Wall clock time and date at job start Wed Apr 1 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00119 * 2 1 4 4 C 1.52995 * 109.47231 * 124.99760 * 3 2 1 5 5 C 1.53007 * 109.46870 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46822 * 55.00736 * 5 4 3 7 7 N 1.46499 * 109.47095 * 295.00259 * 5 4 3 8 8 C 1.34770 * 119.99986 * 85.00567 * 7 5 4 9 9 O 1.21589 * 119.99864 * 359.97438 * 8 7 5 10 10 C 1.47534 * 120.00135 * 179.97438 * 8 7 5 11 11 C 1.39666 * 120.19447 * 359.97438 * 10 8 7 12 12 C 1.37830 * 119.91787 * 179.97438 * 11 10 8 13 13 C 1.38575 * 120.32371 * 0.02562 * 12 11 10 14 14 C 1.38026 * 120.40395 * 359.97438 * 13 12 11 15 15 C 1.38844 * 120.06690 * 359.73498 * 14 13 12 16 16 O 1.35517 * 120.15660 * 180.27975 * 15 14 13 17 17 C 1.34815 * 117.00403 * 354.39613 * 16 15 14 18 18 H 1.07996 * 119.99928 * 5.06956 * 17 16 15 19 19 C 1.38704 * 120.00053 * 185.06570 * 17 16 15 20 20 N 1.31514 * 120.00079 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99861 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47257 * 59.99577 * 21 19 17 23 23 H 1.48496 * 109.47108 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46869 * 299.99680 * 21 19 17 25 25 C 1.50707 * 109.46579 * 175.00358 * 5 4 3 26 26 O 1.20828 * 119.99518 * 120.00582 * 25 5 4 27 27 O 1.34227 * 120.00100 * 299.72018 * 25 5 4 28 28 C 1.45195 * 116.99820 * 180.27539 * 27 25 5 29 29 C 1.53005 * 109.47043 * 180.02562 * 28 27 25 30 30 H 1.07998 * 120.00090 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99891 * 359.97438 * 1 2 3 32 32 H 1.07994 * 120.00162 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.46912 * 5.00069 * 3 2 1 34 34 H 1.09003 * 109.47012 * 245.00396 * 3 2 1 35 35 H 1.08999 * 109.46921 * 60.00314 * 4 3 2 36 36 H 1.08995 * 109.47326 * 300.00270 * 4 3 2 37 37 H 0.96998 * 119.99835 * 264.99810 * 7 5 4 38 38 H 1.07994 * 120.04420 * 359.97438 * 11 10 8 39 39 H 1.08000 * 119.84166 * 180.02562 * 12 11 10 40 40 H 1.08000 * 119.80214 * 179.97438 * 13 12 11 41 41 H 1.07999 * 119.96731 * 180.02562 * 14 13 12 42 42 H 0.97000 * 120.00398 * 180.02562 * 20 19 17 43 43 H 1.08992 * 109.47783 * 300.00708 * 28 27 25 44 44 H 1.09004 * 109.47110 * 60.01226 * 28 27 25 45 45 H 1.09000 * 109.46981 * 300.00477 * 29 28 27 46 46 H 1.09001 * 109.46846 * 59.99822 * 29 28 27 47 47 H 1.08995 * 109.47516 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6580 1.1812 6 1 3.0924 3.4866 1.1810 7 7 4.6427 2.7349 -0.0150 8 6 4.1250 3.1824 -1.1761 9 8 2.9587 3.5219 -1.2308 10 6 4.9733 3.2604 -2.3806 11 6 6.3136 2.8721 -2.3222 12 6 7.1008 2.9468 -3.4511 13 6 6.5693 3.4063 -4.6455 14 6 5.2465 3.7936 -4.7183 15 6 4.4370 3.7194 -3.5927 16 8 3.1365 4.0938 -3.6635 17 6 2.7186 4.6383 -4.8239 18 1 3.3873 4.6842 -5.6706 19 6 1.4296 5.1395 -4.9302 20 7 0.6153 5.0841 -3.8990 21 14 0.8504 5.8934 -6.5382 22 1 0.9306 4.8776 -7.6184 23 1 -0.5545 6.3517 -6.3923 24 1 1.7150 7.0508 -6.8820 25 6 4.6669 2.7378 2.4117 26 8 5.8651 2.8478 2.3007 27 8 4.1071 2.6924 3.6308 28 6 5.0021 2.7807 4.7707 29 6 4.1883 2.7117 6.0646 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 3.7399 0.5066 1.0920 36 1 2.4772 1.2356 2.1130 37 1 5.5730 2.4638 0.0286 38 1 6.7327 2.5137 -1.3936 39 1 8.1369 2.6458 -3.4046 40 1 7.1938 3.4618 -5.5248 41 1 4.8394 4.1502 -5.6529 42 1 -0.2862 5.4342 -3.9734 43 1 5.7096 1.9521 4.7423 44 1 5.5461 3.7245 4.7333 45 1 3.4805 3.5401 6.0932 46 1 3.6444 1.7677 6.1018 47 1 4.8600 2.7784 6.9204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837025704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:09 Heat of formation + Delta-G solvation = -121.535113 kcal Electronic energy + Delta-G solvation = -30839.321946 eV Core-core repulsion = 26567.079163 eV Total energy + Delta-G solvation = -4272.242784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.05585 -41.18034 -39.96361 -38.07340 -37.89091 -37.05182 -35.33552 -34.30012 -33.12143 -32.42732 -31.20799 -30.55593 -28.44110 -27.31594 -24.87884 -24.33500 -23.40607 -23.05436 -21.95810 -21.49658 -20.66366 -19.83499 -19.61869 -18.61011 -18.08801 -17.81513 -17.47189 -16.71529 -16.66578 -16.28603 -15.96473 -15.85713 -15.62850 -15.49464 -15.31922 -14.96796 -14.87403 -14.46730 -14.23775 -14.09817 -13.79058 -13.61601 -13.53380 -13.19869 -13.06044 -12.97215 -12.88035 -12.69118 -12.52495 -12.49990 -12.35628 -12.14708 -12.01769 -11.94148 -11.56818 -11.54484 -11.40339 -10.80186 -10.63250 -10.21019 -10.18754 -9.81771 -9.03223 -8.42225 -6.12333 0.11489 0.73059 0.90688 1.23400 1.33654 1.42337 1.45814 1.50463 2.07683 2.16920 2.27231 2.89030 3.22913 3.37892 3.46439 3.72296 3.85583 3.96098 4.01559 4.06254 4.07775 4.17675 4.24614 4.30038 4.35015 4.46343 4.49193 4.53776 4.63842 4.76739 4.81286 4.93268 4.93625 4.98439 5.07516 5.08252 5.10802 5.13919 5.32960 5.34729 5.36857 5.48314 5.60560 5.69830 5.72262 5.94005 5.97445 6.16074 6.47290 6.58132 6.97122 7.40553 7.81093 8.77141 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.003290 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.838877 B = 8509.214172 C = 9852.121950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.084 4.084 4 C -0.103 4.103 5 C 0.156 3.844 6 H 0.107 0.893 7 N -0.712 5.712 8 C 0.559 3.441 9 O -0.541 6.541 10 C -0.243 4.243 11 C -0.032 4.032 12 C -0.202 4.202 13 C -0.039 4.039 14 C -0.257 4.257 15 C 0.154 3.846 16 O -0.182 6.182 17 C -0.428 4.428 18 H 0.105 0.895 19 C -0.018 4.018 20 N -0.899 5.899 21 Si 1.017 2.983 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.256 1.256 25 C 0.477 3.523 26 O -0.520 6.520 27 O -0.352 6.352 28 C 0.052 3.948 29 C -0.148 4.148 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.412 0.588 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.125 0.875 42 H 0.270 0.730 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.287 -8.918 13.707 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.174 4.174 3 C -0.122 4.122 4 C -0.141 4.141 5 C 0.049 3.951 6 H 0.125 0.875 7 N -0.370 5.370 8 C 0.349 3.651 9 O -0.418 6.418 10 C -0.248 4.248 11 C -0.051 4.051 12 C -0.221 4.221 13 C -0.057 4.057 14 C -0.277 4.277 15 C 0.099 3.901 16 O -0.084 6.084 17 C -0.504 4.504 18 H 0.122 0.878 19 C -0.218 4.218 20 N -0.534 5.534 21 Si 0.836 3.164 22 H -0.179 1.179 23 H -0.198 1.198 24 H -0.181 1.181 25 C 0.320 3.680 26 O -0.409 6.409 27 O -0.267 6.267 28 C -0.021 4.021 29 C -0.205 4.205 30 H 0.137 0.863 31 H 0.099 0.901 32 H 0.145 0.855 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.251 0.749 38 H 0.169 0.831 39 H 0.178 0.822 40 H 0.171 0.829 41 H 0.143 0.857 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.376 -8.577 13.941 18.863 hybrid contribution -0.149 0.640 -0.805 1.039 sum 9.227 -7.937 13.136 17.908 Atomic orbital electron populations 1.23988 0.96117 1.02131 1.01183 1.23057 0.96296 0.98149 0.99902 1.20674 0.97945 0.95454 0.98092 1.21842 0.97886 0.94414 0.99981 1.20384 0.91428 1.02481 0.80782 0.87528 1.45505 1.15229 1.68791 1.07469 1.18289 0.86963 0.76571 0.83254 1.90961 1.17979 1.48030 1.84809 1.19169 0.96355 1.17792 0.91489 1.21271 0.89932 0.93995 0.99897 1.21137 1.01457 1.07258 0.92209 1.21420 0.92900 0.92222 0.99140 1.21313 0.96399 1.11620 0.98332 1.19985 0.84954 0.91307 0.93878 1.84163 1.20333 1.67006 1.36897 1.21949 0.99301 1.39588 0.89513 0.87791 1.26649 0.94933 0.97008 1.03162 1.70292 1.07190 1.43565 1.32389 0.84688 0.77711 0.78833 0.75179 1.17906 1.19837 1.18052 1.23359 0.87409 0.71821 0.85413 1.90638 1.16836 1.46000 1.87410 1.86507 1.42655 1.82841 1.14733 1.23418 0.92655 1.02921 0.83142 1.21845 1.01214 1.03787 0.93606 0.86282 0.90094 0.85462 0.93513 0.93348 0.89384 0.87811 0.74857 0.83148 0.82191 0.82872 0.85740 0.92091 0.90302 0.91277 0.91651 0.90955 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.53 14.32 67.78 0.97 -4.56 16 2 C -0.16 -4.49 9.52 25.65 0.24 -4.25 16 3 C -0.08 -2.91 4.26 29.85 0.13 -2.78 16 4 C -0.10 -2.69 4.84 30.59 0.15 -2.54 16 5 C 0.16 4.64 2.77 44.25 0.12 4.76 16 6 H 0.11 3.66 7.58 -2.39 -0.02 3.64 16 7 N -0.71 -23.58 4.85 -449.26 -2.18 -25.76 16 8 C 0.56 24.63 6.33 86.70 0.55 25.18 16 9 O -0.54 -29.53 12.30 16.90 0.21 -29.32 16 10 C -0.24 -10.57 5.89 -19.99 -0.12 -10.69 16 11 C -0.03 -1.04 9.53 22.52 0.21 -0.82 16 12 C -0.20 -5.68 10.03 22.25 0.22 -5.45 16 13 C -0.04 -1.22 10.03 22.30 0.22 -1.00 16 14 C -0.26 -10.97 9.16 22.36 0.20 -10.77 16 15 C 0.15 7.85 6.66 22.91 0.15 8.01 16 16 O -0.18 -11.29 7.84 0.86 0.01 -11.28 16 17 C -0.43 -25.47 9.49 67.93 0.64 -24.82 16 18 H 0.10 5.58 5.21 -2.91 -0.02 5.56 16 19 C -0.02 -1.03 5.49 84.85 0.47 -0.56 16 20 N -0.90 -57.55 13.67 21.62 0.30 -57.26 16 21 Si 1.02 43.82 29.55 68.60 2.03 45.85 16 22 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 25 C 0.48 12.50 7.32 71.24 0.52 13.02 16 26 O -0.52 -15.00 15.59 21.96 0.34 -14.65 16 27 O -0.35 -7.81 10.04 -51.39 -0.52 -8.32 16 28 C 0.05 0.84 6.19 71.98 0.45 1.29 16 29 C -0.15 -1.57 10.29 71.98 0.74 -0.83 16 30 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.08 2.52 7.84 -2.91 -0.02 2.50 16 32 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.05 1.89 7.50 -2.39 -0.02 1.87 16 34 H 0.05 2.04 5.64 -2.39 -0.01 2.03 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.10 2.28 8.00 -2.39 -0.02 2.26 16 37 H 0.41 11.62 5.82 -92.71 -0.54 11.08 16 38 H 0.15 3.64 6.40 -2.91 -0.02 3.62 16 39 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 40 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 41 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 42 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 43 H 0.08 1.17 8.13 -2.39 -0.02 1.15 16 44 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 45 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.10 0.63 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -82.42 396.27 6.52 -75.90 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: 0.46 Total: 41.67 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 5.88 Total: -16.82 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.89 Total: -83.02 kcal Atomic # 8 Polarization: -63.63 SS G_CDS: 0.04 Total: -63.58 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -82.42 6.52 -75.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837025704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.633 kcal (2) G-P(sol) polarization free energy of solvation -82.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds