 0.94474 0.95365 0.98168 1.21290 1.06918 1.05343 0.93014 1.19868 0.91622 0.93772 0.88431 1.83933 1.55695 1.41149 1.33359 1.21767 1.27977 1.03133 0.96151 0.88288 1.26561 0.98912 1.02477 0.94013 1.70173 1.43495 1.41653 1.00644 0.84674 0.77839 0.75615 0.78252 1.18074 1.19584 1.18311 1.20182 1.01571 0.99395 0.99743 0.89418 0.87914 0.87789 0.85255 0.88868 0.93411 0.86831 0.84691 0.92625 0.85587 0.88823 0.84041 0.86230 0.83661 0.83912 0.86624 0.91891 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.17 10.33 71.24 0.74 -2.44 16 2 C 0.36 7.49 6.99 29.10 0.20 7.69 16 3 O -0.49 -12.34 14.47 -1.44 -0.02 -12.36 16 4 C -0.16 -3.78 3.55 29.85 0.11 -3.68 16 5 C 0.13 2.73 2.84 44.97 0.13 2.85 16 6 H 0.08 1.79 8.11 -2.39 -0.02 1.77 16 7 C 0.05 1.10 5.83 72.08 0.42 1.52 16 8 O -0.39 -7.99 10.74 -148.98 -1.60 -9.59 16 9 C 0.04 0.47 6.99 72.08 0.50 0.97 16 10 C 0.07 0.78 6.55 86.35 0.57 1.35 16 11 N -0.62 -11.91 3.02 -793.53 -2.40 -14.31 16 12 C 0.52 12.66 7.53 87.66 0.66 13.32 16 13 O -0.55 -17.90 11.79 -3.03 -0.04 -17.93 16 14 C -0.09 -1.91 4.20 29.10 0.12 -1.79 16 15 C -0.02 -0.73 4.37 -19.88 -0.09 -0.81 16 16 C -0.18 -5.44 9.70 22.30 0.22 -5.23 16 17 C -0.07 -2.53 10.04 22.25 0.22 -2.31 16 18 C -0.25 -10.95 9.17 22.39 0.21 -10.74 16 19 C 0.11 5.73 6.65 22.58 0.15 5.88 16 20 O -0.23 -14.36 9.76 -22.74 -0.22 -14.58 16 21 C -0.41 -24.48 9.49 67.92 0.64 -23.84 16 22 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 23 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 24 N -0.92 -56.96 13.67 21.61 0.30 -56.66 16 25 Si 1.02 43.16 29.55 68.60 2.03 45.18 16 26 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 29 C -0.19 -8.09 9.64 22.39 0.22 -7.87 16 30 H 0.09 1.38 8.00 -2.38 -0.02 1.36 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.13 3.36 6.02 -2.43 -0.01 3.35 16 34 H 0.09 2.39 7.52 -2.39 -0.02 2.38 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 2.65 5.78 -2.38 -0.01 2.64 16 37 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.13 0.79 6.04 -2.39 -0.01 0.78 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.14 1.79 7.75 -2.39 -0.02 1.77 16 42 H 0.12 2.09 7.82 -2.39 -0.02 2.07 16 43 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 44 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 45 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 46 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 47 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -80.87 382.87 4.52 -76.35 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 1.00 Total: 29.84 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 5.48 Total: -25.95 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -2.10 Total: -70.97 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -1.88 Total: -54.46 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -80.87 4.52 -76.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773880871.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.316 kcal (2) G-P(sol) polarization free energy of solvation -80.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds