Wall clock time and date at job start Wed Apr 1 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47531 * 2 1 4 4 O 1.45198 * 109.46802 * 239.99811 * 2 1 3 5 5 C 1.34232 * 116.99725 * 90.00190 * 4 2 1 6 6 O 1.20821 * 120.00331 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99899 * 179.97438 * 5 4 2 8 8 C 1.53007 * 109.47056 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.46979 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00377 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00328 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99181 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00442 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46945 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46962 * 120.00150 * 13 11 9 16 16 H 1.48499 * 109.47147 * 240.00019 * 13 11 9 17 17 C 1.50703 * 109.46911 * 120.00325 * 2 1 3 18 18 O 1.21284 * 119.99910 * 115.00193 * 17 2 1 19 19 N 1.34777 * 119.99795 * 294.99121 * 17 2 1 20 20 C 1.46501 * 119.99756 * 180.02562 * 19 17 2 21 21 H 1.08996 * 109.40178 * 34.89542 * 20 19 17 22 22 C 1.53075 * 109.43569 * 154.79127 * 20 19 17 23 23 C 1.53406 * 108.29357 * 168.24835 * 22 20 19 24 24 O 1.42836 * 108.37202 * 295.26017 * 23 22 20 25 25 C 1.35847 * 117.85815 * 49.16502 * 24 23 22 26 26 C 1.39147 * 118.49505 * 162.99697 * 25 24 23 27 27 C 1.37963 * 120.21188 * 179.75491 * 26 25 24 28 28 C 1.38291 * 119.96265 * 359.97438 * 27 26 25 29 29 C 1.38106 * 119.97917 * 0.34123 * 28 27 26 30 30 C 1.38369 * 121.80888 * 342.88812 * 25 24 23 31 31 H 1.09003 * 109.47377 * 59.99849 * 1 2 3 32 32 H 1.09004 * 109.47737 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46978 * 300.00033 * 1 2 3 34 34 H 1.09004 * 109.47367 * 299.99885 * 7 5 4 35 35 H 1.09004 * 109.47248 * 60.00273 * 7 5 4 36 36 H 1.08994 * 109.46924 * 300.00041 * 8 7 5 37 37 H 1.08996 * 109.46544 * 59.99939 * 8 7 5 38 38 H 0.97002 * 119.99396 * 179.97438 * 12 11 9 39 39 H 0.96996 * 119.99760 * 0.02562 * 19 17 2 40 40 H 1.08996 * 109.69608 * 287.94554 * 22 20 19 41 41 H 1.09003 * 109.69430 * 48.54620 * 22 20 19 42 42 H 1.09001 * 109.68751 * 54.98441 * 23 22 20 43 43 H 1.08999 * 109.68273 * 175.54518 * 23 22 20 44 44 H 1.07995 * 119.89186 * 359.76684 * 26 25 24 45 45 H 1.08001 * 120.02156 * 180.02562 * 27 26 25 46 46 H 1.07998 * 120.01243 * 180.02562 * 28 27 26 47 47 H 1.08004 * 119.84111 * 179.75515 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6845 -1.1855 5 6 2.2170 0.0640 -2.2811 6 8 1.9982 1.2518 -2.2504 7 6 2.7191 -0.5771 -3.5492 8 6 2.8630 0.4890 -4.6373 9 6 3.3657 -0.1519 -5.9051 10 1 3.5625 -1.2135 -5.9323 11 6 3.5745 0.6169 -7.0305 12 7 3.3354 1.9097 -6.9971 13 14 4.1970 -0.1777 -8.6022 14 1 4.3871 -1.6335 -8.3792 15 1 3.2066 0.0321 -9.6887 16 1 5.4926 0.4368 -8.9881 17 6 2.0323 -0.7105 1.2305 18 8 2.6529 -1.7468 1.1214 19 7 1.7919 -0.1942 2.4520 20 6 2.2807 -0.8846 3.6481 21 1 3.2400 -1.3534 3.4290 22 6 2.4554 0.1264 4.7841 23 6 2.6778 -0.6491 6.0889 24 8 1.4915 -1.3893 6.3805 25 6 0.9510 -2.1398 5.3855 26 6 0.0333 -3.1295 5.7242 27 6 -0.5413 -3.9090 4.7416 28 6 -0.2057 -3.7071 3.4153 29 6 0.7097 -2.7301 3.0762 30 6 1.2874 -1.9423 4.0580 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3635 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 3.6883 -1.0401 -3.3633 35 1 2.0102 -1.3373 -3.8774 36 1 1.8938 0.9516 -4.8231 37 1 3.5716 1.2495 -4.3093 38 1 3.4826 2.4507 -7.7887 39 1 1.2954 0.6344 2.5391 40 1 3.3185 0.7606 4.5820 41 1 1.5593 0.7409 4.8700 42 1 3.5179 -1.3335 5.9707 43 1 2.8837 0.0490 6.9003 44 1 -0.2301 -3.2877 6.7595 45 1 -1.2535 -4.6760 5.0079 46 1 -0.6553 -4.3166 2.6454 47 1 0.9732 -2.5769 2.0400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:59 Heat of formation + Delta-G solvation = -141.580868 kcal Electronic energy + Delta-G solvation = -30030.256657 eV Core-core repulsion = 25757.144624 eV Total energy + Delta-G solvation = -4273.112033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.44395 -40.44776 -39.38205 -37.80428 -36.40779 -35.78910 -33.62186 -33.07851 -31.61312 -31.01881 -30.80269 -30.37998 -26.26578 -26.05454 -24.55185 -24.02714 -22.74387 -22.14607 -20.76970 -20.50579 -19.84189 -18.19828 -17.81593 -17.62668 -16.94380 -16.74431 -16.40783 -16.10020 -15.88148 -15.44045 -15.23949 -14.97684 -14.60440 -14.47411 -14.11266 -13.97705 -13.81793 -13.58496 -13.37618 -13.11449 -12.81024 -12.59282 -12.42585 -12.33972 -12.20322 -11.87362 -11.69270 -11.63866 -11.28064 -11.22775 -11.05525 -10.98629 -10.70880 -10.61985 -10.07580 -10.03152 -9.92177 -9.59092 -9.56315 -9.17876 -9.12700 -8.50722 -8.39260 -6.03101 -4.07624 0.95679 1.13701 2.26405 2.31504 2.73688 2.85967 3.25407 3.30437 3.38029 3.42214 3.51205 4.00424 4.15682 4.25131 4.30153 4.43631 4.56334 4.64853 4.70259 4.78681 4.83747 4.92974 4.98207 5.10250 5.12979 5.14224 5.20695 5.32645 5.41012 5.44289 5.49176 5.58277 5.70746 5.87478 5.93357 5.97580 6.11005 6.18518 6.19447 6.30022 6.45590 6.55067 6.85241 7.03556 7.06079 7.64883 7.70831 7.84081 7.96205 8.19089 8.35954 8.99556 9.56573 11.07961 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023854 B = 0.001889 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.525425 B =14821.694036 C =15308.735012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.066 3.934 3 H 0.110 0.890 4 O -0.337 6.337 5 C 0.458 3.542 6 O -0.504 6.504 7 C -0.102 4.102 8 C 0.033 3.967 9 C -0.527 4.527 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.521 3.479 18 O -0.508 6.508 19 N -0.720 5.720 20 C 0.192 3.808 21 H 0.103 0.897 22 C -0.167 4.167 23 C 0.067 3.933 24 O -0.317 6.317 25 C 0.137 3.863 26 C -0.155 4.155 27 C -0.082 4.082 28 C -0.155 4.155 29 C -0.068 4.068 30 C -0.178 4.178 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.404 0.596 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.114 0.886 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.818 -5.962 29.986 31.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.007 3.993 3 H 0.127 0.873 4 O -0.254 6.254 5 C 0.302 3.698 6 O -0.391 6.391 7 C -0.140 4.140 8 C -0.004 4.004 9 C -0.566 4.566 10 H 0.078 0.922 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.306 3.694 18 O -0.382 6.382 19 N -0.374 5.374 20 C 0.088 3.912 21 H 0.121 0.879 22 C -0.205 4.205 23 C -0.009 4.009 24 O -0.231 6.231 25 C 0.092 3.908 26 C -0.174 4.174 27 C -0.100 4.100 28 C -0.173 4.173 29 C -0.086 4.086 30 C -0.180 4.180 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.239 0.761 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.132 0.868 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.475 -6.162 29.991 31.294 hybrid contribution 0.162 0.295 -0.986 1.042 sum -6.313 -5.867 29.004 30.258 Atomic orbital electron populations 1.22145 0.91982 1.03932 1.04081 1.22273 0.95891 0.97808 0.83354 0.87281 1.86742 1.77435 1.41940 1.19249 1.24969 0.73501 0.86392 0.84923 1.90621 1.47862 1.16876 1.83725 1.21805 1.01963 1.02054 0.88148 1.19032 0.98561 0.92428 0.90352 1.21196 1.44867 0.94821 0.95667 0.92188 1.25027 0.95490 0.94832 0.99042 1.70007 1.48432 1.05016 1.29382 0.86475 0.78473 0.79543 0.83147 1.19611 1.20965 1.20974 1.20365 0.79420 0.85450 0.84129 1.90759 1.38552 1.22607 1.86262 1.45909 1.58853 1.27965 1.04698 1.19640 0.96576 0.90813 0.84167 0.87892 1.22521 1.04751 0.98585 0.94683 1.22947 0.85946 0.94541 0.97465 1.85998 1.41594 1.59070 1.36424 1.18681 0.94547 0.91322 0.86243 1.20562 1.00256 0.96161 1.00425 1.20982 0.98381 0.98138 0.92512 1.21114 0.99864 0.99816 0.96489 1.21296 0.94082 0.93236 0.99992 1.20141 1.03713 1.01684 0.92506 0.90131 0.90920 0.90594 0.88708 0.88738 0.95548 0.95579 0.92912 0.76103 0.88670 0.89565 0.91268 0.86787 0.85257 0.85397 0.85751 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.50 37.16 0.35 -1.37 16 2 C 0.07 0.87 2.97 -27.88 -0.08 0.78 16 3 H 0.11 1.41 7.16 -51.93 -0.37 1.03 16 4 O -0.34 -5.77 9.42 -45.89 -0.43 -6.20 16 5 C 0.46 8.96 7.93 36.01 0.29 9.25 16 6 O -0.50 -10.94 15.20 -18.75 -0.28 -11.23 16 7 C -0.10 -2.11 5.75 -27.88 -0.16 -2.27 16 8 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 9 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 10 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 13 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 C 0.52 6.47 5.76 -10.98 -0.06 6.40 16 18 O -0.51 -8.17 14.43 -14.05 -0.20 -8.37 16 19 N -0.72 -6.24 4.82 -54.86 -0.26 -6.51 16 20 C 0.19 1.65 2.70 -69.01 -0.19 1.46 16 21 H 0.10 1.04 7.57 -51.93 -0.39 0.65 16 22 C -0.17 -0.91 5.67 -26.48 -0.15 -1.06 16 23 C 0.07 0.36 7.03 37.37 0.26 0.63 16 24 O -0.32 -2.71 10.27 -19.26 -0.20 -2.91 16 25 C 0.14 1.32 6.47 -39.20 -0.25 1.07 16 26 C -0.16 -1.38 9.94 -39.34 -0.39 -1.77 16 27 C -0.08 -0.68 10.04 -39.66 -0.40 -1.08 16 28 C -0.15 -1.49 10.04 -39.61 -0.40 -1.89 16 29 C -0.07 -0.75 9.08 -39.53 -0.36 -1.11 16 30 C -0.18 -1.79 5.56 -104.44 -0.58 -2.37 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 34 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 35 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.40 2.41 8.36 -40.82 -0.34 2.07 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.43 8.11 -51.93 -0.42 0.01 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.13 1.69 4.70 -52.48 -0.25 1.44 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -35.34 392.79 -9.19 -44.53 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.80 Total: 0.52 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.65 Total: -6.06 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.47 Total: -32.67 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -1.12 Total: -28.71 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.34 -9.19 -44.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.047 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds