Wall clock time and date at job start Wed Apr 1 2020 04:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47173 * 2 1 4 4 O 1.45202 * 109.47460 * 119.99736 * 2 1 3 5 5 C 1.34228 * 117.00186 * 270.00497 * 4 2 1 6 6 O 1.20830 * 119.99885 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99930 * 179.97438 * 5 4 2 8 8 H 1.09003 * 109.71278 * 54.45932 * 7 5 4 9 9 C 1.53403 * 109.68701 * 293.91079 * 7 5 4 10 10 C 1.53060 * 108.31812 * 175.58703 * 9 7 5 11 11 C 1.50771 * 109.68844 * 48.16400 * 10 9 7 12 12 C 1.38516 * 118.76299 * 162.41721 * 11 10 9 13 13 C 1.38102 * 120.31116 * 179.50813 * 12 11 10 14 14 C 1.38287 * 119.98785 * 0.03929 * 13 12 11 15 15 C 1.37970 * 119.95675 * 0.08796 * 14 13 12 16 16 C 1.38362 * 121.40542 * 342.13753 * 11 10 9 17 17 O 1.35842 * 121.80759 * 0.65078 * 16 11 10 18 18 C 1.50701 * 109.47248 * 240.00033 * 2 1 3 19 19 O 1.21286 * 119.99478 * 248.56710 * 18 2 1 20 20 N 1.34767 * 120.00172 * 68.56843 * 18 2 1 21 21 C 1.46504 * 120.00102 * 4.58105 * 20 18 2 22 22 C 1.46504 * 120.00264 * 184.58499 * 20 18 2 23 23 C 1.50703 * 109.47044 * 89.99683 * 22 20 18 24 24 H 1.07998 * 119.99824 * 359.97438 * 23 22 20 25 25 C 1.37877 * 120.00015 * 180.02562 * 23 22 20 26 26 N 1.31508 * 120.00059 * 179.97438 * 25 23 22 27 27 Si 1.86811 * 119.99844 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47037 * 89.99843 * 27 25 23 29 29 H 1.48498 * 109.46895 * 209.99618 * 27 25 23 30 30 H 1.48499 * 109.46885 * 329.99952 * 27 25 23 31 31 H 1.09001 * 109.46971 * 307.15234 * 1 2 3 32 32 H 1.09000 * 109.46994 * 67.15236 * 1 2 3 33 33 H 1.08997 * 109.47158 * 187.15449 * 1 2 3 34 34 H 1.09000 * 109.69561 * 295.29113 * 9 7 5 35 35 H 1.09003 * 109.69493 * 55.87653 * 9 7 5 36 36 H 1.09002 * 109.43538 * 288.09937 * 10 9 7 37 37 H 1.09002 * 109.43494 * 168.22933 * 10 9 7 38 38 H 1.07998 * 119.84255 * 359.53151 * 12 11 10 39 39 H 1.08003 * 120.00553 * 180.02562 * 13 12 11 40 40 H 1.08000 * 120.02198 * 179.81429 * 14 13 12 41 41 H 1.08001 * 119.89336 * 179.97438 * 15 14 13 42 42 H 1.09008 * 109.46627 * 86.12084 * 21 20 18 43 43 H 1.09000 * 109.47194 * 206.12082 * 21 20 18 44 44 H 1.08996 * 109.46909 * 326.12741 * 21 20 18 45 45 H 1.09004 * 109.47236 * 209.99943 * 22 20 18 46 46 H 1.08995 * 109.47017 * 329.99948 * 22 20 18 47 47 H 0.97004 * 120.00098 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6844 1.1856 5 6 2.2171 0.0641 2.2811 6 8 1.9981 1.2519 2.2503 7 6 2.7183 -0.5771 3.5495 8 1 3.6382 -1.1252 3.3457 9 6 1.6553 -1.5375 4.0980 10 6 2.2373 -2.2522 5.3200 11 6 2.8701 -1.2435 6.2448 12 6 3.1238 -1.6091 7.5565 13 6 3.7117 -0.7138 8.4284 14 6 4.0490 0.5547 7.9931 15 6 3.7963 0.9253 6.6884 16 6 3.2032 0.0262 5.8075 17 8 2.9657 0.4295 4.5322 18 6 2.0323 -0.7104 -1.2305 19 8 2.5963 -1.7790 -1.1258 20 7 1.8549 -0.1583 -2.4470 21 6 1.2645 1.1772 -2.5663 22 6 2.2524 -0.8935 -3.6502 23 6 1.0934 -1.7249 -4.1367 24 1 0.1548 -1.7077 -3.6027 25 6 1.2317 -2.5084 -5.2628 26 7 0.2204 -3.2342 -5.6870 27 14 2.8559 -2.5398 -6.1851 28 1 3.7176 -3.6161 -5.6335 29 1 2.6024 -2.7980 -7.6253 30 1 3.5388 -1.2304 -6.0295 31 1 -0.3633 0.6207 0.8191 32 1 -0.3633 0.3990 -0.9470 33 1 -0.3633 -1.0196 0.1280 34 1 0.7678 -0.9756 4.3893 35 1 1.3927 -2.2698 3.3345 36 1 2.9911 -2.9697 4.9956 37 1 1.4405 -2.7774 5.8467 38 1 2.8610 -2.5991 7.8990 39 1 3.9076 -1.0043 9.4500 40 1 4.5060 1.2562 8.6753 41 1 4.0598 1.9164 6.3497 42 1 2.0472 1.9301 -2.4733 43 1 0.7800 1.2748 -3.5378 44 1 0.5271 1.3203 -1.7765 45 1 2.5447 -0.1875 -4.4275 46 1 3.0941 -1.5453 -3.4162 47 1 0.3178 -3.7857 -6.4791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840655923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:02 Heat of formation + Delta-G solvation = -137.818475 kcal Electronic energy + Delta-G solvation = -30292.343891 eV Core-core repulsion = 26019.395008 eV Total energy + Delta-G solvation = -4272.948883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.42512 -41.55153 -40.56600 -38.61172 -37.67473 -36.77699 -35.48125 -34.84494 -33.35499 -31.96569 -31.17952 -30.22465 -27.99167 -27.66426 -25.88308 -24.92359 -24.26277 -23.46148 -22.54530 -21.02539 -20.48819 -19.50285 -19.14604 -18.86293 -18.29542 -17.70036 -17.58655 -17.23224 -16.98462 -16.35820 -16.24201 -16.09175 -15.64589 -15.34158 -15.20153 -15.02720 -14.80581 -14.47137 -14.34138 -14.29444 -14.19489 -13.77952 -13.72434 -13.52020 -13.48134 -13.21053 -12.99994 -12.90902 -12.53017 -12.48542 -12.40634 -12.32790 -12.11064 -12.04224 -12.02455 -11.74567 -11.63356 -11.41822 -10.83519 -10.73247 -9.74662 -9.52658 -9.20550 -8.34046 -6.39517 0.34946 0.41165 0.70697 0.82351 1.33867 1.37621 1.45556 1.49871 2.03787 2.30871 2.44650 2.79427 3.00019 3.22951 3.30018 3.33180 3.65449 3.67539 3.73949 3.74667 3.78935 4.09505 4.18811 4.20744 4.29252 4.43359 4.47957 4.52970 4.57776 4.59731 4.59834 4.74454 4.81473 4.85531 4.90124 4.90737 4.95803 5.06593 5.10083 5.11390 5.30959 5.42261 5.49449 5.50424 5.59206 5.80393 6.20232 6.27753 6.38305 6.49843 6.61999 7.10562 7.26696 8.82236 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.002079 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.155455 B =13463.944015 C =13832.454765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.081 3.919 3 H 0.125 0.875 4 O -0.330 6.330 5 C 0.472 3.528 6 O -0.508 6.508 7 C 0.105 3.895 8 H 0.126 0.874 9 C -0.145 4.145 10 C -0.073 4.073 11 C -0.168 4.168 12 C -0.088 4.088 13 C -0.149 4.149 14 C -0.090 4.090 15 C -0.162 4.162 16 C 0.101 3.899 17 O -0.317 6.317 18 C 0.504 3.496 19 O -0.572 6.572 20 N -0.596 5.596 21 C 0.058 3.942 22 C 0.222 3.778 23 C -0.537 4.537 24 H 0.035 0.965 25 C 0.013 3.987 26 N -0.942 5.942 27 Si 0.945 3.055 28 H -0.277 1.277 29 H -0.276 1.276 30 H -0.238 1.238 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.057 0.943 46 H 0.022 0.978 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 8.311 27.458 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 H 0.142 0.858 4 O -0.246 6.246 5 C 0.315 3.685 6 O -0.396 6.396 7 C 0.048 3.952 8 H 0.143 0.857 9 C -0.183 4.183 10 C -0.110 4.110 11 C -0.169 4.169 12 C -0.105 4.105 13 C -0.167 4.167 14 C -0.108 4.108 15 C -0.180 4.180 16 C 0.058 3.942 17 O -0.232 6.232 18 C 0.291 3.709 19 O -0.451 6.451 20 N -0.328 5.328 21 C -0.084 4.084 22 C 0.101 3.899 23 C -0.576 4.576 24 H 0.053 0.947 25 C -0.185 4.185 26 N -0.581 5.581 27 Si 0.768 3.232 28 H -0.203 1.203 29 H -0.201 1.201 30 H -0.161 1.161 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.169 0.831 39 H 0.169 0.831 40 H 0.171 0.829 41 H 0.147 0.853 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.075 0.925 46 H 0.040 0.960 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.532 8.217 27.224 28.970 hybrid contribution 0.229 -0.307 -1.082 1.148 sum 5.761 7.909 26.142 27.913 Atomic orbital electron populations 1.22314 0.89955 1.04409 1.05611 1.22578 0.97350 0.97230 0.80505 0.85785 1.86581 1.76806 1.41654 1.19533 1.23386 0.74308 0.85547 0.85284 1.90661 1.47666 1.17078 1.84171 1.21725 1.02072 0.88030 0.83385 0.85667 1.22242 0.96999 0.98809 1.00221 1.20576 1.01404 0.95948 0.93031 1.20122 1.04812 0.94554 0.97414 1.21262 0.97118 1.00836 0.91331 1.21453 1.00411 0.93701 1.01175 1.21268 0.98069 0.97358 0.94095 1.20833 1.02656 1.00297 0.94242 1.19019 0.97785 0.94563 0.82881 1.85938 1.86581 1.34547 1.16160 1.20515 0.79751 0.85597 0.85068 1.90661 1.44022 1.23725 1.86720 1.47798 1.60885 1.18893 1.05205 1.22358 0.99534 0.81462 1.05013 1.19461 0.94946 0.92408 0.83119 1.21515 0.98577 1.26495 1.10983 0.94659 1.25806 1.00517 0.94179 0.98043 1.70033 1.33409 1.29225 1.25466 0.85761 0.79330 0.80366 0.77789 1.20268 1.20071 1.16097 0.88778 0.88020 0.91481 0.90018 0.87227 0.88476 0.87017 0.83145 0.83093 0.82948 0.85322 0.90048 0.89986 0.88933 0.92505 0.96036 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.41 9.14 71.98 0.66 -3.75 16 2 C 0.08 2.57 2.16 29.85 0.06 2.63 16 3 H 0.12 3.46 6.73 -2.39 -0.02 3.44 16 4 O -0.33 -10.50 9.43 -45.08 -0.43 -10.93 16 5 C 0.47 13.52 7.27 71.24 0.52 14.04 16 6 O -0.51 -16.50 15.74 28.34 0.45 -16.06 16 7 C 0.11 2.42 3.32 29.98 0.10 2.52 16 8 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 9 C -0.15 -2.56 5.47 30.75 0.17 -2.39 16 10 C -0.07 -0.98 5.86 29.89 0.18 -0.80 16 11 C -0.17 -2.84 5.75 -19.75 -0.11 -2.96 16 12 C -0.09 -1.11 9.67 22.30 0.22 -0.90 16 13 C -0.15 -1.73 10.04 22.25 0.22 -1.50 16 14 C -0.09 -1.21 10.04 22.22 0.22 -0.98 16 15 C -0.16 -3.05 9.94 22.42 0.22 -2.83 16 16 C 0.10 2.19 6.47 22.52 0.15 2.34 16 17 O -0.32 -8.20 9.47 -72.85 -0.69 -8.89 16 18 C 0.50 20.83 7.03 87.66 0.62 21.45 16 19 O -0.57 -29.03 16.08 15.60 0.25 -28.78 16 20 N -0.60 -23.82 2.86 -851.11 -2.43 -26.25 16 21 C 0.06 1.60 9.80 127.77 1.25 2.85 16 22 C 0.22 10.60 4.25 85.63 0.36 10.96 16 23 C -0.54 -30.76 9.94 25.60 0.25 -30.50 16 24 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 25 C 0.01 0.75 5.47 84.66 0.46 1.22 16 26 N -0.94 -58.38 13.96 21.45 0.30 -58.08 16 27 Si 0.94 43.63 27.47 68.60 1.88 45.51 16 28 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 29 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 30 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 31 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.10 2.54 5.46 -2.39 -0.01 2.53 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 40 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 41 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.08 2.32 8.04 -2.39 -0.02 2.30 16 44 H 0.09 2.12 4.31 -2.39 -0.01 2.11 16 45 H 0.06 2.45 7.13 -2.39 -0.02 2.44 16 46 H 0.02 1.11 6.79 -2.39 -0.02 1.09 16 47 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -80.85 389.57 5.81 -75.04 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.93 Total: 17.03 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.55 Total: 11.40 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -2.13 Total: -84.33 kcal Atomic # 8 Polarization: -64.23 SS G_CDS: -0.42 Total: -64.65 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.51 kcal Total: -80.85 5.81 -75.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840655923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.782 kcal (2) G-P(sol) polarization free energy of solvation -80.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds