Wall clock time and date at job start Wed Apr 1 2020 04:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46859 * 2 1 4 4 O 1.45197 * 109.46760 * 240.00460 * 2 1 3 5 5 C 1.34228 * 117.00333 * 89.99885 * 4 2 1 6 6 O 1.20833 * 119.99855 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00531 * 179.97438 * 5 4 2 8 8 H 1.08994 * 109.70621 * 54.45782 * 7 5 4 9 9 C 1.53416 * 109.67900 * 293.92291 * 7 5 4 10 10 C 1.53072 * 108.29275 * 175.55750 * 9 7 5 11 11 C 1.50770 * 109.68043 * 48.20656 * 10 9 7 12 12 C 1.38506 * 118.76453 * 162.30233 * 11 10 9 13 13 C 1.38104 * 120.31729 * 179.75691 * 12 11 10 14 14 C 1.38289 * 119.98295 * 0.02562 * 13 12 11 15 15 C 1.37975 * 119.95826 * 0.08203 * 14 13 12 16 16 C 1.38377 * 121.40385 * 342.18726 * 11 10 9 17 17 O 1.35838 * 121.80546 * 0.45548 * 16 11 10 18 18 C 1.50694 * 109.47246 * 120.00582 * 2 1 3 19 19 O 1.21280 * 120.00151 * 120.00350 * 18 2 1 20 20 N 1.34781 * 119.99818 * 299.99802 * 18 2 1 21 21 C 1.46503 * 119.99924 * 0.02562 * 20 18 2 22 22 C 1.46499 * 119.99872 * 180.02562 * 20 18 2 23 23 C 1.50704 * 109.47063 * 90.00238 * 22 20 18 24 24 H 1.07998 * 119.99752 * 359.97438 * 23 22 20 25 25 C 1.37882 * 119.99641 * 180.02562 * 23 22 20 26 26 N 1.31509 * 120.00405 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99614 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47026 * 59.99832 * 27 25 23 29 29 H 1.48499 * 109.46701 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.46820 * 299.99752 * 27 25 23 31 31 H 1.08995 * 109.47064 * 299.99489 * 1 2 3 32 32 H 1.08998 * 109.47135 * 59.99923 * 1 2 3 33 33 H 1.09003 * 109.46859 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.69597 * 295.25843 * 9 7 5 35 35 H 1.08996 * 109.69820 * 55.85395 * 9 7 5 36 36 H 1.09000 * 109.43483 * 168.27011 * 10 9 7 37 37 H 1.08998 * 109.43670 * 288.14295 * 10 9 7 38 38 H 1.08001 * 119.84191 * 359.78131 * 12 11 10 39 39 H 1.08001 * 120.00948 * 180.02562 * 13 12 11 40 40 H 1.08001 * 120.02585 * 180.35770 * 14 13 12 41 41 H 1.08000 * 119.89049 * 179.91245 * 15 14 13 42 42 H 1.08999 * 109.46699 * 90.00458 * 21 20 18 43 43 H 1.09006 * 109.47206 * 209.99974 * 21 20 18 44 44 H 1.08991 * 109.47245 * 330.00097 * 21 20 18 45 45 H 1.08999 * 109.46817 * 209.99913 * 22 20 18 46 46 H 1.09001 * 109.47351 * 330.00131 * 22 20 18 47 47 H 0.96996 * 120.00392 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2812 6 8 1.9973 1.2519 -2.2506 7 6 2.7192 -0.5768 -3.5493 8 1 2.0651 -1.4031 -3.8274 9 6 4.1465 -1.0971 -3.3352 10 6 4.5828 -1.8379 -4.6017 11 6 4.2778 -0.9947 -5.8137 12 6 4.9107 -1.2924 -7.0092 13 6 4.6512 -0.5441 -8.1406 14 6 3.7561 0.5085 -8.0828 15 6 3.1243 0.8111 -6.8941 16 6 3.3832 0.0593 -5.7523 17 8 2.7453 0.3906 -4.5996 18 6 2.0324 -0.7105 1.2303 19 8 2.7297 -1.6965 1.1190 20 7 1.7068 -0.2501 2.4545 21 6 0.8641 0.9407 2.5890 22 6 2.1957 -0.9405 3.6506 23 6 3.5230 -0.3564 4.0605 24 1 3.9591 0.4483 3.4872 25 6 4.1812 -0.8501 5.1670 26 7 3.6505 -1.8302 5.8649 27 14 5.8269 -0.1265 5.6747 28 1 5.6618 1.3193 5.9708 29 1 6.3229 -0.8271 6.8864 30 1 6.8045 -0.2971 4.5699 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 4.8187 -0.2595 -3.1494 35 1 4.1652 -1.7794 -2.4855 36 1 5.6541 -2.0337 -4.5563 37 1 4.0447 -2.7831 -4.6726 38 1 5.6102 -2.1138 -7.0569 39 1 5.1473 -0.7808 -9.0703 40 1 3.5483 1.0905 -8.9685 41 1 2.4265 1.6342 -6.8499 42 1 -0.1837 0.6423 2.6226 43 1 1.1219 1.4663 3.5085 44 1 1.0272 1.5994 1.7361 45 1 1.4778 -0.8153 4.4612 46 1 2.3172 -2.0017 3.4335 47 1 4.1133 -2.1773 6.6434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840655929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:16 Heat of formation + Delta-G solvation = -121.844815 kcal Electronic energy + Delta-G solvation = -30351.333799 eV Core-core repulsion = 26079.077586 eV Total energy + Delta-G solvation = -4272.256213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40442 -40.45972 -39.02210 -37.79152 -36.39641 -35.00652 -34.71961 -32.97562 -31.87428 -31.02674 -30.51780 -27.75138 -27.08586 -26.26180 -24.45979 -24.14248 -22.87447 -22.77524 -21.34760 -20.24844 -18.98696 -18.44126 -17.86054 -17.12980 -16.79199 -16.55510 -16.09151 -16.02695 -15.56156 -15.33404 -14.98107 -14.67308 -14.60702 -14.39201 -14.10329 -13.92143 -13.58078 -13.53488 -13.29676 -12.92949 -12.80475 -12.49494 -12.27055 -12.18265 -12.13880 -11.82497 -11.70150 -11.61128 -11.43618 -11.32212 -11.18618 -10.96879 -10.84632 -10.78106 -10.60453 -10.39957 -10.20508 -9.70836 -9.11412 -8.97923 -8.49157 -8.47852 -7.78303 -6.09138 -4.14340 0.98589 1.09509 1.83742 1.96789 3.15547 3.19859 3.29785 3.34085 3.37988 3.43951 3.78811 4.14678 4.32464 4.37981 4.40865 4.45560 4.56116 4.74099 4.76667 4.82493 4.92328 4.95381 5.03345 5.10483 5.18750 5.24075 5.25452 5.44867 5.52645 5.59034 5.60724 5.61855 5.66485 5.76546 5.79350 5.94134 5.95463 6.13297 6.18156 6.20778 6.27009 6.42921 6.93111 7.05390 7.34092 7.41093 7.58100 7.86427 8.16073 8.23221 8.78982 8.94067 9.50782 10.98918 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.002293 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.371424 B =12209.854566 C =13219.358620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.108 0.892 4 O -0.319 6.319 5 C 0.469 3.531 6 O -0.486 6.486 7 C 0.107 3.893 8 H 0.114 0.886 9 C -0.152 4.152 10 C -0.076 4.076 11 C -0.159 4.159 12 C -0.084 4.084 13 C -0.152 4.152 14 C -0.089 4.089 15 C -0.144 4.144 16 C 0.134 3.866 17 O -0.294 6.294 18 C 0.509 3.491 19 O -0.519 6.519 20 N -0.594 5.594 21 C 0.075 3.925 22 C 0.247 3.753 23 C -0.530 4.530 24 H 0.057 0.943 25 C 0.062 3.938 26 N -0.894 5.894 27 Si 0.899 3.101 28 H -0.276 1.276 29 H -0.286 1.286 30 H -0.276 1.276 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.037 0.963 46 H 0.046 0.954 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 2.792 -24.868 25.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.013 3.987 3 H 0.125 0.875 4 O -0.234 6.234 5 C 0.310 3.690 6 O -0.372 6.372 7 C 0.050 3.950 8 H 0.131 0.869 9 C -0.190 4.190 10 C -0.113 4.113 11 C -0.160 4.160 12 C -0.102 4.102 13 C -0.170 4.170 14 C -0.107 4.107 15 C -0.162 4.162 16 C 0.089 3.911 17 O -0.208 6.208 18 C 0.294 3.706 19 O -0.395 6.395 20 N -0.328 5.328 21 C -0.069 4.069 22 C 0.129 3.871 23 C -0.569 4.569 24 H 0.075 0.925 25 C -0.140 4.140 26 N -0.532 5.532 27 Si 0.726 3.274 28 H -0.202 1.202 29 H -0.211 1.211 30 H -0.201 1.201 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.686 2.673 -24.622 25.039 hybrid contribution 0.934 0.501 0.444 1.149 sum -2.752 3.174 -24.178 24.540 Atomic orbital electron populations 1.22421 0.92220 1.04245 1.04487 1.22696 0.95834 0.97770 0.82393 0.87460 1.86547 1.76597 1.41082 1.19188 1.22826 0.75137 0.85868 0.85184 1.90688 1.46554 1.16142 1.83810 1.21600 0.99388 0.90158 0.83886 0.86884 1.22267 0.93692 1.02720 1.00308 1.20520 1.03089 0.97671 0.90017 1.19912 0.99989 0.99170 0.96961 1.20916 0.98575 0.99153 0.91548 1.21048 1.00273 0.97042 0.98628 1.20937 0.95815 0.97056 0.96900 1.20616 1.03262 1.02044 0.90319 1.18695 0.92280 0.94830 0.85273 1.85979 1.72170 1.41103 1.21554 1.19711 0.81755 0.85400 0.83770 1.90704 1.36953 1.25978 1.85850 1.48063 1.49749 1.28374 1.06620 1.21902 0.93971 0.88026 1.03008 1.19360 0.94378 0.93739 0.79654 1.21380 1.04859 1.19258 1.11412 0.92475 1.24929 0.97985 0.94906 0.96189 1.69911 1.39087 1.25910 1.18327 0.86545 0.83798 0.79074 0.77943 1.20200 1.21109 1.20149 0.88679 0.91257 0.90848 0.89551 0.87293 0.89044 0.89622 0.85607 0.85808 0.85320 0.85019 0.92931 0.90228 0.92262 0.94546 0.93606 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.18 37.16 0.34 -1.90 16 2 C 0.07 1.17 2.18 -27.88 -0.06 1.10 16 3 H 0.11 1.71 6.42 -51.93 -0.33 1.38 16 4 O -0.32 -5.18 9.41 -45.90 -0.43 -5.61 16 5 C 0.47 7.01 7.27 36.01 0.26 7.27 16 6 O -0.49 -8.32 15.74 -25.44 -0.40 -8.72 16 7 C 0.11 1.29 3.32 -27.67 -0.09 1.19 16 8 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 9 C -0.15 -1.63 5.47 -26.48 -0.14 -1.78 16 10 C -0.08 -0.65 5.86 -27.81 -0.16 -0.81 16 11 C -0.16 -1.56 5.75 -104.44 -0.60 -2.16 16 12 C -0.08 -0.68 9.67 -39.53 -0.38 -1.07 16 13 C -0.15 -1.15 10.04 -39.61 -0.40 -1.54 16 14 C -0.09 -0.70 10.04 -39.66 -0.40 -1.10 16 15 C -0.14 -1.42 9.94 -39.34 -0.39 -1.81 16 16 C 0.13 1.53 6.47 -39.19 -0.25 1.27 16 17 O -0.29 -3.87 9.47 -39.03 -0.37 -4.24 16 18 C 0.51 10.66 7.15 -10.99 -0.08 10.58 16 19 O -0.52 -13.09 16.08 -14.10 -0.23 -13.32 16 20 N -0.59 -12.33 2.86 -182.95 -0.52 -12.86 16 21 C 0.07 1.13 8.80 59.85 0.53 1.66 16 22 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 23 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 24 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 25 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 26 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 27 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 31 H 0.09 1.06 4.53 -51.93 -0.24 0.82 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 41 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.05 0.65 6.95 -51.93 -0.36 0.29 16 43 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 44 H 0.06 0.76 6.00 -51.93 -0.31 0.45 16 45 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 46 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -35.08 391.68 -9.27 -44.35 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.66 Total: -0.44 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.28 Total: 3.70 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.21 Total: -38.30 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -1.43 Total: -31.90 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.08 -9.27 -44.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840655929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.494 kcal (2) G-P(sol) polarization free energy of solvation -35.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds