Wall clock time and date at job start Wed Apr 1 2020 04:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47531 * 2 1 4 4 O 1.45198 * 109.46802 * 239.99811 * 2 1 3 5 5 C 1.34232 * 116.99725 * 90.00190 * 4 2 1 6 6 O 1.20821 * 120.00331 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99899 * 179.97438 * 5 4 2 8 8 C 1.53007 * 109.47056 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.46979 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00377 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00328 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99181 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00442 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46945 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46962 * 120.00150 * 13 11 9 16 16 H 1.48499 * 109.47147 * 240.00019 * 13 11 9 17 17 C 1.50703 * 109.46911 * 120.00325 * 2 1 3 18 18 O 1.21284 * 119.99910 * 115.00193 * 17 2 1 19 19 N 1.34777 * 119.99795 * 294.99121 * 17 2 1 20 20 C 1.46501 * 119.99756 * 180.02562 * 19 17 2 21 21 H 1.08996 * 109.40178 * 34.89542 * 20 19 17 22 22 C 1.53075 * 109.43569 * 154.79127 * 20 19 17 23 23 C 1.53406 * 108.29357 * 168.24835 * 22 20 19 24 24 O 1.42836 * 108.37202 * 295.26017 * 23 22 20 25 25 C 1.35847 * 117.85815 * 49.16502 * 24 23 22 26 26 C 1.39147 * 118.49505 * 162.99697 * 25 24 23 27 27 C 1.37963 * 120.21188 * 179.75491 * 26 25 24 28 28 C 1.38291 * 119.96265 * 359.97438 * 27 26 25 29 29 C 1.38106 * 119.97917 * 0.34123 * 28 27 26 30 30 C 1.38369 * 121.80888 * 342.88812 * 25 24 23 31 31 H 1.09003 * 109.47377 * 59.99849 * 1 2 3 32 32 H 1.09004 * 109.47737 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46978 * 300.00033 * 1 2 3 34 34 H 1.09004 * 109.47367 * 299.99885 * 7 5 4 35 35 H 1.09004 * 109.47248 * 60.00273 * 7 5 4 36 36 H 1.08994 * 109.46924 * 300.00041 * 8 7 5 37 37 H 1.08996 * 109.46544 * 59.99939 * 8 7 5 38 38 H 0.97002 * 119.99396 * 179.97438 * 12 11 9 39 39 H 0.96996 * 119.99760 * 0.02562 * 19 17 2 40 40 H 1.08996 * 109.69608 * 287.94554 * 22 20 19 41 41 H 1.09003 * 109.69430 * 48.54620 * 22 20 19 42 42 H 1.09001 * 109.68751 * 54.98441 * 23 22 20 43 43 H 1.08999 * 109.68273 * 175.54518 * 23 22 20 44 44 H 1.07995 * 119.89186 * 359.76684 * 26 25 24 45 45 H 1.08001 * 120.02156 * 180.02562 * 27 26 25 46 46 H 1.07998 * 120.01243 * 180.02562 * 28 27 26 47 47 H 1.08004 * 119.84111 * 179.75515 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6845 -1.1855 5 6 2.2170 0.0640 -2.2811 6 8 1.9982 1.2518 -2.2504 7 6 2.7191 -0.5771 -3.5492 8 6 2.8630 0.4890 -4.6373 9 6 3.3657 -0.1519 -5.9051 10 1 3.5625 -1.2135 -5.9323 11 6 3.5745 0.6169 -7.0305 12 7 3.3354 1.9097 -6.9971 13 14 4.1970 -0.1777 -8.6022 14 1 4.3871 -1.6335 -8.3792 15 1 3.2066 0.0321 -9.6887 16 1 5.4926 0.4368 -8.9881 17 6 2.0323 -0.7105 1.2305 18 8 2.6529 -1.7468 1.1214 19 7 1.7919 -0.1942 2.4520 20 6 2.2807 -0.8846 3.6481 21 1 3.2400 -1.3534 3.4290 22 6 2.4554 0.1264 4.7841 23 6 2.6778 -0.6491 6.0889 24 8 1.4915 -1.3893 6.3805 25 6 0.9510 -2.1398 5.3855 26 6 0.0333 -3.1295 5.7242 27 6 -0.5413 -3.9090 4.7416 28 6 -0.2057 -3.7071 3.4153 29 6 0.7097 -2.7301 3.0762 30 6 1.2874 -1.9423 4.0580 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3635 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 3.6883 -1.0401 -3.3633 35 1 2.0102 -1.3373 -3.8774 36 1 1.8938 0.9516 -4.8231 37 1 3.5716 1.2495 -4.3093 38 1 3.4826 2.4507 -7.7887 39 1 1.2954 0.6344 2.5391 40 1 3.3185 0.7606 4.5820 41 1 1.5593 0.7409 4.8700 42 1 3.5179 -1.3335 5.9707 43 1 2.8837 0.0490 6.9003 44 1 -0.2301 -3.2877 6.7595 45 1 -1.2535 -4.6760 5.0079 46 1 -0.6553 -4.3166 2.6454 47 1 0.9732 -2.5769 2.0400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:58 Heat of formation + Delta-G solvation = -163.150353 kcal Electronic energy + Delta-G solvation = -30031.191980 eV Core-core repulsion = 25757.144624 eV Total energy + Delta-G solvation = -4274.047356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.24782 -41.68078 -40.47836 -38.44238 -37.77546 -36.69723 -35.66684 -34.05739 -33.14700 -32.16938 -31.53020 -31.09362 -28.12871 -26.86009 -25.58363 -24.70806 -24.05652 -23.28371 -21.82841 -21.43244 -21.12853 -19.25577 -18.86329 -18.77437 -18.26449 -17.64023 -17.45530 -17.38458 -17.05269 -16.51819 -16.40813 -16.20381 -15.89221 -15.31120 -15.15871 -14.98950 -14.68237 -14.46294 -14.31125 -14.27157 -14.18517 -13.84959 -13.46523 -13.43621 -13.25951 -12.99575 -12.88154 -12.76940 -12.50162 -12.45180 -12.31883 -12.05427 -11.96515 -11.80689 -11.76401 -11.69209 -11.51098 -11.28562 -10.95865 -10.59128 -10.40166 -9.84301 -9.18626 -8.21184 -6.34348 0.25616 0.41912 1.11416 1.24941 1.28705 1.43432 1.43652 1.57560 2.12982 2.34137 2.43128 2.79028 3.12704 3.32962 3.50001 3.57138 3.67673 3.71797 3.80463 3.87188 3.97590 4.11896 4.19392 4.33701 4.37096 4.41464 4.48952 4.50950 4.54893 4.56124 4.58626 4.64455 4.87311 4.88409 4.91917 4.98100 5.02419 5.17800 5.26419 5.28677 5.45955 5.47932 5.54119 5.58819 5.79559 5.80089 6.12398 6.23848 6.43584 6.70905 6.83762 6.95095 7.35601 8.91521 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023854 B = 0.001889 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.525425 B =14821.694036 C =15308.735012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.058 3.942 3 H 0.114 0.886 4 O -0.340 6.340 5 C 0.469 3.531 6 O -0.532 6.532 7 C -0.096 4.096 8 C 0.041 3.959 9 C -0.544 4.544 10 H 0.075 0.925 11 C -0.003 4.003 12 N -0.934 5.934 13 Si 0.973 3.027 14 H -0.256 1.256 15 H -0.279 1.279 16 H -0.280 1.280 17 C 0.527 3.473 18 O -0.549 6.549 19 N -0.699 5.699 20 C 0.190 3.810 21 H 0.084 0.916 22 C -0.158 4.158 23 C 0.060 3.940 24 O -0.325 6.325 25 C 0.131 3.869 26 C -0.162 4.162 27 C -0.079 4.079 28 C -0.166 4.166 29 C -0.090 4.090 30 C -0.188 4.188 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.115 0.885 36 H -0.005 1.005 37 H -0.008 1.008 38 H 0.264 0.736 39 H 0.419 0.581 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.155 0.845 46 H 0.132 0.868 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 -6.810 31.643 33.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.001 4.001 3 H 0.131 0.869 4 O -0.257 6.257 5 C 0.314 3.686 6 O -0.421 6.421 7 C -0.133 4.133 8 C 0.004 3.996 9 C -0.582 4.582 10 H 0.093 0.907 11 C -0.201 4.201 12 N -0.573 5.573 13 Si 0.797 3.203 14 H -0.180 1.180 15 H -0.205 1.205 16 H -0.206 1.206 17 C 0.312 3.688 18 O -0.427 6.427 19 N -0.353 5.353 20 C 0.086 3.914 21 H 0.102 0.898 22 C -0.196 4.196 23 C -0.015 4.015 24 O -0.239 6.239 25 C 0.085 3.915 26 C -0.181 4.181 27 C -0.097 4.097 28 C -0.184 4.184 29 C -0.108 4.108 30 C -0.190 4.190 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.013 0.987 37 H 0.010 0.990 38 H 0.073 0.927 39 H 0.257 0.743 40 H 0.132 0.868 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.162 0.838 44 H 0.164 0.836 45 H 0.173 0.827 46 H 0.150 0.850 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.823 -7.004 31.701 33.175 hybrid contribution 0.235 0.563 -1.345 1.477 sum -6.588 -6.441 30.357 31.724 Atomic orbital electron populations 1.22157 0.89785 1.04348 1.05253 1.22670 0.97670 0.97677 0.82056 0.86877 1.86672 1.77239 1.41938 1.19822 1.24527 0.72969 0.85771 0.85373 1.90609 1.49201 1.17962 1.84348 1.21544 1.03649 1.00602 0.87508 1.18791 0.95731 0.93022 0.92095 1.21660 1.44547 0.95641 0.96361 0.90726 1.26072 0.95596 0.95325 1.03122 1.70157 1.49717 1.06815 1.30654 0.85274 0.77725 0.79148 0.78122 1.17962 1.20457 1.20573 1.20204 0.78968 0.84793 0.84809 1.90745 1.40692 1.24388 1.86845 1.45730 1.57840 1.28033 1.03680 1.19745 0.95335 0.91591 0.84753 0.89787 1.22519 1.06081 0.97851 0.93148 1.23245 0.84913 0.94854 0.98459 1.85994 1.42576 1.59133 1.36217 1.18831 0.94759 0.91658 0.86211 1.20892 0.99877 0.95863 1.01438 1.21279 0.98317 0.98348 0.91724 1.21308 0.99809 0.99718 0.97579 1.21272 0.95504 0.94681 0.99359 1.20224 1.04016 1.02048 0.92718 0.91361 0.90875 0.86963 0.87130 0.86657 0.98677 0.98963 0.92703 0.74264 0.86787 0.88543 0.91212 0.83813 0.83598 0.82739 0.84964 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.50 71.98 0.68 -2.51 16 2 C 0.06 1.51 2.97 29.85 0.09 1.59 16 3 H 0.11 2.89 7.16 -2.39 -0.02 2.87 16 4 O -0.34 -11.75 9.42 -45.10 -0.42 -12.17 16 5 C 0.47 18.64 7.93 71.24 0.56 19.20 16 6 O -0.53 -23.77 15.20 21.98 0.33 -23.44 16 7 C -0.10 -3.98 5.75 29.85 0.17 -3.81 16 8 C 0.04 2.22 4.26 29.85 0.13 2.34 16 9 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 10 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 11 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 12 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 13 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 14 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 C 0.53 13.05 5.76 87.66 0.50 13.55 16 18 O -0.55 -18.14 14.43 15.71 0.23 -17.91 16 19 N -0.70 -11.46 4.82 -445.86 -2.15 -13.61 16 20 C 0.19 3.11 2.70 44.29 0.12 3.23 16 21 H 0.08 1.72 7.57 -2.39 -0.02 1.70 16 22 C -0.16 -1.35 5.67 30.76 0.17 -1.18 16 23 C 0.06 0.52 7.03 72.12 0.51 1.02 16 24 O -0.32 -4.92 10.27 -91.83 -0.94 -5.86 16 25 C 0.13 2.35 6.47 22.52 0.15 2.50 16 26 C -0.16 -2.60 9.94 22.42 0.22 -2.38 16 27 C -0.08 -1.19 10.04 22.22 0.22 -0.97 16 28 C -0.17 -3.12 10.04 22.25 0.22 -2.89 16 29 C -0.09 -2.01 9.08 22.30 0.20 -1.80 16 30 C -0.19 -3.67 5.56 -19.75 -0.11 -3.78 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.11 1.41 7.92 -2.38 -0.02 1.39 16 34 H 0.11 4.25 8.14 -2.39 -0.02 4.23 16 35 H 0.12 4.30 8.14 -2.38 -0.02 4.29 16 36 H -0.01 -0.31 8.10 -2.39 -0.02 -0.33 16 37 H -0.01 -0.49 8.10 -2.39 -0.02 -0.50 16 38 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.42 4.19 8.36 -92.71 -0.78 3.41 16 40 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.10 0.67 8.11 -2.39 -0.02 0.65 16 42 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 46 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 47 H 0.11 2.98 4.70 -2.91 -0.01 2.97 16 Total: -1.00 -79.20 392.79 4.12 -75.08 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.22 Total: 15.37 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 4.55 Total: -6.03 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -1.87 Total: -71.09 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -0.81 Total: -59.38 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -79.20 4.12 -75.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.066 kcal (2) G-P(sol) polarization free energy of solvation -79.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds