Wall clock time and date at job start Wed Apr 1 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00119 * 2 1 4 4 C 1.52995 * 109.47231 * 124.99760 * 3 2 1 5 5 C 1.53007 * 109.46870 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46822 * 55.00736 * 5 4 3 7 7 N 1.46499 * 109.47095 * 295.00259 * 5 4 3 8 8 C 1.34770 * 119.99986 * 85.00567 * 7 5 4 9 9 O 1.21589 * 119.99864 * 359.97438 * 8 7 5 10 10 C 1.47534 * 120.00135 * 179.97438 * 8 7 5 11 11 C 1.39666 * 120.19447 * 359.97438 * 10 8 7 12 12 C 1.37830 * 119.91787 * 179.97438 * 11 10 8 13 13 C 1.38575 * 120.32371 * 0.02562 * 12 11 10 14 14 C 1.38026 * 120.40395 * 359.97438 * 13 12 11 15 15 C 1.38844 * 120.06690 * 359.73498 * 14 13 12 16 16 O 1.35517 * 120.15660 * 180.27975 * 15 14 13 17 17 C 1.34815 * 117.00403 * 354.39613 * 16 15 14 18 18 H 1.07996 * 119.99928 * 5.06956 * 17 16 15 19 19 C 1.38704 * 120.00053 * 185.06570 * 17 16 15 20 20 N 1.31514 * 120.00079 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99861 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47257 * 59.99577 * 21 19 17 23 23 H 1.48496 * 109.47108 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46869 * 299.99680 * 21 19 17 25 25 C 1.50707 * 109.46579 * 175.00358 * 5 4 3 26 26 O 1.20828 * 119.99518 * 120.00582 * 25 5 4 27 27 O 1.34227 * 120.00100 * 299.72018 * 25 5 4 28 28 C 1.45195 * 116.99820 * 180.27539 * 27 25 5 29 29 C 1.53005 * 109.47043 * 180.02562 * 28 27 25 30 30 H 1.07998 * 120.00090 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99891 * 359.97438 * 1 2 3 32 32 H 1.07994 * 120.00162 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.46912 * 5.00069 * 3 2 1 34 34 H 1.09003 * 109.47012 * 245.00396 * 3 2 1 35 35 H 1.08999 * 109.46921 * 60.00314 * 4 3 2 36 36 H 1.08995 * 109.47326 * 300.00270 * 4 3 2 37 37 H 0.96998 * 119.99835 * 264.99810 * 7 5 4 38 38 H 1.07994 * 120.04420 * 359.97438 * 11 10 8 39 39 H 1.08000 * 119.84166 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.80214 * 179.97438 * 13 12 11 41 41 H 1.07999 * 119.96731 * 180.02562 * 14 13 12 42 42 H 0.97000 * 120.00398 * 180.02562 * 20 19 17 43 43 H 1.08992 * 109.47783 * 300.00708 * 28 27 25 44 44 H 1.09004 * 109.47110 * 60.01226 * 28 27 25 45 45 H 1.09000 * 109.46981 * 300.00477 * 29 28 27 46 46 H 1.09001 * 109.46846 * 59.99822 * 29 28 27 47 47 H 1.08995 * 109.47516 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6580 1.1812 6 1 3.0924 3.4866 1.1810 7 7 4.6427 2.7349 -0.0150 8 6 4.1250 3.1824 -1.1761 9 8 2.9587 3.5219 -1.2308 10 6 4.9733 3.2604 -2.3806 11 6 6.3136 2.8721 -2.3222 12 6 7.1008 2.9468 -3.4511 13 6 6.5693 3.4063 -4.6455 14 6 5.2465 3.7936 -4.7183 15 6 4.4370 3.7194 -3.5927 16 8 3.1365 4.0938 -3.6635 17 6 2.7186 4.6383 -4.8239 18 1 3.3873 4.6842 -5.6706 19 6 1.4296 5.1395 -4.9302 20 7 0.6153 5.0841 -3.8990 21 14 0.8504 5.8934 -6.5382 22 1 0.9306 4.8776 -7.6184 23 1 -0.5545 6.3517 -6.3923 24 1 1.7150 7.0508 -6.8820 25 6 4.6669 2.7378 2.4117 26 8 5.8651 2.8478 2.3007 27 8 4.1071 2.6924 3.6308 28 6 5.0021 2.7807 4.7707 29 6 4.1883 2.7117 6.0646 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 3.7399 0.5066 1.0920 36 1 2.4772 1.2356 2.1130 37 1 5.5730 2.4638 0.0286 38 1 6.7327 2.5137 -1.3936 39 1 8.1369 2.6458 -3.4046 40 1 7.1938 3.4618 -5.5248 41 1 4.8394 4.1502 -5.6529 42 1 -0.2862 5.4342 -3.9734 43 1 5.7096 1.9521 4.7423 44 1 5.5461 3.7245 4.7333 45 1 3.4805 3.5401 6.0932 46 1 3.6444 1.7677 6.1018 47 1 4.8600 2.7784 6.9204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837025704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:11 Heat of formation + Delta-G solvation = -101.712341 kcal Electronic energy + Delta-G solvation = -30838.462366 eV Core-core repulsion = 26567.079163 eV Total energy + Delta-G solvation = -4271.383204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.87190 -39.62811 -38.37101 -36.81385 -36.37998 -35.71452 -33.96321 -32.34934 -32.10518 -31.29716 -29.81140 -28.91364 -27.18876 -25.37553 -23.71862 -23.12341 -22.25217 -21.55899 -20.67488 -20.05314 -19.42262 -18.22076 -17.99950 -17.39219 -16.77609 -16.57326 -16.05456 -15.44151 -15.18444 -14.73303 -14.61573 -14.29359 -14.14591 -14.09782 -13.85053 -13.69468 -13.57651 -13.08135 -12.98787 -12.70110 -12.53494 -12.43628 -12.24149 -11.91092 -11.81085 -11.78330 -11.71341 -11.31869 -11.14557 -10.89665 -10.84191 -10.79527 -10.76102 -10.67976 -10.48485 -10.37120 -9.59108 -9.03262 -8.91530 -8.87519 -8.69753 -8.27796 -7.31552 -6.45219 -4.04694 1.69613 2.02482 2.31573 2.32640 2.57079 3.11700 3.13621 3.15838 3.61033 3.68874 3.93167 4.41445 4.60660 4.66002 4.71337 4.91339 4.99410 5.06515 5.07381 5.17690 5.32947 5.34913 5.41717 5.49287 5.49804 5.53819 5.62940 5.67545 5.70130 5.78421 5.92456 6.05740 6.12175 6.12894 6.21690 6.35023 6.56522 6.63862 6.67354 6.75027 6.90719 6.94621 7.06796 7.08370 7.23133 7.28940 7.56331 7.69262 7.90180 8.03397 8.93954 8.99326 9.66034 10.68261 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.003290 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.838877 B = 8509.214172 C = 9852.121950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.090 4.090 4 C -0.116 4.116 5 C 0.160 3.840 6 H 0.127 0.873 7 N -0.731 5.731 8 C 0.560 3.440 9 O -0.492 6.492 10 C -0.228 4.228 11 C -0.036 4.036 12 C -0.230 4.230 13 C -0.049 4.049 14 C -0.238 4.238 15 C 0.191 3.809 16 O -0.122 6.122 17 C -0.404 4.404 18 H 0.093 0.907 19 C 0.046 3.954 20 N -0.831 5.831 21 Si 0.939 3.061 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C 0.464 3.536 26 O -0.505 6.505 27 O -0.352 6.352 28 C 0.061 3.939 29 C -0.153 4.153 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.402 0.598 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.272 0.728 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.662 -7.103 13.010 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.166 4.166 3 C -0.127 4.127 4 C -0.154 4.154 5 C 0.053 3.947 6 H 0.145 0.855 7 N -0.390 5.390 8 C 0.351 3.649 9 O -0.365 6.365 10 C -0.232 4.232 11 C -0.055 4.055 12 C -0.249 4.249 13 C -0.068 4.068 14 C -0.257 4.257 15 C 0.131 3.869 16 O -0.020 6.020 17 C -0.479 4.479 18 H 0.110 0.890 19 C -0.162 4.162 20 N -0.462 5.462 21 Si 0.763 3.237 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C 0.307 3.693 26 O -0.392 6.392 27 O -0.268 6.268 28 C -0.013 4.013 29 C -0.210 4.210 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.239 0.761 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.655 -6.725 13.205 15.861 hybrid contribution 0.573 0.223 -0.782 0.995 sum 6.228 -6.502 12.423 15.343 Atomic orbital electron populations 1.23824 0.96055 1.01579 1.02046 1.22981 0.96072 0.98376 0.99194 1.20860 0.98137 0.95244 0.98482 1.21918 0.98235 0.94816 1.00476 1.20338 0.91538 1.02130 0.80665 0.85542 1.45786 1.14744 1.70366 1.08072 1.18171 0.87613 0.77012 0.82134 1.90964 1.15822 1.45781 1.83962 1.18715 0.94470 1.17952 0.92105 1.20812 0.91852 0.95271 0.97563 1.20471 0.99540 1.11238 0.93671 1.20910 0.94403 0.94582 0.96908 1.21158 0.94745 1.10436 0.99408 1.19238 0.85208 0.90800 0.91645 1.84157 1.17979 1.63666 1.36217 1.21434 0.98523 1.39081 0.88903 0.88980 1.25351 0.95086 0.96637 0.99097 1.70102 1.06668 1.40138 1.29334 0.85820 0.78288 0.79418 0.80146 1.19388 1.20170 1.19403 1.23872 0.88159 0.72126 0.85185 1.90650 1.16431 1.45030 1.87096 1.86512 1.41991 1.83461 1.14842 1.23058 0.92273 1.02587 0.83396 1.21810 1.01044 1.03701 0.94417 0.89082 0.88358 0.88083 0.90118 0.89615 0.91420 0.90055 0.76120 0.86924 0.87246 0.87179 0.85060 0.91840 0.91170 0.91131 0.91315 0.91365 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.73 14.32 29.02 0.42 -2.32 16 2 C -0.15 -2.12 9.52 -36.02 -0.34 -2.46 16 3 C -0.09 -1.46 4.26 -27.88 -0.12 -1.58 16 4 C -0.12 -1.52 4.84 -26.73 -0.13 -1.65 16 5 C 0.16 2.35 2.77 -69.08 -0.19 2.15 16 6 H 0.13 2.01 7.58 -51.93 -0.39 1.61 16 7 N -0.73 -12.02 4.85 -55.97 -0.27 -12.29 16 8 C 0.56 11.74 6.33 -12.47 -0.08 11.66 16 9 O -0.49 -12.25 12.30 -16.57 -0.20 -12.45 16 10 C -0.23 -4.86 5.89 -104.81 -0.62 -5.48 16 11 C -0.04 -0.63 9.53 -39.20 -0.37 -1.01 16 12 C -0.23 -3.83 10.03 -39.61 -0.40 -4.22 16 13 C -0.05 -0.87 10.03 -39.53 -0.40 -1.27 16 14 C -0.24 -5.06 9.16 -39.44 -0.36 -5.42 16 15 C 0.19 4.64 6.66 -38.60 -0.26 4.38 16 16 O -0.12 -3.50 7.84 -21.05 -0.16 -3.66 16 17 C -0.40 -11.20 9.49 30.90 0.29 -10.90 16 18 H 0.09 2.33 5.21 -52.49 -0.27 2.05 16 19 C 0.05 1.27 5.49 -17.52 -0.10 1.17 16 20 N -0.83 -24.43 13.67 55.48 0.76 -23.67 16 21 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 C 0.46 6.33 7.32 36.01 0.26 6.59 16 26 O -0.50 -7.73 15.59 -18.75 -0.29 -8.02 16 27 O -0.35 -4.16 10.04 -39.25 -0.39 -4.55 16 28 C 0.06 0.55 6.19 37.16 0.23 0.78 16 29 C -0.15 -0.99 10.29 37.16 0.38 -0.61 16 30 H 0.09 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.10 1.42 7.84 -52.48 -0.41 1.01 16 32 H 0.10 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.08 1.46 7.50 -51.93 -0.39 1.07 16 34 H 0.09 1.67 5.64 -51.93 -0.29 1.38 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 37 H 0.40 5.99 5.82 -40.82 -0.24 5.75 16 38 H 0.11 1.62 6.40 -52.49 -0.34 1.28 16 39 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 44 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 396.27 15.07 5.97 5.97 Total: -1.00 -33.04 396.27 -7.80 -40.84 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -6.41 Total: 12.76 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.78 Total: -10.18 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.49 Total: -35.96 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -1.05 Total: -28.68 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.04 -7.80 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837025704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.872 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds