Wall clock time and date at job start Wed Apr 1 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42900 * 109.47133 * 2 1 4 4 C 1.42897 * 114.00351 * 184.99169 * 3 2 1 5 5 H 1.09007 * 109.47059 * 334.77827 * 4 3 2 6 6 C 1.50695 * 109.47421 * 94.78075 * 4 3 2 7 7 O 1.20828 * 119.99921 * 4.99800 * 6 4 3 8 8 O 1.34238 * 120.00001 * 185.00220 * 6 4 3 9 9 C 1.45201 * 116.99545 * 179.97438 * 8 6 4 10 10 C 1.50702 * 109.46446 * 180.02562 * 9 8 6 11 11 O 1.21278 * 120.00389 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99657 * 179.97438 * 10 9 8 13 13 C 1.39235 * 119.99759 * 183.99464 * 12 10 9 14 14 C 1.39482 * 119.83369 * 324.58907 * 13 12 10 15 15 C 1.36382 * 120.16748 * 180.29781 * 14 13 12 16 16 C 1.40867 * 119.82367 * 359.48246 * 15 14 13 17 17 C 1.41164 * 120.15873 * 180.24765 * 16 15 14 18 18 H 1.07999 * 119.99559 * 214.21417 * 17 16 15 19 19 C 1.39904 * 119.99968 * 34.21166 * 17 16 15 20 20 N 1.30870 * 120.00010 * 5.73219 * 19 17 16 21 21 Si 1.86794 * 120.00108 * 185.72880 * 19 17 16 22 22 H 1.48501 * 109.47053 * 89.99949 * 21 19 17 23 23 H 1.48493 * 109.47599 * 210.00467 * 21 19 17 24 24 H 1.48502 * 109.47193 * 330.00451 * 21 19 17 25 25 C 1.40868 * 119.67618 * 0.51632 * 16 15 14 26 26 C 1.36374 * 119.82605 * 359.73637 * 25 16 15 27 27 C 1.53001 * 109.47077 * 214.78363 * 4 3 2 28 28 C 1.52998 * 117.49967 * 123.87698 * 27 4 3 29 29 C 1.52995 * 117.50030 * 55.21406 * 27 4 3 30 30 H 1.09000 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47821 * 300.00013 * 1 2 3 32 32 H 1.09000 * 109.47067 * 60.00590 * 1 2 3 33 33 H 1.08991 * 109.47542 * 239.99821 * 2 1 3 34 34 H 1.09000 * 109.47067 * 119.99410 * 2 1 3 35 35 H 1.08994 * 109.47482 * 60.00109 * 9 8 6 36 36 H 1.09000 * 109.46981 * 299.99530 * 9 8 6 37 37 H 0.97000 * 119.99912 * 3.99581 * 12 10 9 38 38 H 1.07999 * 119.91466 * 0.02562 * 14 13 12 39 39 H 1.08002 * 120.08413 * 179.69736 * 15 14 13 40 40 H 0.97002 * 120.00565 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.08229 * 179.71097 * 25 16 15 42 42 H 1.07998 * 119.91230 * 180.02562 * 26 25 16 43 43 H 1.09000 * 115.54583 * 269.54533 * 27 4 3 44 44 H 1.08999 * 117.50290 * 359.97438 * 28 27 4 45 45 H 1.09004 * 117.49755 * 145.01901 * 28 27 4 46 46 H 1.09002 * 117.49814 * 214.97824 * 29 27 4 47 47 H 1.08996 * 117.50171 * 0.02562 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4261 1.4618 -0.1136 5 1 3.8952 0.5519 0.2609 6 6 3.7999 1.6612 -1.5597 7 8 2.9362 1.7915 -2.3946 8 8 5.0925 1.6939 -1.9205 9 6 5.3785 1.8887 -3.3307 10 6 6.8703 1.8972 -3.5440 11 8 7.6187 1.7527 -2.6007 12 7 7.3728 2.0643 -4.7834 13 6 8.7472 1.9891 -4.9933 14 6 9.6249 2.4691 -4.0213 15 6 10.9723 2.4044 -4.2225 16 6 11.4769 1.8411 -5.4109 17 6 12.8703 1.7658 -5.6242 18 1 13.2707 1.8769 -6.6210 19 6 13.7325 1.5474 -4.5442 20 7 13.2431 1.3012 -3.3557 21 14 15.5820 1.6069 -4.7988 22 1 16.0667 2.9941 -4.5845 23 1 16.2445 0.6960 -3.8311 24 1 15.9052 1.1781 -6.1833 25 6 10.5842 1.3585 -6.3880 26 6 9.2394 1.4348 -6.1748 27 6 3.9084 2.6593 0.7076 28 6 4.9698 2.3999 1.7786 29 6 3.5259 2.7005 2.1884 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5137 0.8900 35 1 4.9588 2.8397 -3.6585 36 1 4.9340 1.0774 -3.9070 37 1 6.7770 2.2370 -5.5291 38 1 9.2365 2.8970 -3.1090 39 1 11.6505 2.7809 -3.4711 40 1 13.8408 1.1493 -2.6069 41 1 10.9639 0.9297 -7.3035 42 1 8.5537 1.0649 -6.9227 43 1 3.9542 3.6081 0.1730 44 1 5.3242 1.3762 1.8985 45 1 5.7137 3.1783 1.9489 46 1 3.3205 3.6765 2.6281 47 1 2.9310 1.8744 2.5778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859872200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:32 Heat of formation + Delta-G solvation = -131.503983 kcal Electronic energy + Delta-G solvation = -29364.475311 eV Core-core repulsion = 25091.800245 eV Total energy + Delta-G solvation = -4272.675066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.03586 -41.15370 -39.64289 -39.00418 -37.73159 -37.26987 -36.19980 -34.76588 -32.48955 -31.65982 -31.30335 -30.21485 -28.73729 -26.54743 -24.06483 -23.45366 -23.18252 -23.09997 -22.67209 -21.72404 -21.33029 -19.36349 -19.24394 -18.97315 -18.07483 -17.87404 -17.65601 -17.37570 -17.00122 -16.57233 -16.13259 -15.96713 -15.72902 -15.65945 -15.07467 -14.88349 -14.49053 -14.30550 -14.06230 -13.95735 -13.77303 -13.62185 -13.45264 -13.39336 -13.03465 -12.84532 -12.68771 -12.47778 -12.40673 -12.33953 -12.22471 -12.02920 -11.98585 -11.80066 -11.68623 -11.36770 -11.24270 -11.21611 -10.87503 -10.71479 -10.52730 -9.47607 -8.81284 -8.54890 -6.32353 0.74165 0.88271 1.05176 1.11680 1.38829 1.40875 1.52948 1.66639 2.19290 2.23439 2.39261 2.79652 3.07708 3.39814 3.54127 3.62826 3.69870 3.71843 3.93308 3.98638 3.99283 4.10593 4.13041 4.20685 4.41293 4.42249 4.43184 4.46454 4.79349 4.81463 4.94640 4.97586 5.00349 5.06482 5.10683 5.11667 5.13637 5.24434 5.24789 5.29945 5.38428 5.68002 5.82252 5.87800 6.02660 6.10977 6.32856 6.47883 6.61528 6.68136 6.94506 6.98655 7.26693 8.41931 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.001931 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.357622 B =14494.229630 C =15536.502178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 O -0.362 6.362 4 C 0.139 3.861 5 H 0.120 0.880 6 C 0.445 3.555 7 O -0.516 6.516 8 O -0.340 6.340 9 C 0.057 3.943 10 C 0.500 3.500 11 O -0.555 6.555 12 N -0.635 5.635 13 C 0.015 3.985 14 C -0.104 4.104 15 C -0.167 4.167 16 C 0.073 3.927 17 C -0.498 4.498 18 H 0.081 0.919 19 C 0.025 3.975 20 N -0.844 5.844 21 Si 0.988 3.012 22 H -0.263 1.263 23 H -0.273 1.273 24 H -0.255 1.255 25 C -0.212 4.212 26 C -0.100 4.100 27 C -0.176 4.176 28 C -0.163 4.163 29 C -0.141 4.141 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.423 0.577 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.284 0.716 41 H 0.113 0.887 42 H 0.139 0.861 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.868 -1.154 7.429 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.035 4.035 3 O -0.280 6.280 4 C 0.080 3.920 5 H 0.138 0.862 6 C 0.288 3.712 7 O -0.404 6.404 8 O -0.256 6.256 9 C -0.019 4.019 10 C 0.287 3.713 11 O -0.432 6.432 12 N -0.282 5.282 13 C -0.078 4.078 14 C -0.124 4.124 15 C -0.187 4.187 16 C 0.070 3.930 17 C -0.528 4.528 18 H 0.099 0.901 19 C -0.187 4.187 20 N -0.471 5.471 21 Si 0.809 3.191 22 H -0.188 1.188 23 H -0.197 1.197 24 H -0.178 1.178 25 C -0.232 4.232 26 C -0.120 4.120 27 C -0.194 4.194 28 C -0.200 4.200 29 C -0.178 4.178 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.261 0.739 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.131 0.869 42 H 0.157 0.843 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.128 0.872 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.699 -1.131 8.078 23.182 hybrid contribution 0.878 -0.029 -0.631 1.082 sum -20.821 -1.160 7.447 22.143 Atomic orbital electron populations 1.21735 0.92139 1.03607 1.02885 1.22945 0.97185 0.82250 1.01129 1.88065 1.18324 1.28826 1.92813 1.21114 0.83883 1.01313 0.85741 0.86245 1.25036 0.79958 0.72422 0.93816 1.90657 1.50596 1.45614 1.53520 1.86592 1.28405 1.82454 1.28126 1.22744 0.91754 1.06775 0.80663 1.20629 0.90420 0.76981 0.83296 1.90758 1.61220 1.49022 1.42200 1.42614 1.05842 1.70027 1.09701 1.17251 0.82135 1.10476 0.97933 1.20620 0.93406 1.00283 0.98138 1.20916 0.93620 1.04119 1.00024 1.18057 0.94280 0.88861 0.91784 1.19784 0.91847 1.45787 0.95420 0.90091 1.26822 1.06286 0.91704 0.93937 1.69909 1.39183 1.36318 1.01722 0.85109 0.75516 0.79053 0.79415 1.18813 1.19739 1.17825 1.20945 0.93037 1.07665 1.01521 1.20455 0.95440 0.99541 0.96591 1.22010 1.07414 0.97468 0.92526 1.23185 0.92708 1.04121 0.99989 1.22991 0.97178 1.04625 0.92957 0.88884 0.91240 0.92982 0.93741 0.90534 0.85745 0.85632 0.73891 0.88410 0.88788 0.90595 0.86865 0.84321 0.87875 0.87582 0.87863 0.87210 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 71.98 0.74 -1.01 16 2 C 0.04 0.60 6.44 71.98 0.46 1.06 16 3 O -0.36 -7.27 9.34 -129.95 -1.21 -8.48 16 4 C 0.14 2.77 2.87 29.85 0.09 2.86 16 5 H 0.12 1.90 7.50 -2.38 -0.02 1.88 16 6 C 0.44 11.25 7.24 71.23 0.52 11.77 16 7 O -0.52 -14.87 16.26 28.38 0.46 -14.41 16 8 O -0.34 -9.49 9.75 -45.14 -0.44 -9.93 16 9 C 0.06 1.39 5.95 71.24 0.42 1.82 16 10 C 0.50 16.78 7.74 87.66 0.68 17.46 16 11 O -0.55 -24.81 13.94 15.78 0.22 -24.59 16 12 N -0.63 -20.03 5.30 -303.11 -1.61 -21.63 16 13 C 0.02 0.64 6.30 38.56 0.24 0.89 16 14 C -0.10 -5.27 8.61 22.14 0.19 -5.08 16 15 C -0.17 -9.27 8.57 22.48 0.19 -9.08 16 16 C 0.07 3.96 5.50 -21.27 -0.12 3.84 16 17 C -0.50 -27.08 9.03 23.39 0.21 -26.87 16 18 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 19 C 0.02 1.29 5.31 85.24 0.45 1.74 16 20 N -0.84 -46.83 10.96 21.82 0.24 -46.59 16 21 Si 0.99 39.45 29.56 68.60 2.03 41.48 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 23 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 24 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 25 C -0.21 -9.94 9.74 22.48 0.22 -9.72 16 26 C -0.10 -4.06 9.90 22.13 0.22 -3.84 16 27 C -0.18 -3.27 5.43 -10.80 -0.06 -3.32 16 28 C -0.16 -2.62 10.18 30.62 0.31 -2.31 16 29 C -0.14 -1.91 10.07 30.62 0.31 -1.60 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.12 2.42 8.13 -2.39 -0.02 2.40 16 36 H 0.13 2.42 8.13 -2.39 -0.02 2.40 16 37 H 0.42 9.05 8.82 -92.71 -0.82 8.24 16 38 H 0.10 5.05 6.24 -2.91 -0.02 5.03 16 39 H 0.09 5.60 6.46 -2.91 -0.02 5.58 16 40 H 0.28 14.42 8.30 -92.71 -0.77 13.65 16 41 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.10 2.11 8.07 -2.39 -0.02 2.09 16 44 H 0.11 1.57 8.03 -2.39 -0.02 1.55 16 45 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -74.95 404.37 4.94 -70.00 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.18 Total: 35.56 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 5.08 Total: -21.40 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -1.37 Total: -68.23 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -0.97 Total: -57.42 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -74.95 4.94 -70.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859872200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.500 kcal (2) G-P(sol) polarization free energy of solvation -74.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds