Wall clock time and date at job start Wed Apr 1 2020 04:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47173 * 2 1 4 4 O 1.45202 * 109.47460 * 119.99736 * 2 1 3 5 5 C 1.34228 * 117.00186 * 270.00497 * 4 2 1 6 6 O 1.20830 * 119.99885 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99930 * 179.97438 * 5 4 2 8 8 H 1.09003 * 109.71278 * 54.45932 * 7 5 4 9 9 C 1.53403 * 109.68701 * 293.91079 * 7 5 4 10 10 C 1.53060 * 108.31812 * 175.58703 * 9 7 5 11 11 C 1.50771 * 109.68844 * 48.16400 * 10 9 7 12 12 C 1.38516 * 118.76299 * 162.41721 * 11 10 9 13 13 C 1.38102 * 120.31116 * 179.50813 * 12 11 10 14 14 C 1.38287 * 119.98785 * 0.03929 * 13 12 11 15 15 C 1.37970 * 119.95675 * 0.08796 * 14 13 12 16 16 C 1.38362 * 121.40542 * 342.13753 * 11 10 9 17 17 O 1.35842 * 121.80759 * 0.65078 * 16 11 10 18 18 C 1.50701 * 109.47248 * 240.00033 * 2 1 3 19 19 O 1.21286 * 119.99478 * 248.56710 * 18 2 1 20 20 N 1.34767 * 120.00172 * 68.56843 * 18 2 1 21 21 C 1.46504 * 120.00102 * 4.58105 * 20 18 2 22 22 C 1.46504 * 120.00264 * 184.58499 * 20 18 2 23 23 C 1.50703 * 109.47044 * 89.99683 * 22 20 18 24 24 H 1.07998 * 119.99824 * 359.97438 * 23 22 20 25 25 C 1.37877 * 120.00015 * 180.02562 * 23 22 20 26 26 N 1.31508 * 120.00059 * 179.97438 * 25 23 22 27 27 Si 1.86811 * 119.99844 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47037 * 89.99843 * 27 25 23 29 29 H 1.48498 * 109.46895 * 209.99618 * 27 25 23 30 30 H 1.48499 * 109.46885 * 329.99952 * 27 25 23 31 31 H 1.09001 * 109.46971 * 307.15234 * 1 2 3 32 32 H 1.09000 * 109.46994 * 67.15236 * 1 2 3 33 33 H 1.08997 * 109.47158 * 187.15449 * 1 2 3 34 34 H 1.09000 * 109.69561 * 295.29113 * 9 7 5 35 35 H 1.09003 * 109.69493 * 55.87653 * 9 7 5 36 36 H 1.09002 * 109.43538 * 288.09937 * 10 9 7 37 37 H 1.09002 * 109.43494 * 168.22933 * 10 9 7 38 38 H 1.07998 * 119.84255 * 359.53151 * 12 11 10 39 39 H 1.08003 * 120.00553 * 180.02562 * 13 12 11 40 40 H 1.08000 * 120.02198 * 179.81429 * 14 13 12 41 41 H 1.08001 * 119.89336 * 179.97438 * 15 14 13 42 42 H 1.09008 * 109.46627 * 86.12084 * 21 20 18 43 43 H 1.09000 * 109.47194 * 206.12082 * 21 20 18 44 44 H 1.08996 * 109.46909 * 326.12741 * 21 20 18 45 45 H 1.09004 * 109.47236 * 209.99943 * 22 20 18 46 46 H 1.08995 * 109.47017 * 329.99948 * 22 20 18 47 47 H 0.97004 * 120.00098 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6844 1.1856 5 6 2.2171 0.0641 2.2811 6 8 1.9981 1.2519 2.2503 7 6 2.7183 -0.5771 3.5495 8 1 3.6382 -1.1252 3.3457 9 6 1.6553 -1.5375 4.0980 10 6 2.2373 -2.2522 5.3200 11 6 2.8701 -1.2435 6.2448 12 6 3.1238 -1.6091 7.5565 13 6 3.7117 -0.7138 8.4284 14 6 4.0490 0.5547 7.9931 15 6 3.7963 0.9253 6.6884 16 6 3.2032 0.0262 5.8075 17 8 2.9657 0.4295 4.5322 18 6 2.0323 -0.7104 -1.2305 19 8 2.5963 -1.7790 -1.1258 20 7 1.8549 -0.1583 -2.4470 21 6 1.2645 1.1772 -2.5663 22 6 2.2524 -0.8935 -3.6502 23 6 1.0934 -1.7249 -4.1367 24 1 0.1548 -1.7077 -3.6027 25 6 1.2317 -2.5084 -5.2628 26 7 0.2204 -3.2342 -5.6870 27 14 2.8559 -2.5398 -6.1851 28 1 3.7176 -3.6161 -5.6335 29 1 2.6024 -2.7980 -7.6253 30 1 3.5388 -1.2304 -6.0295 31 1 -0.3633 0.6207 0.8191 32 1 -0.3633 0.3990 -0.9470 33 1 -0.3633 -1.0196 0.1280 34 1 0.7678 -0.9756 4.3893 35 1 1.3927 -2.2698 3.3345 36 1 2.9911 -2.9697 4.9956 37 1 1.4405 -2.7774 5.8467 38 1 2.8610 -2.5991 7.8990 39 1 3.9076 -1.0043 9.4500 40 1 4.5060 1.2562 8.6753 41 1 4.0598 1.9164 6.3497 42 1 2.0472 1.9301 -2.4733 43 1 0.7800 1.2748 -3.5378 44 1 0.5271 1.3203 -1.7765 45 1 2.5447 -0.1875 -4.4275 46 1 3.0941 -1.5453 -3.4162 47 1 0.3178 -3.7857 -6.4791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840655923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:03 Heat of formation + Delta-G solvation = -117.076610 kcal Electronic energy + Delta-G solvation = -30291.444457 eV Core-core repulsion = 26019.395008 eV Total energy + Delta-G solvation = -4272.049448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.44986 -40.50701 -39.11068 -37.83392 -36.45694 -35.08483 -34.77654 -32.87970 -31.96980 -31.11527 -30.55564 -28.39650 -27.14524 -26.29703 -24.44540 -24.22218 -22.84890 -22.63229 -21.32426 -20.24461 -18.97522 -18.49994 -17.92981 -17.21400 -17.01113 -16.67910 -16.33963 -16.01703 -15.61714 -15.38213 -14.93809 -14.76341 -14.68564 -14.40537 -14.23868 -13.99982 -13.64556 -13.47860 -13.25722 -13.05715 -12.85843 -12.51024 -12.38080 -12.32546 -12.18063 -11.88672 -11.87730 -11.67055 -11.56136 -11.41667 -11.37465 -10.94689 -10.89061 -10.82707 -10.56566 -10.44335 -10.19880 -9.60362 -9.14911 -9.09598 -8.64115 -8.52833 -7.84176 -6.14049 -4.13742 0.95141 1.06022 1.78167 1.93438 3.07897 3.11049 3.26248 3.32164 3.34260 3.40751 3.70561 4.07784 4.26242 4.32941 4.35092 4.39585 4.55355 4.67724 4.72548 4.77184 4.89575 4.91525 4.99732 5.06363 5.14838 5.18864 5.19359 5.36749 5.44764 5.52861 5.57504 5.60450 5.66804 5.69536 5.75036 5.91878 5.98985 6.09350 6.17600 6.20289 6.24169 6.39423 6.60138 6.85876 7.01748 7.18393 7.51901 7.54298 8.04799 8.39236 8.74733 8.88657 9.45485 10.98966 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.002079 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.155455 B =13463.944015 C =13832.454765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.074 3.926 3 H 0.106 0.894 4 O -0.319 6.319 5 C 0.469 3.531 6 O -0.486 6.486 7 C 0.106 3.894 8 H 0.115 0.885 9 C -0.150 4.150 10 C -0.077 4.077 11 C -0.160 4.160 12 C -0.084 4.084 13 C -0.151 4.151 14 C -0.089 4.089 15 C -0.143 4.143 16 C 0.134 3.866 17 O -0.294 6.294 18 C 0.513 3.487 19 O -0.520 6.520 20 N -0.590 5.590 21 C 0.066 3.934 22 C 0.216 3.784 23 C -0.533 4.533 24 H 0.076 0.924 25 C 0.073 3.927 26 N -0.895 5.895 27 Si 0.876 3.124 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.266 1.266 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.049 0.951 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.034 0.966 46 H 0.039 0.961 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.343 7.489 25.733 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 H 0.124 0.876 4 O -0.234 6.234 5 C 0.310 3.690 6 O -0.372 6.372 7 C 0.048 3.952 8 H 0.133 0.867 9 C -0.188 4.188 10 C -0.113 4.113 11 C -0.161 4.161 12 C -0.102 4.102 13 C -0.170 4.170 14 C -0.107 4.107 15 C -0.162 4.162 16 C 0.089 3.911 17 O -0.208 6.208 18 C 0.297 3.703 19 O -0.395 6.395 20 N -0.324 5.324 21 C -0.078 4.078 22 C 0.096 3.904 23 C -0.571 4.571 24 H 0.094 0.906 25 C -0.129 4.129 26 N -0.533 5.533 27 Si 0.703 3.297 28 H -0.198 1.198 29 H -0.210 1.210 30 H -0.190 1.190 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.057 0.943 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.504 7.339 25.479 26.895 hybrid contribution 0.606 -0.073 -0.673 0.908 sum 5.110 7.266 24.806 26.349 Atomic orbital electron populations 1.22323 0.91766 1.04504 1.04323 1.22674 0.96234 0.97405 0.82127 0.87618 1.86572 1.76577 1.41062 1.19187 1.22825 0.75222 0.85825 0.85121 1.90686 1.46486 1.16146 1.83875 1.21617 1.00986 0.88027 0.84571 0.86725 1.22240 0.97831 0.99296 0.99396 1.20518 1.00605 0.96280 0.93945 1.19891 1.04832 0.94979 0.96383 1.20912 0.97690 0.99591 0.92007 1.21052 1.01737 0.94192 0.99977 1.20943 0.98586 0.96470 0.94664 1.20628 1.01998 1.00289 0.93283 1.18691 0.95847 0.93134 0.83422 1.85992 1.85888 1.33713 1.15185 1.19729 0.80742 0.86037 0.83773 1.90700 1.41679 1.21341 1.85773 1.47721 1.61040 1.17384 1.06222 1.22026 0.98007 0.83645 1.04074 1.19750 0.97265 0.92246 0.81134 1.21303 0.98772 1.25722 1.11298 0.90622 1.24850 0.96526 0.94681 0.96892 1.69887 1.30865 1.28009 1.24553 0.86851 0.84358 0.79264 0.79229 1.19836 1.21005 1.19038 0.91102 0.88685 0.90344 0.89593 0.87594 0.89547 0.89088 0.85612 0.85791 0.85296 0.84993 0.93213 0.89839 0.91321 0.94804 0.94277 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 9.14 37.16 0.34 -2.03 16 2 C 0.07 1.19 2.16 -27.88 -0.06 1.13 16 3 H 0.11 1.56 6.73 -51.93 -0.35 1.21 16 4 O -0.32 -5.06 9.43 -45.85 -0.43 -5.50 16 5 C 0.47 6.73 7.27 36.00 0.26 7.00 16 6 O -0.49 -7.96 15.74 -25.44 -0.40 -8.36 16 7 C 0.11 1.22 3.32 -27.68 -0.09 1.12 16 8 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 9 C -0.15 -1.37 5.47 -26.49 -0.14 -1.52 16 10 C -0.08 -0.58 5.86 -27.82 -0.16 -0.74 16 11 C -0.16 -1.46 5.75 -104.44 -0.60 -2.06 16 12 C -0.08 -0.64 9.67 -39.53 -0.38 -1.02 16 13 C -0.15 -1.08 10.04 -39.61 -0.40 -1.48 16 14 C -0.09 -0.67 10.04 -39.66 -0.40 -1.07 16 15 C -0.14 -1.37 9.94 -39.34 -0.39 -1.76 16 16 C 0.13 1.46 6.47 -39.20 -0.25 1.21 16 17 O -0.29 -3.74 9.47 -39.04 -0.37 -4.10 16 18 C 0.51 10.53 7.03 -10.99 -0.08 10.45 16 19 O -0.52 -12.81 16.08 -13.95 -0.22 -13.03 16 20 N -0.59 -11.94 2.86 -182.95 -0.52 -12.46 16 21 C 0.07 0.98 9.80 59.85 0.59 1.57 16 22 C 0.22 5.18 4.25 -5.19 -0.02 5.16 16 23 C -0.53 -14.91 9.94 -34.44 -0.34 -15.25 16 24 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 25 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 26 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 27 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 28 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.25 5.46 -51.93 -0.28 0.97 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 43 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 44 H 0.07 0.86 4.31 -51.93 -0.22 0.64 16 45 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 46 H 0.04 1.00 6.79 -51.93 -0.35 0.65 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 389.57 15.07 5.87 5.87 Total: -1.00 -35.72 389.57 -8.87 -44.59 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.66 Total: 0.07 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.23 Total: 2.69 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.25 Total: -38.76 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.43 Total: -30.99 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.72 -8.87 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840655923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.491 kcal (2) G-P(sol) polarization free energy of solvation -35.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds