Wall clock time and date at job start Wed Apr 1 2020 05:47:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 O 1.42907 * 109.47079 * 2 1
4 4 C 1.42899 * 113.99940 * 180.02562 * 3 2 1
5 5 H 1.08995 * 115.54842 * 355.67084 * 4 3 2
6 6 C 1.53000 * 117.49948 * 141.38473 * 4 3 2
7 7 C 1.52993 * 60.00106 * 107.48499 * 6 4 3
8 8 H 1.09004 * 117.51530 * 107.48111 * 7 6 4
9 9 C 1.50696 * 117.50183 * 252.50721 * 7 6 4
10 10 O 1.20832 * 120.00129 * 68.62243 * 9 7 6
11 11 O 1.34232 * 120.00392 * 248.62801 * 9 7 6
12 12 C 1.45196 * 117.00426 * 179.97438 * 11 9 7
13 13 C 1.50696 * 109.47322 * 179.97438 * 12 11 9
14 14 O 1.21285 * 120.00152 * 5.12671 * 13 12 11
15 15 N 1.34779 * 119.99773 * 185.12933 * 13 12 11
16 16 C 1.46505 * 119.99560 * 185.22292 * 15 13 12
17 17 C 1.50697 * 109.47508 * 89.99993 * 16 15 13
18 18 H 1.08007 * 119.99778 * 359.97438 * 17 16 15
19 19 C 1.37875 * 120.00251 * 179.97438 * 17 16 15
20 20 N 1.31514 * 119.99756 * 179.97438 * 19 17 16
21 21 Si 1.86797 * 120.00045 * 359.97438 * 19 17 16
22 22 H 1.48497 * 109.47186 * 89.99872 * 21 19 17
23 23 H 1.48497 * 109.47283 * 210.00067 * 21 19 17
24 24 H 1.48500 * 109.46907 * 330.00348 * 21 19 17
25 25 C 1.39920 * 120.00161 * 5.21613 * 15 13 12
26 26 C 1.38872 * 120.07264 * 292.47423 * 25 15 13
27 27 C 1.38111 * 119.92796 * 179.79015 * 26 25 15
28 28 C 1.38288 * 120.06933 * 0.49136 * 27 26 25
29 29 C 1.38282 * 120.14230 * 359.73923 * 28 27 26
30 30 C 1.38109 * 120.06764 * 0.02709 * 29 28 27
31 31 H 1.08993 * 109.47069 * 180.02562 * 1 2 3
32 32 H 1.08996 * 109.47080 * 59.99562 * 1 2 3
33 33 H 1.09007 * 109.46591 * 299.99728 * 1 2 3
34 34 H 1.08991 * 109.47733 * 120.00145 * 2 1 3
35 35 H 1.09002 * 109.46848 * 240.00660 * 2 1 3
36 36 H 1.08999 * 117.49499 * 214.98142 * 6 4 3
37 37 H 1.08998 * 117.49641 * 359.97438 * 6 4 3
38 38 H 1.09004 * 109.47162 * 300.00325 * 12 11 9
39 39 H 1.09007 * 109.47126 * 60.00007 * 12 11 9
40 40 H 1.09004 * 109.46723 * 209.99732 * 16 15 13
41 41 H 1.08994 * 109.47106 * 329.99441 * 16 15 13
42 42 H 0.97009 * 119.99332 * 180.02562 * 20 19 17
43 43 H 1.07993 * 120.03589 * 0.02765 * 26 25 15
44 44 H 1.07994 * 119.96837 * 180.23307 * 27 26 25
45 45 H 1.08000 * 119.92741 * 179.76676 * 28 27 26
46 46 H 1.07997 * 119.96566 * 179.97438 * 29 28 27
47 47 H 1.08000 * 120.03039 * 179.97438 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4309 1.4602 -0.0006
5 1 3.9770 0.5198 0.0733
6 6 4.0511 2.5732 -0.8477
7 6 4.0426 2.6875 0.6780
8 1 4.9912 2.5545 1.1982
9 6 3.0967 3.6848 1.2958
10 8 1.9039 3.4988 1.2436
11 8 3.5792 4.7798 1.9041
12 6 2.6100 5.6971 2.4763
13 6 3.3311 6.8576 3.1121
14 8 4.5353 6.9552 3.0055
15 7 2.6379 7.7869 3.7993
16 6 3.3210 8.9740 4.3195
17 6 3.2792 10.0707 3.2868
18 1 2.7929 9.9004 2.3376
19 6 3.8619 11.2914 3.5537
20 7 3.8258 12.2483 2.6522
21 14 4.7024 11.5863 5.1956
22 1 6.1339 11.2047 5.0945
23 1 4.5974 13.0234 5.5545
24 1 4.0441 10.7650 6.2432
25 6 1.2659 7.6181 4.0157
26 6 0.3806 7.6754 2.9472
27 6 -0.9726 7.5041 3.1636
28 6 -1.4474 7.2857 4.4439
29 6 -0.5690 7.2328 5.5106
30 6 0.7859 7.3986 5.3002
31 1 -0.3633 -1.0276 0.0005
32 1 -0.3633 0.5139 -0.8899
33 1 -0.3633 0.5138 0.8901
34 1 1.8934 -0.5138 0.8899
35 1 1.8933 -0.5137 -0.8901
36 1 5.0053 2.3650 -1.3315
37 1 3.3725 3.2190 -1.4048
38 1 1.9502 6.0652 1.6906
39 1 2.0205 5.1780 3.2321
40 1 2.8220 9.3113 5.2281
41 1 4.3582 8.7266 4.5452
42 1 4.2361 13.1071 2.8398
43 1 0.7504 7.8500 1.9476
44 1 -1.6612 7.5448 2.3326
45 1 -2.5064 7.1558 4.6110
46 1 -0.9429 7.0625 6.5094
47 1 1.4713 7.3576 6.1338
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000917304858.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:47:57
Heat of formation + Delta-G solvation = -89.960110 kcal
Electronic energy + Delta-G solvation = -30319.352431 eV
Core-core repulsion = 26048.478842 eV
Total energy + Delta-G solvation = -4270.873589 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-40.69744 -39.93314 -38.69347 -38.08743 -36.32822 -35.35699 -34.96871 -32.67267
-31.04750 -30.83497 -29.89795 -29.15376 -27.26543 -24.90251 -23.15065 -22.71211
-22.55519 -22.44251 -21.97257 -20.38459 -19.21669 -18.27303 -17.40771 -17.01784
-16.84858 -16.47451 -16.07212 -15.79215 -15.65329 -15.62938 -15.13561 -14.91441
-14.34224 -14.15222 -14.01673 -13.57771 -13.28069 -13.21792 -12.91304 -12.81114
-12.64453 -12.50215 -12.43449 -12.37796 -12.18552 -11.84587 -11.49155 -11.38109
-11.28974 -11.17082 -10.89131 -10.85215 -10.60266 -10.57590 -10.34253 -10.25137
-9.62305 -9.54923 -9.43489 -8.75350 -8.69162 -8.60882 -7.81526 -6.12598
-4.12422 1.47495 1.58586 2.13418 2.39832 3.02823 3.15469 3.26986
3.32524 3.34280 3.48179 3.65336 3.95557 4.35909 4.40348 4.43355
4.59510 4.71197 4.79386 4.87091 5.02869 5.07001 5.07268 5.09820
5.13611 5.20371 5.24088 5.27009 5.33444 5.40310 5.47074 5.61535
5.65081 5.66424 5.75529 5.90140 5.93004 6.19566 6.43041 6.52749
6.61276 6.67691 6.68816 6.84797 6.95581 7.00305 7.22188 7.51942
7.84801 8.05120 8.38831 8.67580 8.89409 9.45854 11.00498
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.011815 B = 0.002887 C = 0.002473
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2369.265587 B = 9695.812813 C =11318.150864
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.055 3.945
3 O -0.328 6.328
4 C 0.052 3.948
5 H 0.124 0.876
6 C -0.155 4.155
7 C -0.169 4.169
8 H 0.142 0.858
9 C 0.485 3.515
10 O -0.482 6.482
11 O -0.331 6.331
12 C 0.054 3.946
13 C 0.520 3.480
14 O -0.505 6.505
15 N -0.551 5.551
16 C 0.219 3.781
17 C -0.532 4.532
18 H 0.076 0.924
19 C 0.075 3.925
20 N -0.894 5.894
21 Si 0.875 3.125
22 H -0.272 1.272
23 H -0.283 1.283
24 H -0.265 1.265
25 C 0.151 3.849
26 C -0.121 4.121
27 C -0.106 4.106
28 C -0.129 4.129
29 C -0.110 4.110
30 C -0.124 4.124
31 H 0.069 0.931
32 H 0.063 0.937
33 H 0.066 0.934
34 H 0.049 0.951
35 H 0.049 0.951
36 H 0.118 0.882
37 H 0.109 0.891
38 H 0.100 0.900
39 H 0.094 0.906
40 H 0.036 0.964
41 H 0.044 0.956
42 H 0.266 0.734
43 H 0.126 0.874
44 H 0.124 0.876
45 H 0.120 0.880
46 H 0.123 0.877
47 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.029 -23.608 -1.953 24.709
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.021 4.021
3 O -0.246 6.246
4 C -0.007 4.007
5 H 0.142 0.858
6 C -0.192 4.192
7 C -0.188 4.188
8 H 0.160 0.840
9 C 0.326 3.674
10 O -0.368 6.368
11 O -0.247 6.247
12 C -0.023 4.023
13 C 0.306 3.694
14 O -0.379 6.379
15 N -0.280 5.280
16 C 0.100 3.900
17 C -0.570 4.570
18 H 0.094 0.906
19 C -0.128 4.128
20 N -0.532 5.532
21 Si 0.701 3.299
22 H -0.197 1.197
23 H -0.209 1.209
24 H -0.190 1.190
25 C 0.059 3.941
26 C -0.140 4.140
27 C -0.124 4.124
28 C -0.148 4.148
29 C -0.128 4.128
30 C -0.144 4.144
31 H 0.088 0.912
32 H 0.082 0.918
33 H 0.085 0.915
34 H 0.067 0.933
35 H 0.067 0.933
36 H 0.136 0.864
37 H 0.128 0.872
38 H 0.118 0.882
39 H 0.112 0.888
40 H 0.054 0.946
41 H 0.062 0.938
42 H 0.076 0.924
43 H 0.143 0.857
44 H 0.142 0.858
45 H 0.138 0.862
46 H 0.141 0.859
47 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -6.763 -23.209 -2.044 24.260
hybrid contribution 0.460 0.456 0.842 1.062
sum -6.303 -22.753 -1.202 23.641
Atomic orbital electron populations
1.21716 0.93466 1.02017 1.03580 1.22571 0.95990 0.83676 0.99893
1.88161 1.16978 1.25899 1.93530 1.22708 0.83744 0.93033 1.01217
0.85830 1.23527 1.03490 1.01841 0.90349 1.22272 1.01116 0.97785
0.97617 0.84012 1.22430 0.88183 0.80618 0.76133 1.90724 1.16535
1.74952 1.54605 1.86522 1.39949 1.31802 1.66408 1.22844 0.90522
0.89666 0.99314 1.19766 0.87709 0.82723 0.79193 1.90717 1.13641
1.75774 1.57798 1.45490 1.05941 1.22316 1.54301 1.19859 0.93322
0.81493 0.95291 1.21241 1.37615 0.95743 1.02447 0.90580 1.24811
0.95373 0.95705 0.96872 1.69890 1.44599 1.04408 1.34269 0.86870
0.80840 0.77752 0.84411 1.19737 1.20904 1.19005 1.17750 0.83942
0.98939 0.93445 1.21414 0.93230 1.00083 0.99295 1.21009 0.94815
0.99415 0.97183 1.21106 0.99492 1.01337 0.92819 1.20964 0.92681
1.00239 0.98947 1.21264 0.96031 1.00773 0.96339 0.91179 0.91797
0.91536 0.93283 0.93306 0.86365 0.87238 0.88200 0.88754 0.94613
0.93818 0.92440 0.85652 0.85825 0.86167 0.85934 0.85751
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16
2 C 0.06 0.45 6.53 37.16 0.24 0.69 16
3 O -0.33 -3.84 8.48 -57.35 -0.49 -4.33 16
4 C 0.05 0.47 6.40 -26.73 -0.17 0.30 16
5 H 0.12 0.69 7.93 -51.93 -0.41 0.28 16
6 C -0.15 -1.37 10.18 -26.73 -0.27 -1.64 16
7 C -0.17 -1.84 6.30 -91.78 -0.58 -2.41 16
8 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16
9 C 0.48 7.43 7.74 36.00 0.28 7.70 16
10 O -0.48 -8.28 14.68 -26.11 -0.38 -8.66 16
11 O -0.33 -5.82 9.76 -45.89 -0.45 -6.26 16
12 C 0.05 0.95 4.46 36.00 0.16 1.11 16
13 C 0.52 11.17 7.65 -10.99 -0.08 11.08 16
14 O -0.51 -12.71 16.06 -14.05 -0.23 -12.94 16
15 N -0.55 -11.81 2.51 -114.74 -0.29 -12.10 16
16 C 0.22 5.41 4.22 -5.19 -0.02 5.38 16
17 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16
18 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16
19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16
20 N -0.89 -27.52 13.96 55.43 0.77 -26.75 16
21 Si 0.87 21.50 27.47 -169.99 -4.67 16.84 16
22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16
23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
24 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16
25 C 0.15 2.74 4.43 -83.70 -0.37 2.37 16
26 C -0.12 -2.01 8.45 -39.39 -0.33 -2.34 16
27 C -0.11 -1.45 10.04 -39.61 -0.40 -1.85 16
28 C -0.13 -1.61 10.04 -39.55 -0.40 -2.01 16
29 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16
30 C -0.12 -1.94 9.66 -39.39 -0.38 -2.33 16
31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16
35 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16
36 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16
38 H 0.10 1.67 6.88 -51.93 -0.36 1.32 16
39 H 0.09 1.51 7.86 -51.93 -0.41 1.10 16
40 H 0.04 0.85 6.90 -51.93 -0.36 0.49 16
41 H 0.04 1.13 6.79 -51.93 -0.35 0.78 16
42 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16
43 H 0.13 2.13 7.55 -52.49 -0.40 1.74 16
44 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16
45 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16
46 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16
47 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16
LS Contribution 403.15 15.07 6.08 6.08
Total: -1.00 -36.61 403.15 -9.38 -45.99
By element:
Atomic # 1 Polarization: 9.19 SS G_CDS: -6.95 Total: 2.24 kcal
Atomic # 6 Polarization: 2.67 SS G_CDS: -2.78 Total: -0.11 kcal
Atomic # 7 Polarization: -39.33 SS G_CDS: 0.49 Total: -38.85 kcal
Atomic # 8 Polarization: -30.64 SS G_CDS: -1.54 Total: -32.19 kcal
Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.84 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -36.61 -9.38 -45.99 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000917304858.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.969 kcal
(2) G-P(sol) polarization free energy of solvation -36.612 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.581 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.991 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.960 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds