Wall clock time and date at job start Wed Apr 1 2020 05:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42907 * 109.47079 * 2 1 4 4 C 1.42899 * 113.99940 * 180.02562 * 3 2 1 5 5 H 1.08995 * 115.54842 * 355.67084 * 4 3 2 6 6 C 1.53000 * 117.49948 * 141.38473 * 4 3 2 7 7 C 1.52993 * 60.00106 * 107.48499 * 6 4 3 8 8 H 1.09004 * 117.51530 * 107.48111 * 7 6 4 9 9 C 1.50696 * 117.50183 * 252.50721 * 7 6 4 10 10 O 1.20832 * 120.00129 * 68.62243 * 9 7 6 11 11 O 1.34232 * 120.00392 * 248.62801 * 9 7 6 12 12 C 1.45196 * 117.00426 * 179.97438 * 11 9 7 13 13 C 1.50696 * 109.47322 * 179.97438 * 12 11 9 14 14 O 1.21285 * 120.00152 * 5.12671 * 13 12 11 15 15 N 1.34779 * 119.99773 * 185.12933 * 13 12 11 16 16 C 1.46505 * 119.99560 * 185.22292 * 15 13 12 17 17 C 1.50697 * 109.47508 * 89.99993 * 16 15 13 18 18 H 1.08007 * 119.99778 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00251 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99756 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00045 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47186 * 89.99872 * 21 19 17 23 23 H 1.48497 * 109.47283 * 210.00067 * 21 19 17 24 24 H 1.48500 * 109.46907 * 330.00348 * 21 19 17 25 25 C 1.39920 * 120.00161 * 5.21613 * 15 13 12 26 26 C 1.38872 * 120.07264 * 292.47423 * 25 15 13 27 27 C 1.38111 * 119.92796 * 179.79015 * 26 25 15 28 28 C 1.38288 * 120.06933 * 0.49136 * 27 26 25 29 29 C 1.38282 * 120.14230 * 359.73923 * 28 27 26 30 30 C 1.38109 * 120.06764 * 0.02709 * 29 28 27 31 31 H 1.08993 * 109.47069 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47080 * 59.99562 * 1 2 3 33 33 H 1.09007 * 109.46591 * 299.99728 * 1 2 3 34 34 H 1.08991 * 109.47733 * 120.00145 * 2 1 3 35 35 H 1.09002 * 109.46848 * 240.00660 * 2 1 3 36 36 H 1.08999 * 117.49499 * 214.98142 * 6 4 3 37 37 H 1.08998 * 117.49641 * 359.97438 * 6 4 3 38 38 H 1.09004 * 109.47162 * 300.00325 * 12 11 9 39 39 H 1.09007 * 109.47126 * 60.00007 * 12 11 9 40 40 H 1.09004 * 109.46723 * 209.99732 * 16 15 13 41 41 H 1.08994 * 109.47106 * 329.99441 * 16 15 13 42 42 H 0.97009 * 119.99332 * 180.02562 * 20 19 17 43 43 H 1.07993 * 120.03589 * 0.02765 * 26 25 15 44 44 H 1.07994 * 119.96837 * 180.23307 * 27 26 25 45 45 H 1.08000 * 119.92741 * 179.76676 * 28 27 26 46 46 H 1.07997 * 119.96566 * 179.97438 * 29 28 27 47 47 H 1.08000 * 120.03039 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9770 0.5198 0.0733 6 6 4.0511 2.5732 -0.8477 7 6 4.0426 2.6875 0.6780 8 1 4.9912 2.5545 1.1982 9 6 3.0967 3.6848 1.2958 10 8 1.9039 3.4988 1.2436 11 8 3.5792 4.7798 1.9041 12 6 2.6100 5.6971 2.4763 13 6 3.3311 6.8576 3.1121 14 8 4.5353 6.9552 3.0055 15 7 2.6379 7.7869 3.7993 16 6 3.3210 8.9740 4.3195 17 6 3.2792 10.0707 3.2868 18 1 2.7929 9.9004 2.3376 19 6 3.8619 11.2914 3.5537 20 7 3.8258 12.2483 2.6522 21 14 4.7024 11.5863 5.1956 22 1 6.1339 11.2047 5.0945 23 1 4.5974 13.0234 5.5545 24 1 4.0441 10.7650 6.2432 25 6 1.2659 7.6181 4.0157 26 6 0.3806 7.6754 2.9472 27 6 -0.9726 7.5041 3.1636 28 6 -1.4474 7.2857 4.4439 29 6 -0.5690 7.2328 5.5106 30 6 0.7859 7.3986 5.3002 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 0.5138 0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5137 -0.8901 36 1 5.0053 2.3650 -1.3315 37 1 3.3725 3.2190 -1.4048 38 1 1.9502 6.0652 1.6906 39 1 2.0205 5.1780 3.2321 40 1 2.8220 9.3113 5.2281 41 1 4.3582 8.7266 4.5452 42 1 4.2361 13.1071 2.8398 43 1 0.7504 7.8500 1.9476 44 1 -1.6612 7.5448 2.3326 45 1 -2.5064 7.1558 4.6110 46 1 -0.9429 7.0625 6.5094 47 1 1.4713 7.3576 6.1338 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917304858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:56 Heat of formation + Delta-G solvation = -111.371618 kcal Electronic energy + Delta-G solvation = -30320.280903 eV Core-core repulsion = 26048.478842 eV Total energy + Delta-G solvation = -4271.802061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.01190 -41.30108 -39.71781 -39.33116 -37.55369 -36.63633 -36.19418 -34.82127 -32.10100 -31.69737 -31.51819 -30.50979 -29.00743 -26.05707 -24.43123 -23.84276 -23.75661 -23.37613 -23.14517 -21.49428 -20.72156 -19.31778 -19.18174 -18.81996 -18.01877 -17.85323 -17.36686 -17.14850 -16.63756 -16.57356 -16.41235 -16.08912 -15.85998 -15.53210 -15.35280 -14.88438 -14.52850 -14.49184 -14.33436 -14.02747 -13.82382 -13.75419 -13.60196 -13.54128 -13.27954 -13.23465 -13.05042 -12.61879 -12.38898 -12.27420 -12.15228 -12.02901 -11.95769 -11.90758 -11.79204 -11.62890 -11.47366 -11.20376 -10.87911 -10.22532 -10.16323 -9.89353 -9.34520 -8.38606 -6.45354 0.26421 0.44079 1.00005 1.11233 1.30744 1.34396 1.34680 1.42787 2.16460 2.27231 2.50409 2.73206 2.78991 2.95124 3.23577 3.57490 3.64295 3.79174 3.81979 3.88666 4.03314 4.05794 4.10817 4.22007 4.27209 4.35761 4.46310 4.51321 4.52893 4.53708 4.61614 4.74600 4.77473 4.80034 4.87084 4.95840 5.04622 5.08675 5.22862 5.28227 5.29235 5.32945 5.47070 5.56962 5.60902 5.97178 6.13988 6.32623 6.40225 6.54513 6.65455 6.96971 7.18864 8.78225 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011815 B = 0.002887 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.265587 B = 9695.812813 C =11318.150864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.062 3.938 5 H 0.167 0.833 6 C -0.147 4.147 7 C -0.191 4.191 8 H 0.165 0.835 9 C 0.479 3.521 10 O -0.507 6.507 11 O -0.349 6.349 12 C 0.069 3.931 13 C 0.514 3.486 14 O -0.554 6.554 15 N -0.551 5.551 16 C 0.229 3.771 17 C -0.541 4.541 18 H 0.028 0.972 19 C 0.015 3.985 20 N -0.941 5.941 21 Si 0.947 3.053 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.238 1.238 25 C 0.111 3.889 26 C -0.141 4.141 27 C -0.107 4.107 28 C -0.115 4.115 29 C -0.101 4.101 30 C -0.132 4.132 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.154 0.846 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.054 0.946 41 H 0.032 0.968 42 H 0.270 0.730 43 H 0.104 0.896 44 H 0.147 0.853 45 H 0.161 0.839 46 H 0.161 0.839 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.214 -25.982 -0.053 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.285 6.285 4 C 0.003 3.997 5 H 0.184 0.816 6 C -0.184 4.184 7 C -0.210 4.210 8 H 0.182 0.818 9 C 0.323 3.677 10 O -0.394 6.394 11 O -0.266 6.266 12 C -0.008 4.008 13 C 0.302 3.698 14 O -0.432 6.432 15 N -0.279 5.279 16 C 0.109 3.891 17 C -0.580 4.580 18 H 0.046 0.954 19 C -0.184 4.184 20 N -0.581 5.581 21 Si 0.768 3.232 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.161 1.161 25 C 0.021 3.979 26 C -0.160 4.160 27 C -0.125 4.125 28 C -0.133 4.133 29 C -0.119 4.119 30 C -0.151 4.151 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.172 0.828 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.165 0.835 45 H 0.179 0.821 46 H 0.179 0.821 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.008 -25.615 -0.144 26.838 hybrid contribution 0.655 1.152 0.140 1.332 sum -7.353 -24.463 -0.005 25.544 Atomic orbital electron populations 1.21753 0.93775 1.03213 1.02076 1.22787 0.95886 0.82512 1.01525 1.88120 1.18624 1.28190 1.93599 1.23111 0.83125 0.93978 0.99450 0.81633 1.23676 1.04726 1.01295 0.88708 1.22549 1.01515 0.97955 0.98984 0.81804 1.23411 0.88877 0.80191 0.75268 1.90699 1.17803 1.75338 1.55549 1.86548 1.40429 1.32641 1.66963 1.22589 0.89929 0.88737 0.99508 1.20419 0.87346 0.83476 0.78570 1.90668 1.15645 1.77164 1.59741 1.45381 1.07566 1.21148 1.53823 1.19527 0.93397 0.81618 0.94605 1.21423 1.37233 0.97560 1.01747 0.95355 1.25822 0.95949 0.95164 1.01435 1.70042 1.45930 1.05169 1.36913 0.85734 0.79400 0.78492 0.79533 1.19626 1.19708 1.16105 1.18040 0.82237 1.02363 0.95235 1.21405 0.94780 1.01683 0.98180 1.21334 0.93583 0.98469 0.99107 1.21609 1.01512 0.98530 0.91662 1.21413 0.91280 0.98183 1.00995 1.21443 0.97696 1.00876 0.95114 0.88633 0.92745 0.93544 0.92086 0.91040 0.82821 0.89333 0.88017 0.87051 0.92837 0.94979 0.92057 0.87786 0.83489 0.82103 0.82115 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.05 0.71 6.53 71.98 0.47 1.18 16 3 O -0.37 -8.26 8.48 -127.83 -1.08 -9.34 16 4 C 0.06 1.00 6.40 30.59 0.20 1.19 16 5 H 0.17 1.20 7.93 -2.39 -0.02 1.18 16 6 C -0.15 -2.39 10.18 30.59 0.31 -2.08 16 7 C -0.19 -4.00 6.30 -11.54 -0.07 -4.07 16 8 H 0.16 2.61 8.14 -2.38 -0.02 2.59 16 9 C 0.48 15.07 7.74 71.23 0.55 15.62 16 10 O -0.51 -17.92 14.68 28.98 0.43 -17.50 16 11 O -0.35 -12.86 9.76 -45.10 -0.44 -13.30 16 12 C 0.07 2.58 4.46 71.23 0.32 2.90 16 13 C 0.51 23.40 7.65 87.66 0.67 24.07 16 14 O -0.55 -29.60 16.06 15.70 0.25 -29.35 16 15 N -0.55 -24.70 2.51 -635.31 -1.59 -26.30 16 16 C 0.23 11.63 4.22 85.63 0.36 11.99 16 17 C -0.54 -32.78 9.94 25.60 0.25 -32.52 16 18 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 19 C 0.01 0.89 5.47 84.65 0.46 1.36 16 20 N -0.94 -60.18 13.96 21.45 0.30 -59.88 16 21 Si 0.95 44.72 27.47 68.60 1.88 46.61 16 22 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 25 C 0.11 4.13 4.43 38.15 0.17 4.30 16 26 C -0.14 -4.84 8.45 22.39 0.19 -4.65 16 27 C -0.11 -2.77 10.04 22.25 0.22 -2.54 16 28 C -0.12 -2.43 10.04 22.29 0.22 -2.21 16 29 C -0.10 -2.24 10.04 22.25 0.22 -2.02 16 30 C -0.13 -3.93 9.66 22.39 0.22 -3.72 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.10 3.70 6.88 -2.38 -0.02 3.68 16 39 H 0.11 3.70 7.86 -2.38 -0.02 3.68 16 40 H 0.05 2.52 6.90 -2.38 -0.02 2.50 16 41 H 0.03 1.70 6.79 -2.39 -0.02 1.69 16 42 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 43 H 0.10 3.89 7.55 -2.91 -0.02 3.87 16 44 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 45 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 46 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 47 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -86.45 403.15 6.16 -80.29 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.91 Total: 21.46 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 5.51 Total: 7.30 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -1.29 Total: -86.17 kcal Atomic # 8 Polarization: -68.64 SS G_CDS: -0.85 Total: -69.49 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -86.45 6.16 -80.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917304858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.082 kcal (2) G-P(sol) polarization free energy of solvation -86.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds