Wall clock time and date at job start Wed Apr 1 2020 05:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.47170 * 2 1 4 4 C 1.35907 * 117.00163 * 180.02562 * 3 2 1 5 5 C 1.38913 * 119.96461 * 359.71736 * 4 3 2 6 6 C 1.38306 * 120.29473 * 179.76327 * 5 4 3 7 7 C 1.37922 * 120.23545 * 0.51873 * 6 5 4 8 8 C 1.39879 * 119.93111 * 359.74368 * 7 6 5 9 9 C 1.47159 * 120.14441 * 180.02562 * 8 7 6 10 10 C 1.34973 * 119.99512 * 222.94257 * 9 8 7 11 11 C 1.46227 * 120.00424 * 10.71175 * 10 9 8 12 12 O 1.21758 * 119.99717 * 6.68658 * 11 10 9 13 13 N 1.34775 * 120.00072 * 186.69096 * 11 10 9 14 14 C 1.36707 * 120.00176 * 359.97438 * 13 11 10 15 15 H 1.08002 * 120.00015 * 324.60108 * 14 13 11 16 16 C 1.39129 * 120.00077 * 144.60558 * 14 13 11 17 17 N 1.31318 * 119.99855 * 160.63149 * 16 14 13 18 18 Si 1.86803 * 119.99890 * 340.62473 * 16 14 13 19 19 H 1.48489 * 109.47129 * 92.09239 * 18 16 14 20 20 H 1.48498 * 109.46920 * 212.09513 * 18 16 14 21 21 H 1.48497 * 109.46907 * 332.09161 * 18 16 14 22 22 C 1.46504 * 119.99786 * 180.02562 * 13 11 10 23 23 C 1.53005 * 109.47162 * 85.67774 * 22 13 11 24 24 C 1.50700 * 109.46836 * 179.97438 * 23 22 13 25 25 O 1.20823 * 120.00531 * 359.97438 * 24 23 22 26 26 O 1.34234 * 119.99458 * 179.97438 * 24 23 22 27 27 C 1.45203 * 116.99619 * 179.97438 * 26 24 23 28 28 C 1.38361 * 119.97440 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.46675 * 60.00292 * 1 2 3 30 30 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46949 * 300.00357 * 1 2 3 32 32 H 1.08995 * 109.46977 * 239.99594 * 2 1 3 33 33 H 1.09004 * 109.46951 * 119.99794 * 2 1 3 34 34 H 1.07996 * 119.85864 * 0.02794 * 5 4 3 35 35 H 1.08004 * 119.88345 * 180.25889 * 6 5 4 36 36 H 1.08000 * 120.03703 * 179.76325 * 7 6 5 37 37 H 1.07996 * 120.00103 * 42.93112 * 9 8 7 38 38 H 1.08000 * 119.99696 * 190.72124 * 10 9 8 39 39 H 0.97000 * 120.00168 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47284 * 205.67691 * 22 13 11 41 41 H 1.08996 * 109.47494 * 325.67635 * 22 13 11 42 42 H 1.09002 * 109.46933 * 299.99576 * 23 22 13 43 43 H 1.08996 * 109.47029 * 59.99577 * 23 22 13 44 44 H 1.09003 * 109.47185 * 299.99933 * 27 26 24 45 45 H 1.09005 * 109.47129 * 60.00073 * 27 26 24 46 46 H 1.09004 * 109.46935 * 180.02562 * 27 26 24 47 47 H 1.08004 * 120.11455 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3538 1.5253 -0.0005 5 6 4.1993 0.4232 0.0049 6 6 5.5715 0.5965 -0.0006 7 6 6.1112 1.8657 -0.0006 8 6 5.2687 2.9824 -0.0006 9 6 5.8396 4.3388 -0.0013 10 6 5.3129 5.2929 0.7951 11 6 4.3380 4.9311 1.8231 12 8 4.0919 3.7592 2.0432 13 7 3.7117 5.8950 2.5268 14 6 3.9883 7.2108 2.2800 15 1 4.9910 7.5111 2.0136 16 6 2.9782 8.1631 2.3720 17 7 3.2835 9.4323 2.5153 18 14 1.1878 7.6364 2.2913 19 1 0.6812 7.3926 3.6656 20 1 0.3848 8.7088 1.6507 21 1 1.0743 6.3892 1.4933 22 6 2.7353 5.5325 3.5572 23 6 3.4619 5.2657 4.8770 24 6 2.4574 4.8935 5.9370 25 8 1.2811 4.8468 5.6649 26 8 2.8696 4.6138 7.1835 27 6 1.8469 4.2636 8.1529 28 6 3.8820 2.8041 -0.0011 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.7835 -0.5735 0.0090 35 1 6.2227 -0.2651 -0.0005 36 1 7.1831 1.9974 -0.0010 37 1 6.6799 4.5707 -0.6387 38 1 5.6115 6.3235 0.6728 39 1 2.5793 10.0963 2.5791 40 1 2.0276 6.3505 3.6910 41 1 2.1990 4.6347 3.2498 42 1 4.1696 4.4476 4.7433 43 1 3.9982 6.1635 5.1844 44 1 1.1448 5.0911 8.2554 45 1 1.3143 3.3749 7.8142 46 1 2.3139 4.0624 9.1171 47 1 3.2254 3.6617 -0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871345716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:52 Heat of formation + Delta-G solvation = -89.215084 kcal Electronic energy + Delta-G solvation = -31097.783533 eV Core-core repulsion = 26826.942251 eV Total energy + Delta-G solvation = -4270.841282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.24805 -39.84515 -38.96044 -37.26265 -36.33056 -35.22544 -33.09399 -32.28903 -31.84439 -31.11721 -29.37082 -28.89851 -27.62814 -25.08446 -24.79436 -23.73818 -22.48731 -21.71715 -20.68772 -20.17383 -18.78800 -17.88694 -17.45686 -16.59092 -16.40884 -16.23819 -16.06802 -15.90255 -15.79970 -15.45754 -15.10516 -14.27141 -14.12564 -13.84677 -13.51638 -13.25910 -13.23967 -13.16553 -12.85212 -12.72741 -12.56444 -12.50782 -12.28921 -12.16802 -11.91556 -11.80317 -11.68404 -11.42721 -11.22279 -11.12324 -10.79350 -10.65961 -10.62550 -10.43404 -10.24347 -10.18100 -9.85227 -9.43539 -9.20811 -8.75304 -8.05512 -7.68423 -7.46604 -6.59606 -4.16810 1.26565 1.97161 2.40560 2.50261 2.91602 3.09371 3.21963 3.29945 3.48707 4.04799 4.17436 4.29327 4.37347 4.88221 4.93648 4.97771 5.12575 5.16117 5.16323 5.22428 5.22497 5.25574 5.42234 5.49880 5.50785 5.51398 5.63609 5.66921 5.73325 5.78067 5.90363 6.00681 6.01861 6.05941 6.16325 6.28369 6.45848 6.49282 6.62410 6.67680 6.75800 6.79351 6.92722 7.09333 7.18476 7.28747 7.83397 7.93224 8.00450 8.12050 8.83391 9.23305 9.57616 10.49689 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.007905 B = 0.004154 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.307178 B = 6738.340319 C = 7916.292640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.317 6.317 4 C 0.110 3.890 5 C -0.208 4.208 6 C -0.103 4.103 7 C -0.144 4.144 8 C -0.009 4.009 9 C -0.090 4.090 10 C -0.142 4.142 11 C 0.490 3.510 12 O -0.578 6.578 13 N -0.447 5.447 14 C -0.349 4.349 15 H 0.112 0.888 16 C 0.069 3.931 17 N -0.853 5.853 18 Si 0.872 3.128 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.259 1.259 22 C 0.110 3.890 23 C -0.122 4.122 24 C 0.467 3.533 25 O -0.510 6.510 26 O -0.362 6.362 27 C 0.035 3.965 28 C -0.055 4.055 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.278 0.722 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 -13.309 -0.283 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.232 6.232 4 C 0.066 3.934 5 C -0.227 4.227 6 C -0.121 4.121 7 C -0.163 4.163 8 C -0.010 4.010 9 C -0.110 4.110 10 C -0.163 4.163 11 C 0.283 3.717 12 O -0.464 6.464 13 N -0.165 5.165 14 C -0.476 4.476 15 H 0.129 0.871 16 C -0.140 4.140 17 N -0.487 5.487 18 Si 0.699 3.301 19 H -0.194 1.194 20 H -0.214 1.214 21 H -0.183 1.183 22 C -0.013 4.013 23 C -0.160 4.160 24 C 0.310 3.690 25 O -0.398 6.398 26 O -0.279 6.279 27 C -0.059 4.059 28 C -0.074 4.074 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.132 0.868 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.209 -13.507 -0.177 13.510 hybrid contribution -1.047 -0.121 0.364 1.115 sum -0.838 -13.628 0.188 13.655 Atomic orbital electron populations 1.21766 0.93211 1.02347 1.03590 1.22649 0.95528 0.82808 1.00799 1.86087 1.19597 1.28249 1.89243 1.18730 0.81797 0.94046 0.98830 1.21089 0.94443 0.97209 1.09913 1.20582 0.94000 0.96803 1.00702 1.21016 0.98903 0.91848 1.04497 1.18602 0.91960 0.92971 0.97423 1.22137 0.98473 0.91413 0.99008 1.23285 0.97330 0.99895 0.95768 1.18368 0.84667 0.85112 0.83585 1.90788 1.67699 1.17889 1.69989 1.43697 1.37038 1.06741 1.29054 1.19140 0.97719 0.79950 1.50820 0.87077 1.25347 0.98926 0.94857 0.94821 1.69676 1.34659 1.01168 1.43193 0.87057 0.84692 0.79236 0.79087 1.19393 1.21398 1.18288 1.21497 0.91862 1.01755 0.86191 1.21782 0.97568 1.04966 0.91723 1.24010 0.89768 0.72750 0.82432 1.90646 1.19491 1.48351 1.81311 1.86538 1.40863 1.79599 1.20913 1.23204 0.91235 1.00874 0.90615 1.20367 0.94127 0.94335 0.98605 0.91648 0.90771 0.91489 0.92591 0.92487 0.86622 0.86701 0.86510 0.85335 0.84313 0.91187 0.90395 0.90187 0.87299 0.86821 0.92077 0.92112 0.88407 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 37.16 0.38 -1.23 16 2 C 0.06 0.73 5.46 37.16 0.20 0.94 16 3 O -0.32 -5.60 10.13 -19.45 -0.20 -5.79 16 4 C 0.11 2.01 6.68 -39.29 -0.26 1.75 16 5 C -0.21 -3.21 9.04 -39.31 -0.36 -3.57 16 6 C -0.10 -1.49 10.02 -39.67 -0.40 -1.89 16 7 C -0.14 -2.23 9.79 -39.08 -0.38 -2.61 16 8 C -0.01 -0.16 4.58 -105.07 -0.48 -0.65 16 9 C -0.09 -1.48 9.82 -37.12 -0.36 -1.85 16 10 C -0.14 -2.70 9.19 -37.53 -0.34 -3.05 16 11 C 0.49 10.88 6.56 -13.05 -0.09 10.79 16 12 O -0.58 -13.51 11.70 5.14 0.06 -13.45 16 13 N -0.45 -10.34 2.23 -116.46 -0.26 -10.60 16 14 C -0.35 -8.59 9.05 -15.05 -0.14 -8.72 16 15 H 0.11 2.78 6.73 -52.49 -0.35 2.43 16 16 C 0.07 1.77 5.35 -17.44 -0.09 1.67 16 17 N -0.85 -22.63 13.95 55.51 0.77 -21.86 16 18 Si 0.87 20.77 24.86 -169.99 -4.23 16.54 16 19 H -0.27 -6.39 6.56 56.52 0.37 -6.02 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.26 -6.34 7.11 56.52 0.40 -5.93 16 22 C 0.11 2.48 3.27 -4.04 -0.01 2.47 16 23 C -0.12 -2.34 6.11 -27.88 -0.17 -2.51 16 24 C 0.47 8.79 7.96 36.01 0.29 9.08 16 25 O -0.51 -10.84 15.73 -18.75 -0.29 -11.14 16 26 O -0.36 -5.82 10.57 -39.27 -0.41 -6.23 16 27 C 0.03 0.42 10.56 101.05 1.07 1.49 16 28 C -0.06 -1.09 6.49 -38.95 -0.25 -1.34 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 33 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 34 H 0.12 1.48 6.28 -52.49 -0.33 1.15 16 35 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 36 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.14 2.53 6.42 -52.49 -0.34 2.20 16 39 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.08 1.86 2.83 -51.93 -0.15 1.71 16 41 H 0.08 1.88 7.51 -51.93 -0.39 1.49 16 42 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 43 H 0.11 2.11 8.14 -51.93 -0.42 1.68 16 44 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 45 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 46 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.12 2.64 6.93 -52.48 -0.36 2.28 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -30.90 389.77 -6.62 -37.52 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.53 Total: 8.37 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.40 Total: 0.76 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.51 Total: -32.46 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.85 Total: -36.61 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.23 Total: 16.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.90 -6.62 -37.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871345716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.699 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds