Wall clock time and date at job start Wed Apr 1 2020 05:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.47170 * 2 1 4 4 C 1.35907 * 117.00163 * 180.02562 * 3 2 1 5 5 C 1.38913 * 119.96461 * 359.71736 * 4 3 2 6 6 C 1.38306 * 120.29473 * 179.76327 * 5 4 3 7 7 C 1.37922 * 120.23545 * 0.51873 * 6 5 4 8 8 C 1.39879 * 119.93111 * 359.74368 * 7 6 5 9 9 C 1.47159 * 120.14441 * 180.02562 * 8 7 6 10 10 C 1.34973 * 119.99512 * 222.94257 * 9 8 7 11 11 C 1.46227 * 120.00424 * 10.71175 * 10 9 8 12 12 O 1.21758 * 119.99717 * 6.68658 * 11 10 9 13 13 N 1.34775 * 120.00072 * 186.69096 * 11 10 9 14 14 C 1.36707 * 120.00176 * 359.97438 * 13 11 10 15 15 H 1.08002 * 120.00015 * 324.60108 * 14 13 11 16 16 C 1.39129 * 120.00077 * 144.60558 * 14 13 11 17 17 N 1.31318 * 119.99855 * 160.63149 * 16 14 13 18 18 Si 1.86803 * 119.99890 * 340.62473 * 16 14 13 19 19 H 1.48489 * 109.47129 * 92.09239 * 18 16 14 20 20 H 1.48498 * 109.46920 * 212.09513 * 18 16 14 21 21 H 1.48497 * 109.46907 * 332.09161 * 18 16 14 22 22 C 1.46504 * 119.99786 * 180.02562 * 13 11 10 23 23 C 1.53005 * 109.47162 * 85.67774 * 22 13 11 24 24 C 1.50700 * 109.46836 * 179.97438 * 23 22 13 25 25 O 1.20823 * 120.00531 * 359.97438 * 24 23 22 26 26 O 1.34234 * 119.99458 * 179.97438 * 24 23 22 27 27 C 1.45203 * 116.99619 * 179.97438 * 26 24 23 28 28 C 1.38361 * 119.97440 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.46675 * 60.00292 * 1 2 3 30 30 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46949 * 300.00357 * 1 2 3 32 32 H 1.08995 * 109.46977 * 239.99594 * 2 1 3 33 33 H 1.09004 * 109.46951 * 119.99794 * 2 1 3 34 34 H 1.07996 * 119.85864 * 0.02794 * 5 4 3 35 35 H 1.08004 * 119.88345 * 180.25889 * 6 5 4 36 36 H 1.08000 * 120.03703 * 179.76325 * 7 6 5 37 37 H 1.07996 * 120.00103 * 42.93112 * 9 8 7 38 38 H 1.08000 * 119.99696 * 190.72124 * 10 9 8 39 39 H 0.97000 * 120.00168 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.47284 * 205.67691 * 22 13 11 41 41 H 1.08996 * 109.47494 * 325.67635 * 22 13 11 42 42 H 1.09002 * 109.46933 * 299.99576 * 23 22 13 43 43 H 1.08996 * 109.47029 * 59.99577 * 23 22 13 44 44 H 1.09003 * 109.47185 * 299.99933 * 27 26 24 45 45 H 1.09005 * 109.47129 * 60.00073 * 27 26 24 46 46 H 1.09004 * 109.46935 * 180.02562 * 27 26 24 47 47 H 1.08004 * 120.11455 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3538 1.5253 -0.0005 5 6 4.1993 0.4232 0.0049 6 6 5.5715 0.5965 -0.0006 7 6 6.1112 1.8657 -0.0006 8 6 5.2687 2.9824 -0.0006 9 6 5.8396 4.3388 -0.0013 10 6 5.3129 5.2929 0.7951 11 6 4.3380 4.9311 1.8231 12 8 4.0919 3.7592 2.0432 13 7 3.7117 5.8950 2.5268 14 6 3.9883 7.2108 2.2800 15 1 4.9910 7.5111 2.0136 16 6 2.9782 8.1631 2.3720 17 7 3.2835 9.4323 2.5153 18 14 1.1878 7.6364 2.2913 19 1 0.6812 7.3926 3.6656 20 1 0.3848 8.7088 1.6507 21 1 1.0743 6.3892 1.4933 22 6 2.7353 5.5325 3.5572 23 6 3.4619 5.2657 4.8770 24 6 2.4574 4.8935 5.9370 25 8 1.2811 4.8468 5.6649 26 8 2.8696 4.6138 7.1835 27 6 1.8469 4.2636 8.1529 28 6 3.8820 2.8041 -0.0011 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.7835 -0.5735 0.0090 35 1 6.2227 -0.2651 -0.0005 36 1 7.1831 1.9974 -0.0010 37 1 6.6799 4.5707 -0.6387 38 1 5.6115 6.3235 0.6728 39 1 2.5793 10.0963 2.5791 40 1 2.0276 6.3505 3.6910 41 1 2.1990 4.6347 3.2498 42 1 4.1696 4.4476 4.7433 43 1 3.9982 6.1635 5.1844 44 1 1.1448 5.0911 8.2554 45 1 1.3143 3.3749 7.8142 46 1 2.3139 4.0624 9.1171 47 1 3.2254 3.6617 -0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871345716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:51 Heat of formation + Delta-G solvation = -106.606196 kcal Electronic energy + Delta-G solvation = -31098.537668 eV Core-core repulsion = 26826.942251 eV Total energy + Delta-G solvation = -4271.595417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.73755 -41.20503 -40.52024 -38.58544 -37.74858 -36.94278 -34.60650 -34.09728 -32.86960 -32.76856 -30.65511 -30.18384 -28.80929 -26.93790 -26.30337 -24.94002 -23.77821 -23.00697 -22.08535 -21.69439 -20.44791 -19.33185 -18.94384 -18.29207 -17.89021 -17.73882 -17.54533 -17.08044 -16.99862 -16.92464 -16.59547 -15.91619 -15.67986 -15.39089 -14.87847 -14.72109 -14.58732 -14.47890 -14.30889 -14.14843 -13.92351 -13.83201 -13.80903 -13.47511 -13.35961 -13.09233 -12.99070 -12.85371 -12.73211 -12.50147 -12.38150 -12.09076 -11.91557 -11.81180 -11.74463 -11.67769 -11.59513 -11.17435 -10.74120 -10.44635 -9.86282 -8.97875 -8.92400 -8.57412 -6.13314 -0.11262 0.69499 1.00072 1.02591 1.16366 1.25417 1.33858 1.56737 2.09294 2.34271 2.44966 2.71216 2.99672 3.02128 3.65794 3.78090 3.89769 3.96781 4.01210 4.02600 4.15803 4.20495 4.23680 4.24954 4.25961 4.33695 4.34741 4.48139 4.52038 4.57879 4.62624 4.68092 4.76617 4.82052 4.85567 4.87415 5.14212 5.18225 5.20257 5.28882 5.33565 5.42890 5.52215 5.63988 5.78861 6.00675 6.05828 6.20434 6.56530 6.61463 6.91375 7.39791 7.77390 8.55877 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.007905 B = 0.004154 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.307178 B = 6738.340319 C = 7916.292640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.350 6.350 4 C 0.091 3.909 5 C -0.205 4.205 6 C -0.096 4.096 7 C -0.140 4.140 8 C -0.035 4.035 9 C -0.048 4.048 10 C -0.183 4.183 11 C 0.494 3.506 12 O -0.590 6.590 13 N -0.465 5.465 14 C -0.335 4.335 15 H 0.106 0.894 16 C 0.042 3.958 17 N -0.885 5.885 18 Si 0.908 3.092 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.279 1.279 22 C 0.113 3.887 23 C -0.113 4.113 24 C 0.473 3.527 25 O -0.541 6.541 26 O -0.359 6.359 27 C 0.025 3.975 28 C -0.088 4.088 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.144 0.856 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.175 0.825 38 H 0.143 0.857 39 H 0.280 0.720 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.140 0.860 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.889 -16.244 -0.327 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.265 6.265 4 C 0.046 3.954 5 C -0.224 4.224 6 C -0.114 4.114 7 C -0.159 4.159 8 C -0.035 4.035 9 C -0.068 4.068 10 C -0.203 4.203 11 C 0.287 3.713 12 O -0.476 6.476 13 N -0.184 5.184 14 C -0.462 4.462 15 H 0.123 0.877 16 C -0.163 4.163 17 N -0.521 5.521 18 Si 0.736 3.264 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.204 1.204 22 C -0.011 4.011 23 C -0.152 4.152 24 C 0.318 3.682 25 O -0.431 6.431 26 O -0.275 6.275 27 C -0.067 4.067 28 C -0.107 4.107 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.162 0.838 35 H 0.174 0.826 36 H 0.168 0.832 37 H 0.192 0.808 38 H 0.161 0.839 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.134 0.866 43 H 0.140 0.860 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.158 0.842 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.153 -16.458 -0.211 16.600 hybrid contribution -1.609 0.457 0.328 1.704 sum 0.544 -16.001 0.117 16.011 Atomic orbital electron populations 1.21817 0.91975 1.04240 1.02617 1.23001 0.96620 0.80984 1.02068 1.86060 1.19767 1.31335 1.89378 1.18973 0.82514 0.94460 0.99413 1.21461 0.94862 0.97569 1.08459 1.21113 0.94025 0.97911 0.98342 1.21417 1.00263 0.91331 1.02840 1.18872 0.91569 0.94423 0.98624 1.22658 0.97406 0.90163 0.96588 1.23169 0.98851 1.00943 0.97350 1.18949 0.84134 0.84677 0.83530 1.90777 1.68016 1.18434 1.70396 1.43752 1.37947 1.06447 1.30295 1.19087 0.97223 0.80430 1.49479 0.87662 1.25617 1.00217 0.94969 0.95503 1.69697 1.35154 1.01606 1.45690 0.86506 0.83470 0.78029 0.78348 1.19888 1.20716 1.20392 1.21330 0.91911 1.00037 0.87788 1.21606 0.97408 1.05585 0.90596 1.23793 0.88930 0.72193 0.83316 1.90635 1.20572 1.49875 1.82018 1.86511 1.42004 1.78925 1.20088 1.23624 0.91129 1.00906 0.91083 1.20273 0.94850 0.94009 1.01541 0.91956 0.87369 0.93142 0.90424 0.91821 0.83808 0.82598 0.83208 0.80821 0.83907 0.90930 0.91950 0.92224 0.86615 0.86029 0.92076 0.91940 0.84239 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 10.28 71.98 0.74 -2.31 16 2 C 0.05 1.16 5.46 71.98 0.39 1.55 16 3 O -0.35 -12.63 10.13 -92.50 -0.94 -13.57 16 4 C 0.09 3.30 6.68 22.46 0.15 3.45 16 5 C -0.20 -5.80 9.04 22.45 0.20 -5.59 16 6 C -0.10 -2.38 10.02 22.21 0.22 -2.16 16 7 C -0.14 -3.81 9.79 22.59 0.22 -3.59 16 8 C -0.03 -1.18 4.58 -20.16 -0.09 -1.27 16 9 C -0.05 -1.51 9.82 23.86 0.23 -1.28 16 10 C -0.18 -6.97 9.19 23.60 0.22 -6.75 16 11 C 0.49 22.56 6.56 86.32 0.57 23.13 16 12 O -0.59 -28.41 11.70 -4.54 -0.05 -28.46 16 13 N -0.46 -22.30 2.23 -640.56 -1.43 -23.73 16 14 C -0.33 -16.97 9.05 84.15 0.76 -16.21 16 15 H 0.11 5.40 6.73 -2.91 -0.02 5.38 16 16 C 0.04 2.23 5.35 84.98 0.45 2.68 16 17 N -0.88 -48.06 13.95 21.69 0.30 -47.76 16 18 Si 0.91 44.67 24.86 68.60 1.71 46.38 16 19 H -0.27 -13.43 6.56 99.48 0.65 -12.77 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 21 H -0.28 -14.41 7.11 99.48 0.71 -13.71 16 22 C 0.11 5.30 3.27 86.38 0.28 5.58 16 23 C -0.11 -4.45 6.11 29.85 0.18 -4.27 16 24 C 0.47 17.94 7.96 71.24 0.57 18.51 16 25 O -0.54 -23.50 15.73 21.97 0.35 -23.15 16 26 O -0.36 -11.15 10.57 -51.45 -0.54 -11.69 16 27 C 0.03 0.57 10.56 113.37 1.20 1.77 16 28 C -0.09 -3.51 6.49 22.68 0.15 -3.36 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.08 1.52 7.67 -2.39 -0.02 1.50 16 33 H 0.06 1.44 7.65 -2.38 -0.02 1.42 16 34 H 0.14 3.15 6.28 -2.91 -0.02 3.14 16 35 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 38 H 0.14 5.27 6.42 -2.91 -0.02 5.25 16 39 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.06 3.11 2.83 -2.39 -0.01 3.11 16 41 H 0.06 2.98 7.51 -2.39 -0.02 2.96 16 42 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 43 H 0.12 4.56 8.14 -2.39 -0.02 4.54 16 44 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 45 H 0.06 1.40 8.13 -2.38 -0.02 1.38 16 46 H 0.14 1.96 8.14 -2.38 -0.02 1.95 16 47 H 0.08 3.86 6.93 -2.91 -0.02 3.84 16 Total: -1.00 -70.96 389.77 6.77 -64.19 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.93 Total: 27.92 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 6.45 Total: 9.87 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.13 Total: -71.49 kcal Atomic # 8 Polarization: -75.68 SS G_CDS: -1.19 Total: -76.87 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.71 Total: 46.38 kcal Total: -70.96 6.77 -64.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871345716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.417 kcal (2) G-P(sol) polarization free energy of solvation -70.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds