Wall clock time and date at job start Wed Apr 1 2020 04:54:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 109.47173 * 2 1
4 4 O 1.45202 * 109.47460 * 119.99736 * 2 1 3
5 5 C 1.34228 * 117.00186 * 270.00497 * 4 2 1
6 6 O 1.20830 * 119.99885 * 359.97438 * 5 4 2
7 7 C 1.50698 * 119.99930 * 179.97438 * 5 4 2
8 8 H 1.09003 * 109.71278 * 54.45932 * 7 5 4
9 9 C 1.53403 * 109.68701 * 293.91079 * 7 5 4
10 10 C 1.53060 * 108.31812 * 175.58703 * 9 7 5
11 11 C 1.50771 * 109.68844 * 48.16400 * 10 9 7
12 12 C 1.38516 * 118.76299 * 162.41721 * 11 10 9
13 13 C 1.38102 * 120.31116 * 179.50813 * 12 11 10
14 14 C 1.38287 * 119.98785 * 0.03929 * 13 12 11
15 15 C 1.37970 * 119.95675 * 0.08796 * 14 13 12
16 16 C 1.38362 * 121.40542 * 342.13753 * 11 10 9
17 17 O 1.35842 * 121.80759 * 0.65078 * 16 11 10
18 18 C 1.50701 * 109.47248 * 240.00033 * 2 1 3
19 19 O 1.21286 * 119.99478 * 248.56710 * 18 2 1
20 20 N 1.34767 * 120.00172 * 68.56843 * 18 2 1
21 21 C 1.46504 * 120.00102 * 4.58105 * 20 18 2
22 22 C 1.46504 * 120.00264 * 184.58499 * 20 18 2
23 23 C 1.50703 * 109.47044 * 89.99683 * 22 20 18
24 24 H 1.07998 * 119.99824 * 359.97438 * 23 22 20
25 25 C 1.37877 * 120.00015 * 180.02562 * 23 22 20
26 26 N 1.31508 * 120.00059 * 179.97438 * 25 23 22
27 27 Si 1.86811 * 119.99844 * 0.02562 * 25 23 22
28 28 H 1.48500 * 109.47037 * 89.99843 * 27 25 23
29 29 H 1.48498 * 109.46895 * 209.99618 * 27 25 23
30 30 H 1.48499 * 109.46885 * 329.99952 * 27 25 23
31 31 H 1.09001 * 109.46971 * 307.15234 * 1 2 3
32 32 H 1.09000 * 109.46994 * 67.15236 * 1 2 3
33 33 H 1.08997 * 109.47158 * 187.15449 * 1 2 3
34 34 H 1.09000 * 109.69561 * 295.29113 * 9 7 5
35 35 H 1.09003 * 109.69493 * 55.87653 * 9 7 5
36 36 H 1.09002 * 109.43538 * 288.09937 * 10 9 7
37 37 H 1.09002 * 109.43494 * 168.22933 * 10 9 7
38 38 H 1.07998 * 119.84255 * 359.53151 * 12 11 10
39 39 H 1.08003 * 120.00553 * 180.02562 * 13 12 11
40 40 H 1.08000 * 120.02198 * 179.81429 * 14 13 12
41 41 H 1.08001 * 119.89336 * 179.97438 * 15 14 13
42 42 H 1.09008 * 109.46627 * 86.12084 * 21 20 18
43 43 H 1.09000 * 109.47194 * 206.12082 * 21 20 18
44 44 H 1.08996 * 109.46909 * 326.12741 * 21 20 18
45 45 H 1.09004 * 109.47236 * 209.99943 * 22 20 18
46 46 H 1.08995 * 109.47017 * 329.99948 * 22 20 18
47 47 H 0.97004 * 120.00098 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0141 -0.6844 1.1856
5 6 2.2171 0.0641 2.2811
6 8 1.9981 1.2519 2.2503
7 6 2.7183 -0.5771 3.5495
8 1 3.6382 -1.1252 3.3457
9 6 1.6553 -1.5375 4.0980
10 6 2.2373 -2.2522 5.3200
11 6 2.8701 -1.2435 6.2448
12 6 3.1238 -1.6091 7.5565
13 6 3.7117 -0.7138 8.4284
14 6 4.0490 0.5547 7.9931
15 6 3.7963 0.9253 6.6884
16 6 3.2032 0.0262 5.8075
17 8 2.9657 0.4295 4.5322
18 6 2.0323 -0.7104 -1.2305
19 8 2.5963 -1.7790 -1.1258
20 7 1.8549 -0.1583 -2.4470
21 6 1.2645 1.1772 -2.5663
22 6 2.2524 -0.8935 -3.6502
23 6 1.0934 -1.7249 -4.1367
24 1 0.1548 -1.7077 -3.6027
25 6 1.2317 -2.5084 -5.2628
26 7 0.2204 -3.2342 -5.6870
27 14 2.8559 -2.5398 -6.1851
28 1 3.7176 -3.6161 -5.6335
29 1 2.6024 -2.7980 -7.6253
30 1 3.5388 -1.2304 -6.0295
31 1 -0.3633 0.6207 0.8191
32 1 -0.3633 0.3990 -0.9470
33 1 -0.3633 -1.0196 0.1280
34 1 0.7678 -0.9756 4.3893
35 1 1.3927 -2.2698 3.3345
36 1 2.9911 -2.9697 4.9956
37 1 1.4405 -2.7774 5.8467
38 1 2.8610 -2.5991 7.8990
39 1 3.9076 -1.0043 9.4500
40 1 4.5060 1.2562 8.6753
41 1 4.0598 1.9164 6.3497
42 1 2.0472 1.9301 -2.4733
43 1 0.7800 1.2748 -3.5378
44 1 0.5271 1.3203 -1.7765
45 1 2.5447 -0.1875 -4.4275
46 1 3.0941 -1.5453 -3.4162
47 1 0.3178 -3.7857 -6.4791
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000840655923.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:54:03
Heat of formation + Delta-G solvation = -117.076610 kcal
Electronic energy + Delta-G solvation = -30291.444457 eV
Core-core repulsion = 26019.395008 eV
Total energy + Delta-G solvation = -4272.049448 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.44986 -40.50701 -39.11068 -37.83392 -36.45694 -35.08483 -34.77654 -32.87970
-31.96980 -31.11527 -30.55564 -28.39650 -27.14524 -26.29703 -24.44540 -24.22218
-22.84890 -22.63229 -21.32426 -20.24461 -18.97522 -18.49994 -17.92981 -17.21400
-17.01113 -16.67910 -16.33963 -16.01703 -15.61714 -15.38213 -14.93809 -14.76341
-14.68564 -14.40537 -14.23868 -13.99982 -13.64556 -13.47860 -13.25722 -13.05715
-12.85843 -12.51024 -12.38080 -12.32546 -12.18063 -11.88672 -11.87730 -11.67055
-11.56136 -11.41667 -11.37465 -10.94689 -10.89061 -10.82707 -10.56566 -10.44335
-10.19880 -9.60362 -9.14911 -9.09598 -8.64115 -8.52833 -7.84176 -6.14049
-4.13742 0.95141 1.06022 1.78167 1.93438 3.07897 3.11049 3.26248
3.32164 3.34260 3.40751 3.70561 4.07784 4.26242 4.32941 4.35092
4.39585 4.55355 4.67724 4.72548 4.77184 4.89575 4.91525 4.99732
5.06363 5.14838 5.18864 5.19359 5.36749 5.44764 5.52861 5.57504
5.60450 5.66804 5.69536 5.75036 5.91878 5.98985 6.09350 6.17600
6.20289 6.24169 6.39423 6.60138 6.85876 7.01748 7.18393 7.51901
7.54298 8.04799 8.39236 8.74733 8.88657 9.45485 10.98966
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.023640 B = 0.002079 C = 0.002024
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1184.155455 B =13463.944015 C =13832.454765
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.074 3.926
3 H 0.106 0.894
4 O -0.319 6.319
5 C 0.469 3.531
6 O -0.486 6.486
7 C 0.106 3.894
8 H 0.115 0.885
9 C -0.150 4.150
10 C -0.077 4.077
11 C -0.160 4.160
12 C -0.084 4.084
13 C -0.151 4.151
14 C -0.089 4.089
15 C -0.143 4.143
16 C 0.134 3.866
17 O -0.294 6.294
18 C 0.513 3.487
19 O -0.520 6.520
20 N -0.590 5.590
21 C 0.066 3.934
22 C 0.216 3.784
23 C -0.533 4.533
24 H 0.076 0.924
25 C 0.073 3.927
26 N -0.895 5.895
27 Si 0.876 3.124
28 H -0.273 1.273
29 H -0.284 1.284
30 H -0.266 1.266
31 H 0.070 0.930
32 H 0.095 0.905
33 H 0.078 0.922
34 H 0.085 0.915
35 H 0.106 0.894
36 H 0.086 0.914
37 H 0.091 0.909
38 H 0.126 0.874
39 H 0.124 0.876
40 H 0.129 0.871
41 H 0.132 0.868
42 H 0.049 0.951
43 H 0.083 0.917
44 H 0.068 0.932
45 H 0.034 0.966
46 H 0.039 0.961
47 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.343 7.489 25.733 27.151
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.016 3.984
3 H 0.124 0.876
4 O -0.234 6.234
5 C 0.310 3.690
6 O -0.372 6.372
7 C 0.048 3.952
8 H 0.133 0.867
9 C -0.188 4.188
10 C -0.113 4.113
11 C -0.161 4.161
12 C -0.102 4.102
13 C -0.170 4.170
14 C -0.107 4.107
15 C -0.162 4.162
16 C 0.089 3.911
17 O -0.208 6.208
18 C 0.297 3.703
19 O -0.395 6.395
20 N -0.324 5.324
21 C -0.078 4.078
22 C 0.096 3.904
23 C -0.571 4.571
24 H 0.094 0.906
25 C -0.129 4.129
26 N -0.533 5.533
27 Si 0.703 3.297
28 H -0.198 1.198
29 H -0.210 1.210
30 H -0.190 1.190
31 H 0.089 0.911
32 H 0.113 0.887
33 H 0.097 0.903
34 H 0.104 0.896
35 H 0.124 0.876
36 H 0.105 0.895
37 H 0.109 0.891
38 H 0.144 0.856
39 H 0.142 0.858
40 H 0.147 0.853
41 H 0.150 0.850
42 H 0.068 0.932
43 H 0.102 0.898
44 H 0.087 0.913
45 H 0.052 0.948
46 H 0.057 0.943
47 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 4.504 7.339 25.479 26.895
hybrid contribution 0.606 -0.073 -0.673 0.908
sum 5.110 7.266 24.806 26.349
Atomic orbital electron populations
1.22323 0.91766 1.04504 1.04323 1.22674 0.96234 0.97405 0.82127
0.87618 1.86572 1.76577 1.41062 1.19187 1.22825 0.75222 0.85825
0.85121 1.90686 1.46486 1.16146 1.83875 1.21617 1.00986 0.88027
0.84571 0.86725 1.22240 0.97831 0.99296 0.99396 1.20518 1.00605
0.96280 0.93945 1.19891 1.04832 0.94979 0.96383 1.20912 0.97690
0.99591 0.92007 1.21052 1.01737 0.94192 0.99977 1.20943 0.98586
0.96470 0.94664 1.20628 1.01998 1.00289 0.93283 1.18691 0.95847
0.93134 0.83422 1.85992 1.85888 1.33713 1.15185 1.19729 0.80742
0.86037 0.83773 1.90700 1.41679 1.21341 1.85773 1.47721 1.61040
1.17384 1.06222 1.22026 0.98007 0.83645 1.04074 1.19750 0.97265
0.92246 0.81134 1.21303 0.98772 1.25722 1.11298 0.90622 1.24850
0.96526 0.94681 0.96892 1.69887 1.30865 1.28009 1.24553 0.86851
0.84358 0.79264 0.79229 1.19836 1.21005 1.19038 0.91102 0.88685
0.90344 0.89593 0.87594 0.89547 0.89088 0.85612 0.85791 0.85296
0.84993 0.93213 0.89839 0.91321 0.94804 0.94277 0.92476
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.37 9.14 37.16 0.34 -2.03 16
2 C 0.07 1.19 2.16 -27.88 -0.06 1.13 16
3 H 0.11 1.56 6.73 -51.93 -0.35 1.21 16
4 O -0.32 -5.06 9.43 -45.85 -0.43 -5.50 16
5 C 0.47 6.73 7.27 36.00 0.26 7.00 16
6 O -0.49 -7.96 15.74 -25.44 -0.40 -8.36 16
7 C 0.11 1.22 3.32 -27.68 -0.09 1.12 16
8 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16
9 C -0.15 -1.37 5.47 -26.49 -0.14 -1.52 16
10 C -0.08 -0.58 5.86 -27.82 -0.16 -0.74 16
11 C -0.16 -1.46 5.75 -104.44 -0.60 -2.06 16
12 C -0.08 -0.64 9.67 -39.53 -0.38 -1.02 16
13 C -0.15 -1.08 10.04 -39.61 -0.40 -1.48 16
14 C -0.09 -0.67 10.04 -39.66 -0.40 -1.07 16
15 C -0.14 -1.37 9.94 -39.34 -0.39 -1.76 16
16 C 0.13 1.46 6.47 -39.20 -0.25 1.21 16
17 O -0.29 -3.74 9.47 -39.04 -0.37 -4.10 16
18 C 0.51 10.53 7.03 -10.99 -0.08 10.45 16
19 O -0.52 -12.81 16.08 -13.95 -0.22 -13.03 16
20 N -0.59 -11.94 2.86 -182.95 -0.52 -12.46 16
21 C 0.07 0.98 9.80 59.85 0.59 1.57 16
22 C 0.22 5.18 4.25 -5.19 -0.02 5.16 16
23 C -0.53 -14.91 9.94 -34.44 -0.34 -15.25 16
24 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16
25 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16
26 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16
27 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16
28 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16
29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
30 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16
31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16
32 H 0.09 1.25 5.46 -51.93 -0.28 0.97 16
33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16
34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16
36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16
38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16
39 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16
40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16
41 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16
42 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16
43 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16
44 H 0.07 0.86 4.31 -51.93 -0.22 0.64 16
45 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16
46 H 0.04 1.00 6.79 -51.93 -0.35 0.65 16
47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16
LS Contribution 389.57 15.07 5.87 5.87
Total: -1.00 -35.72 389.57 -8.87 -44.59
By element:
Atomic # 1 Polarization: 6.73 SS G_CDS: -6.66 Total: 0.07 kcal
Atomic # 6 Polarization: 4.93 SS G_CDS: -2.23 Total: 2.69 kcal
Atomic # 7 Polarization: -39.01 SS G_CDS: 0.25 Total: -38.76 kcal
Atomic # 8 Polarization: -29.57 SS G_CDS: -1.43 Total: -30.99 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -35.72 -8.87 -44.59 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000840655923.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.491 kcal
(2) G-P(sol) polarization free energy of solvation -35.716 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.208 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.586 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.077 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds