Wall clock time and date at job start Wed Apr 1 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50702 * 119.99903 * 2 1 4 4 C 1.53004 * 109.46740 * 125.00310 * 3 2 1 5 5 C 1.53003 * 109.47085 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47206 * 305.00154 * 5 4 3 7 7 N 1.46508 * 109.47083 * 64.99951 * 5 4 3 8 8 C 1.34776 * 119.99737 * 275.00114 * 7 5 4 9 9 O 1.21592 * 120.00110 * 359.97438 * 8 7 5 10 10 C 1.47541 * 119.99659 * 179.97438 * 8 7 5 11 11 C 1.39668 * 120.19607 * 0.02562 * 10 8 7 12 12 C 1.37824 * 119.91646 * 179.97438 * 11 10 8 13 13 C 1.38576 * 120.32684 * 0.02562 * 12 11 10 14 14 C 1.38029 * 120.40019 * 0.02562 * 13 12 11 15 15 C 1.38841 * 120.07170 * 359.68206 * 14 13 12 16 16 O 1.35515 * 120.16519 * 180.29778 * 15 14 13 17 17 C 1.34814 * 116.99881 * 354.38969 * 16 15 14 18 18 H 1.08006 * 120.00131 * 5.05750 * 17 16 15 19 19 C 1.38699 * 120.00193 * 185.05480 * 17 16 15 20 20 N 1.31520 * 120.00171 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99755 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47068 * 90.00024 * 21 19 17 23 23 H 1.48499 * 109.46734 * 209.99832 * 21 19 17 24 24 H 1.48494 * 109.47018 * 329.99843 * 21 19 17 25 25 C 1.50698 * 109.46972 * 184.99783 * 5 4 3 26 26 O 1.20833 * 120.00148 * 239.99719 * 25 5 4 27 27 O 1.34224 * 120.00156 * 60.00659 * 25 5 4 28 28 C 1.45198 * 117.00276 * 179.97438 * 27 25 5 29 29 C 1.52996 * 109.47283 * 179.97438 * 28 27 25 30 30 H 1.08002 * 120.00569 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00367 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00107 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47016 * 5.00586 * 3 2 1 34 34 H 1.08997 * 109.47454 * 244.99651 * 3 2 1 35 35 H 1.08999 * 109.47141 * 60.00352 * 4 3 2 36 36 H 1.09006 * 109.47155 * 299.99751 * 4 3 2 37 37 H 0.96996 * 119.99917 * 94.99769 * 7 5 4 38 38 H 1.08002 * 120.03909 * 0.02562 * 11 10 8 39 39 H 1.08001 * 119.83623 * 179.97438 * 12 11 10 40 40 H 1.07992 * 119.80170 * 180.02562 * 13 12 11 41 41 H 1.07995 * 119.96332 * 179.97438 * 14 13 12 42 42 H 0.96993 * 120.00192 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.46855 * 299.99646 * 28 27 25 44 44 H 1.09003 * 109.47187 * 59.99579 * 28 27 25 45 45 H 1.09002 * 109.47510 * 180.02562 * 29 28 27 46 46 H 1.09004 * 109.47033 * 299.99717 * 29 28 27 47 47 H 1.08993 * 109.47368 * 59.99752 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7996 2.6583 1.1821 6 1 4.2855 2.7977 0.2164 7 7 2.8653 3.7610 1.4224 8 6 2.1838 4.3030 0.3936 9 8 2.3447 3.8772 -0.7339 10 6 1.2426 5.4131 0.6357 11 6 1.0551 5.9057 1.9291 12 6 0.1748 6.9433 2.1486 13 6 -0.5269 7.5010 1.0917 14 6 -0.3526 7.0238 -0.1917 15 6 0.5345 5.9833 -0.4325 16 8 0.7116 5.5174 -1.6927 17 6 -0.0876 6.0267 -2.6515 18 1 -0.7707 6.8292 -2.4151 19 6 -0.0327 5.5201 -3.9415 20 7 -0.8121 6.0173 -4.8770 21 14 1.1483 4.1317 -4.3502 22 1 0.4729 2.8273 -4.1328 23 1 1.5683 4.2411 -5.7703 24 1 2.3425 4.2232 -3.4723 25 6 4.8416 2.6366 2.2705 26 8 4.8075 3.4580 3.1560 27 8 5.8078 1.7050 2.2562 28 6 6.7780 1.7448 3.3357 29 6 7.7926 0.6145 3.1515 30 1 -0.5401 0.9353 0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0897 34 1 2.6212 1.4027 -0.9313 35 1 3.7399 0.5065 1.0920 36 1 2.4772 1.2355 2.1131 37 1 2.7372 4.1009 2.3217 38 1 1.5998 5.4747 2.7561 39 1 0.0304 7.3229 3.1493 40 1 -1.2142 8.3139 1.2733 41 1 -0.9033 7.4635 -1.0100 42 1 -0.7739 5.6629 -5.7790 43 1 7.2958 2.7039 3.3236 44 1 6.2654 1.6205 4.2896 45 1 8.5207 0.6441 3.9621 46 1 7.2745 -0.3444 3.1638 47 1 8.3052 0.7383 2.1976 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837025708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:15 Heat of formation + Delta-G solvation = -102.458530 kcal Electronic energy + Delta-G solvation = -31088.708067 eV Core-core repulsion = 26817.292506 eV Total energy + Delta-G solvation = -4271.415561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.99898 -39.82707 -38.57347 -36.93639 -36.57943 -35.86997 -34.12546 -32.46900 -32.21648 -31.43797 -29.95924 -29.20931 -27.31667 -25.31424 -23.82934 -23.29130 -22.38164 -21.53140 -20.77245 -20.22089 -19.59349 -18.39718 -17.92648 -17.54108 -16.88981 -16.77576 -16.23974 -15.70109 -15.20471 -14.92489 -14.68996 -14.38912 -14.33242 -14.14755 -13.86978 -13.71173 -13.50380 -13.26451 -13.12956 -12.91272 -12.70301 -12.37496 -12.35765 -12.18390 -12.15590 -11.98087 -11.76364 -11.42682 -11.29705 -10.95896 -10.86332 -10.83671 -10.74557 -10.70846 -10.48863 -10.06961 -9.65851 -9.22227 -9.09876 -8.92001 -8.88489 -8.40321 -7.49758 -6.48512 -4.13656 1.53840 1.90949 2.18185 2.20284 2.45449 3.30280 3.36798 3.43482 3.50061 3.63859 4.29797 4.33362 4.47712 4.58078 4.63108 4.71485 4.77335 4.91666 4.96436 5.07749 5.10202 5.26564 5.29742 5.38431 5.41743 5.43308 5.47707 5.56756 5.61898 5.66420 5.77593 5.92414 6.02174 6.04136 6.11527 6.18800 6.36533 6.47783 6.50733 6.58564 6.80477 6.82541 6.96905 6.99434 7.13785 7.44798 7.46688 7.65268 7.83767 7.93386 8.73470 8.86912 9.49212 10.56613 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009740 B = 0.003711 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.069972 B = 7544.095426 C = 8836.805764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.092 4.092 4 C -0.116 4.116 5 C 0.159 3.841 6 H 0.127 0.873 7 N -0.728 5.728 8 C 0.567 3.433 9 O -0.510 6.510 10 C -0.227 4.227 11 C -0.038 4.038 12 C -0.220 4.220 13 C -0.049 4.049 14 C -0.227 4.227 15 C 0.203 3.797 16 O -0.164 6.164 17 C -0.396 4.396 18 H 0.108 0.892 19 C 0.072 3.928 20 N -0.869 5.869 21 Si 0.900 3.100 22 H -0.273 1.273 23 H -0.288 1.288 24 H -0.238 1.238 25 C 0.464 3.536 26 O -0.503 6.503 27 O -0.352 6.352 28 C 0.061 3.939 29 C -0.153 4.153 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.404 0.596 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.139 0.861 42 H 0.282 0.718 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.521 -9.805 16.071 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.129 4.129 4 C -0.155 4.155 5 C 0.052 3.948 6 H 0.145 0.855 7 N -0.386 5.386 8 C 0.358 3.642 9 O -0.385 6.385 10 C -0.232 4.232 11 C -0.057 4.057 12 C -0.239 4.239 13 C -0.068 4.068 14 C -0.246 4.246 15 C 0.145 3.855 16 O -0.064 6.064 17 C -0.471 4.471 18 H 0.125 0.875 19 C -0.134 4.134 20 N -0.505 5.505 21 Si 0.724 3.276 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.160 1.160 25 C 0.306 3.694 26 O -0.391 6.391 27 O -0.268 6.268 28 C -0.013 4.013 29 C -0.210 4.210 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.241 0.759 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.156 0.844 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.761 -10.055 15.141 21.122 hybrid contribution 0.260 -0.118 0.341 0.445 sum 11.021 -10.172 15.482 21.555 Atomic orbital electron populations 1.23888 0.96140 1.01784 1.01268 1.22967 0.96072 0.98281 0.99859 1.20883 0.98514 0.95608 0.97944 1.21920 0.98707 0.94612 1.00251 1.20362 0.88112 0.89712 0.96608 0.85533 1.45759 1.44206 1.36571 1.12078 1.18135 0.80019 0.82032 0.83964 1.90873 1.64497 1.61418 1.21728 1.18722 1.07848 1.03813 0.92809 1.20814 0.95852 0.94971 0.94084 1.20550 1.03197 1.01623 0.98563 1.20980 0.96358 0.97113 0.92313 1.21287 1.04279 1.01011 0.98059 1.18983 0.91156 0.90731 0.84605 1.83765 1.52538 1.57525 1.12594 1.20918 1.18618 1.19390 0.88156 0.87475 1.24496 0.96810 0.98049 0.94013 1.69636 1.36701 1.41282 1.02887 0.86205 0.83036 0.81043 0.77292 1.19810 1.21364 1.16035 1.23806 0.81288 0.78109 0.86170 1.90660 1.73612 1.38052 1.36736 1.86502 1.37884 1.52279 1.50156 1.23072 0.89038 1.00590 0.88591 1.21811 0.97891 0.97950 1.03330 0.88357 0.88876 0.87838 0.90050 0.89935 0.89913 0.91212 0.75857 0.86723 0.86961 0.86809 0.84392 0.90821 0.91086 0.91105 0.90193 0.91362 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 14.32 29.02 0.42 -2.21 16 2 C -0.15 -2.03 9.52 -36.02 -0.34 -2.37 16 3 C -0.09 -1.37 4.26 -27.88 -0.12 -1.49 16 4 C -0.12 -1.39 4.83 -26.73 -0.13 -1.52 16 5 C 0.16 2.11 2.77 -69.08 -0.19 1.92 16 6 H 0.13 1.78 7.58 -51.93 -0.39 1.39 16 7 N -0.73 -10.95 4.85 -55.97 -0.27 -11.22 16 8 C 0.57 10.89 6.33 -12.47 -0.08 10.81 16 9 O -0.51 -11.47 12.30 -16.57 -0.20 -11.67 16 10 C -0.23 -4.51 5.89 -104.81 -0.62 -5.13 16 11 C -0.04 -0.62 9.54 -39.20 -0.37 -1.00 16 12 C -0.22 -3.45 10.02 -39.61 -0.40 -3.84 16 13 C -0.05 -0.83 10.03 -39.53 -0.40 -1.23 16 14 C -0.23 -4.72 9.16 -39.43 -0.36 -5.09 16 15 C 0.20 4.67 6.66 -38.59 -0.26 4.42 16 16 O -0.16 -4.37 6.67 -21.04 -0.14 -4.51 16 17 C -0.40 -11.09 9.95 30.90 0.31 -10.78 16 18 H 0.11 3.01 5.44 -52.48 -0.29 2.72 16 19 C 0.07 2.03 5.49 -17.51 -0.10 1.94 16 20 N -0.87 -25.02 13.96 55.48 0.77 -24.24 16 21 Si 0.90 22.66 28.62 -169.99 -4.86 17.80 16 22 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.24 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.46 5.80 7.32 36.00 0.26 6.06 16 26 O -0.50 -7.19 15.59 -18.76 -0.29 -7.48 16 27 O -0.35 -3.78 10.03 -39.24 -0.39 -4.18 16 28 C 0.06 0.50 6.19 37.16 0.23 0.73 16 29 C -0.15 -0.88 10.29 37.16 0.38 -0.49 16 30 H 0.10 1.47 7.84 -52.49 -0.41 1.06 16 31 H 0.09 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.10 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.08 1.45 5.29 -51.93 -0.27 1.17 16 34 H 0.08 1.34 7.85 -51.93 -0.41 0.94 16 35 H 0.08 0.83 8.00 -51.93 -0.42 0.42 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 5.50 5.82 -40.82 -0.24 5.26 16 38 H 0.11 1.50 6.40 -52.49 -0.34 1.17 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 41 H 0.14 2.98 5.64 -52.49 -0.30 2.68 16 42 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 44 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -31.99 395.14 -7.62 -39.61 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.42 Total: 9.21 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.76 Total: -9.27 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.50 Total: -35.46 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -1.03 Total: -27.84 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.86 Total: 17.80 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.99 -7.62 -39.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837025708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.852 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds