Wall clock time and date at job start Wed Apr 1 2020 05:47:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 O 1.42907 * 109.47079 * 2 1
4 4 C 1.42899 * 113.99940 * 180.02562 * 3 2 1
5 5 H 1.08995 * 115.54842 * 355.67084 * 4 3 2
6 6 C 1.53000 * 117.49948 * 141.38473 * 4 3 2
7 7 C 1.52993 * 60.00106 * 107.48499 * 6 4 3
8 8 H 1.09004 * 117.51530 * 107.48111 * 7 6 4
9 9 C 1.50696 * 117.50183 * 252.50721 * 7 6 4
10 10 O 1.20832 * 120.00129 * 68.62243 * 9 7 6
11 11 O 1.34232 * 120.00392 * 248.62801 * 9 7 6
12 12 C 1.45196 * 117.00426 * 179.97438 * 11 9 7
13 13 C 1.50696 * 109.47322 * 179.97438 * 12 11 9
14 14 O 1.21285 * 120.00152 * 5.12671 * 13 12 11
15 15 N 1.34779 * 119.99773 * 185.12933 * 13 12 11
16 16 C 1.46505 * 119.99560 * 185.22292 * 15 13 12
17 17 C 1.50697 * 109.47508 * 89.99993 * 16 15 13
18 18 H 1.08007 * 119.99778 * 359.97438 * 17 16 15
19 19 C 1.37875 * 120.00251 * 179.97438 * 17 16 15
20 20 N 1.31514 * 119.99756 * 179.97438 * 19 17 16
21 21 Si 1.86797 * 120.00045 * 359.97438 * 19 17 16
22 22 H 1.48497 * 109.47186 * 89.99872 * 21 19 17
23 23 H 1.48497 * 109.47283 * 210.00067 * 21 19 17
24 24 H 1.48500 * 109.46907 * 330.00348 * 21 19 17
25 25 C 1.39920 * 120.00161 * 5.21613 * 15 13 12
26 26 C 1.38872 * 120.07264 * 292.47423 * 25 15 13
27 27 C 1.38111 * 119.92796 * 179.79015 * 26 25 15
28 28 C 1.38288 * 120.06933 * 0.49136 * 27 26 25
29 29 C 1.38282 * 120.14230 * 359.73923 * 28 27 26
30 30 C 1.38109 * 120.06764 * 0.02709 * 29 28 27
31 31 H 1.08993 * 109.47069 * 180.02562 * 1 2 3
32 32 H 1.08996 * 109.47080 * 59.99562 * 1 2 3
33 33 H 1.09007 * 109.46591 * 299.99728 * 1 2 3
34 34 H 1.08991 * 109.47733 * 120.00145 * 2 1 3
35 35 H 1.09002 * 109.46848 * 240.00660 * 2 1 3
36 36 H 1.08999 * 117.49499 * 214.98142 * 6 4 3
37 37 H 1.08998 * 117.49641 * 359.97438 * 6 4 3
38 38 H 1.09004 * 109.47162 * 300.00325 * 12 11 9
39 39 H 1.09007 * 109.47126 * 60.00007 * 12 11 9
40 40 H 1.09004 * 109.46723 * 209.99732 * 16 15 13
41 41 H 1.08994 * 109.47106 * 329.99441 * 16 15 13
42 42 H 0.97009 * 119.99332 * 180.02562 * 20 19 17
43 43 H 1.07993 * 120.03589 * 0.02765 * 26 25 15
44 44 H 1.07994 * 119.96837 * 180.23307 * 27 26 25
45 45 H 1.08000 * 119.92741 * 179.76676 * 28 27 26
46 46 H 1.07997 * 119.96566 * 179.97438 * 29 28 27
47 47 H 1.08000 * 120.03039 * 179.97438 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4309 1.4602 -0.0006
5 1 3.9770 0.5198 0.0733
6 6 4.0511 2.5732 -0.8477
7 6 4.0426 2.6875 0.6780
8 1 4.9912 2.5545 1.1982
9 6 3.0967 3.6848 1.2958
10 8 1.9039 3.4988 1.2436
11 8 3.5792 4.7798 1.9041
12 6 2.6100 5.6971 2.4763
13 6 3.3311 6.8576 3.1121
14 8 4.5353 6.9552 3.0055
15 7 2.6379 7.7869 3.7993
16 6 3.3210 8.9740 4.3195
17 6 3.2792 10.0707 3.2868
18 1 2.7929 9.9004 2.3376
19 6 3.8619 11.2914 3.5537
20 7 3.8258 12.2483 2.6522
21 14 4.7024 11.5863 5.1956
22 1 6.1339 11.2047 5.0945
23 1 4.5974 13.0234 5.5545
24 1 4.0441 10.7650 6.2432
25 6 1.2659 7.6181 4.0157
26 6 0.3806 7.6754 2.9472
27 6 -0.9726 7.5041 3.1636
28 6 -1.4474 7.2857 4.4439
29 6 -0.5690 7.2328 5.5106
30 6 0.7859 7.3986 5.3002
31 1 -0.3633 -1.0276 0.0005
32 1 -0.3633 0.5139 -0.8899
33 1 -0.3633 0.5138 0.8901
34 1 1.8934 -0.5138 0.8899
35 1 1.8933 -0.5137 -0.8901
36 1 5.0053 2.3650 -1.3315
37 1 3.3725 3.2190 -1.4048
38 1 1.9502 6.0652 1.6906
39 1 2.0205 5.1780 3.2321
40 1 2.8220 9.3113 5.2281
41 1 4.3582 8.7266 4.5452
42 1 4.2361 13.1071 2.8398
43 1 0.7504 7.8500 1.9476
44 1 -1.6612 7.5448 2.3326
45 1 -2.5064 7.1558 4.6110
46 1 -0.9429 7.0625 6.5094
47 1 1.4713 7.3576 6.1338
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000917304858.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:47:56
Heat of formation + Delta-G solvation = -111.371618 kcal
Electronic energy + Delta-G solvation = -30320.280903 eV
Core-core repulsion = 26048.478842 eV
Total energy + Delta-G solvation = -4271.802061 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-42.01190 -41.30108 -39.71781 -39.33116 -37.55369 -36.63633 -36.19418 -34.82127
-32.10100 -31.69737 -31.51819 -30.50979 -29.00743 -26.05707 -24.43123 -23.84276
-23.75661 -23.37613 -23.14517 -21.49428 -20.72156 -19.31778 -19.18174 -18.81996
-18.01877 -17.85323 -17.36686 -17.14850 -16.63756 -16.57356 -16.41235 -16.08912
-15.85998 -15.53210 -15.35280 -14.88438 -14.52850 -14.49184 -14.33436 -14.02747
-13.82382 -13.75419 -13.60196 -13.54128 -13.27954 -13.23465 -13.05042 -12.61879
-12.38898 -12.27420 -12.15228 -12.02901 -11.95769 -11.90758 -11.79204 -11.62890
-11.47366 -11.20376 -10.87911 -10.22532 -10.16323 -9.89353 -9.34520 -8.38606
-6.45354 0.26421 0.44079 1.00005 1.11233 1.30744 1.34396 1.34680
1.42787 2.16460 2.27231 2.50409 2.73206 2.78991 2.95124 3.23577
3.57490 3.64295 3.79174 3.81979 3.88666 4.03314 4.05794 4.10817
4.22007 4.27209 4.35761 4.46310 4.51321 4.52893 4.53708 4.61614
4.74600 4.77473 4.80034 4.87084 4.95840 5.04622 5.08675 5.22862
5.28227 5.29235 5.32945 5.47070 5.56962 5.60902 5.97178 6.13988
6.32623 6.40225 6.54513 6.65455 6.96971 7.18864 8.78225
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.011815 B = 0.002887 C = 0.002473
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2369.265587 B = 9695.812813 C =11318.150864
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.049 3.951
3 O -0.367 6.367
4 C 0.062 3.938
5 H 0.167 0.833
6 C -0.147 4.147
7 C -0.191 4.191
8 H 0.165 0.835
9 C 0.479 3.521
10 O -0.507 6.507
11 O -0.349 6.349
12 C 0.069 3.931
13 C 0.514 3.486
14 O -0.554 6.554
15 N -0.551 5.551
16 C 0.229 3.771
17 C -0.541 4.541
18 H 0.028 0.972
19 C 0.015 3.985
20 N -0.941 5.941
21 Si 0.947 3.053
22 H -0.271 1.271
23 H -0.272 1.272
24 H -0.238 1.238
25 C 0.111 3.889
26 C -0.141 4.141
27 C -0.107 4.107
28 C -0.115 4.115
29 C -0.101 4.101
30 C -0.132 4.132
31 H 0.095 0.905
32 H 0.053 0.947
33 H 0.045 0.955
34 H 0.061 0.939
35 H 0.071 0.929
36 H 0.154 0.846
37 H 0.088 0.912
38 H 0.102 0.898
39 H 0.112 0.888
40 H 0.054 0.946
41 H 0.032 0.968
42 H 0.270 0.730
43 H 0.104 0.896
44 H 0.147 0.853
45 H 0.161 0.839
46 H 0.161 0.839
47 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.214 -25.982 -0.053 27.250
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.027 4.027
3 O -0.285 6.285
4 C 0.003 3.997
5 H 0.184 0.816
6 C -0.184 4.184
7 C -0.210 4.210
8 H 0.182 0.818
9 C 0.323 3.677
10 O -0.394 6.394
11 O -0.266 6.266
12 C -0.008 4.008
13 C 0.302 3.698
14 O -0.432 6.432
15 N -0.279 5.279
16 C 0.109 3.891
17 C -0.580 4.580
18 H 0.046 0.954
19 C -0.184 4.184
20 N -0.581 5.581
21 Si 0.768 3.232
22 H -0.196 1.196
23 H -0.197 1.197
24 H -0.161 1.161
25 C 0.021 3.979
26 C -0.160 4.160
27 C -0.125 4.125
28 C -0.133 4.133
29 C -0.119 4.119
30 C -0.151 4.151
31 H 0.114 0.886
32 H 0.073 0.927
33 H 0.065 0.935
34 H 0.079 0.921
35 H 0.090 0.910
36 H 0.172 0.828
37 H 0.107 0.893
38 H 0.120 0.880
39 H 0.129 0.871
40 H 0.072 0.928
41 H 0.050 0.950
42 H 0.079 0.921
43 H 0.122 0.878
44 H 0.165 0.835
45 H 0.179 0.821
46 H 0.179 0.821
47 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -8.008 -25.615 -0.144 26.838
hybrid contribution 0.655 1.152 0.140 1.332
sum -7.353 -24.463 -0.005 25.544
Atomic orbital electron populations
1.21753 0.93775 1.03213 1.02076 1.22787 0.95886 0.82512 1.01525
1.88120 1.18624 1.28190 1.93599 1.23111 0.83125 0.93978 0.99450
0.81633 1.23676 1.04726 1.01295 0.88708 1.22549 1.01515 0.97955
0.98984 0.81804 1.23411 0.88877 0.80191 0.75268 1.90699 1.17803
1.75338 1.55549 1.86548 1.40429 1.32641 1.66963 1.22589 0.89929
0.88737 0.99508 1.20419 0.87346 0.83476 0.78570 1.90668 1.15645
1.77164 1.59741 1.45381 1.07566 1.21148 1.53823 1.19527 0.93397
0.81618 0.94605 1.21423 1.37233 0.97560 1.01747 0.95355 1.25822
0.95949 0.95164 1.01435 1.70042 1.45930 1.05169 1.36913 0.85734
0.79400 0.78492 0.79533 1.19626 1.19708 1.16105 1.18040 0.82237
1.02363 0.95235 1.21405 0.94780 1.01683 0.98180 1.21334 0.93583
0.98469 0.99107 1.21609 1.01512 0.98530 0.91662 1.21413 0.91280
0.98183 1.00995 1.21443 0.97696 1.00876 0.95114 0.88633 0.92745
0.93544 0.92086 0.91040 0.82821 0.89333 0.88017 0.87051 0.92837
0.94979 0.92057 0.87786 0.83489 0.82103 0.82115 0.85152
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16
2 C 0.05 0.71 6.53 71.98 0.47 1.18 16
3 O -0.37 -8.26 8.48 -127.83 -1.08 -9.34 16
4 C 0.06 1.00 6.40 30.59 0.20 1.19 16
5 H 0.17 1.20 7.93 -2.39 -0.02 1.18 16
6 C -0.15 -2.39 10.18 30.59 0.31 -2.08 16
7 C -0.19 -4.00 6.30 -11.54 -0.07 -4.07 16
8 H 0.16 2.61 8.14 -2.38 -0.02 2.59 16
9 C 0.48 15.07 7.74 71.23 0.55 15.62 16
10 O -0.51 -17.92 14.68 28.98 0.43 -17.50 16
11 O -0.35 -12.86 9.76 -45.10 -0.44 -13.30 16
12 C 0.07 2.58 4.46 71.23 0.32 2.90 16
13 C 0.51 23.40 7.65 87.66 0.67 24.07 16
14 O -0.55 -29.60 16.06 15.70 0.25 -29.35 16
15 N -0.55 -24.70 2.51 -635.31 -1.59 -26.30 16
16 C 0.23 11.63 4.22 85.63 0.36 11.99 16
17 C -0.54 -32.78 9.94 25.60 0.25 -32.52 16
18 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16
19 C 0.01 0.89 5.47 84.65 0.46 1.36 16
20 N -0.94 -60.18 13.96 21.45 0.30 -59.88 16
21 Si 0.95 44.72 27.47 68.60 1.88 46.61 16
22 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16
23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16
24 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16
25 C 0.11 4.13 4.43 38.15 0.17 4.30 16
26 C -0.14 -4.84 8.45 22.39 0.19 -4.65 16
27 C -0.11 -2.77 10.04 22.25 0.22 -2.54 16
28 C -0.12 -2.43 10.04 22.29 0.22 -2.21 16
29 C -0.10 -2.24 10.04 22.25 0.22 -2.02 16
30 C -0.13 -3.93 9.66 22.39 0.22 -3.72 16
31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16
32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16
33 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16
34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16
35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16
36 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16
37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16
38 H 0.10 3.70 6.88 -2.38 -0.02 3.68 16
39 H 0.11 3.70 7.86 -2.38 -0.02 3.68 16
40 H 0.05 2.52 6.90 -2.38 -0.02 2.50 16
41 H 0.03 1.70 6.79 -2.39 -0.02 1.69 16
42 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16
43 H 0.10 3.89 7.55 -2.91 -0.02 3.87 16
44 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16
45 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16
46 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16
47 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16
Total: -1.00 -86.45 403.15 6.16 -80.29
By element:
Atomic # 1 Polarization: 20.55 SS G_CDS: 0.91 Total: 21.46 kcal
Atomic # 6 Polarization: 1.80 SS G_CDS: 5.51 Total: 7.30 kcal
Atomic # 7 Polarization: -84.88 SS G_CDS: -1.29 Total: -86.17 kcal
Atomic # 8 Polarization: -68.64 SS G_CDS: -0.85 Total: -69.49 kcal
Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal
Total: -86.45 6.16 -80.29 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000917304858.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.082 kcal
(2) G-P(sol) polarization free energy of solvation -86.454 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.536 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.289 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.372 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds