Wall clock time and date at job start Wed Apr 1 2020 04:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.29315 * 2 1 4 4 C 1.54003 * 110.32640 * 237.86258 * 2 1 3 5 5 N 1.47483 * 107.08827 * 242.31276 * 4 2 1 6 6 C 1.34779 * 127.03879 * 154.51222 * 5 4 2 7 7 O 1.21730 * 120.00487 * 185.65264 * 6 5 4 8 8 C 1.46459 * 119.99504 * 5.65457 * 6 5 4 9 9 C 1.37467 * 125.80160 * 186.75032 * 8 6 5 10 10 C 1.40662 * 107.55058 * 179.97438 * 9 8 6 11 11 S 1.76017 * 142.39313 * 179.97438 * 10 9 8 12 12 C 1.75584 * 91.31392 * 180.02562 * 11 10 9 13 13 C 1.32772 * 110.47021 * 359.97438 * 12 11 10 14 14 C 1.38238 * 108.03513 * 359.97438 * 10 9 8 15 15 N 1.37919 * 125.80553 * 6.72874 * 8 6 5 16 16 H 0.96996 * 125.68642 * 359.97438 * 15 8 6 17 17 C 1.48120 * 105.92922 * 334.78038 * 5 4 2 18 18 C 1.54594 * 103.42381 * 39.02305 * 17 5 4 19 19 H 1.09007 * 110.57442 * 81.16819 * 18 17 5 20 20 C 1.53000 * 110.83349 * 204.44757 * 18 17 5 21 21 C 1.53003 * 109.46910 * 288.56045 * 20 18 17 22 22 N 1.46496 * 109.47113 * 180.02562 * 21 20 18 23 23 C 1.36940 * 120.00367 * 180.02562 * 22 21 20 24 24 H 1.08005 * 119.99391 * 359.97438 * 23 22 21 25 25 C 1.38811 * 120.00164 * 179.97438 * 23 22 21 26 26 N 1.31615 * 119.99861 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00002 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46975 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47188 * 119.99424 * 27 25 23 30 30 H 1.48501 * 109.47367 * 240.00112 * 27 25 23 31 31 H 1.09004 * 109.47815 * 180.68324 * 1 2 3 32 32 H 1.09000 * 109.47537 * 300.68160 * 1 2 3 33 33 H 1.09001 * 109.47101 * 60.67969 * 1 2 3 34 34 H 1.08998 * 109.91437 * 122.95461 * 4 2 1 35 35 H 1.09007 * 110.07520 * 1.76157 * 4 2 1 36 36 H 1.07994 * 126.22585 * 359.97438 * 9 8 6 37 37 H 1.07995 * 124.77030 * 179.97438 * 12 11 10 38 38 H 1.08005 * 122.16275 * 180.02562 * 13 12 11 39 39 H 1.09005 * 110.65828 * 157.50570 * 17 5 4 40 40 H 1.08993 * 110.66154 * 280.61820 * 17 5 4 41 41 H 1.08998 * 109.47401 * 48.56035 * 20 18 17 42 42 H 1.09003 * 109.47280 * 168.56333 * 20 18 17 43 43 H 1.08997 * 109.47381 * 299.99730 * 21 20 18 44 44 H 1.08995 * 109.47505 * 59.99972 * 21 20 18 45 45 H 0.97003 * 120.00162 * 359.97438 * 22 21 20 46 46 H 0.97006 * 119.99887 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8296 -1.9204 -0.7103 6 6 3.0643 -3.0861 -1.3448 7 8 3.6270 -3.9942 -0.7613 8 6 2.6423 -3.2601 -2.7364 9 6 2.7015 -4.4310 -3.4542 10 6 2.2011 -4.1650 -4.7416 11 16 1.8748 -4.9250 -6.2954 12 6 1.2672 -3.4143 -6.9523 13 6 1.3268 -2.4532 -6.0383 14 6 1.8411 -2.8314 -4.7938 15 7 2.1176 -2.2773 -3.5494 16 1 1.9658 -1.3538 -3.2948 17 6 3.2815 -1.5369 0.6472 18 6 2.0692 -0.7721 1.2263 19 1 1.3208 -1.4693 1.6031 20 6 2.5113 0.1967 2.3249 21 6 2.9216 -0.5950 3.5682 22 7 3.3443 0.3326 4.6203 23 6 3.7588 -0.1503 5.8329 24 1 3.7736 -1.2150 6.0137 25 6 4.1598 0.7287 6.8297 26 7 4.1422 2.0261 6.6091 27 14 4.7245 0.0701 8.4840 28 1 4.6508 -1.4131 8.4776 29 1 6.1250 0.4954 8.7342 30 1 3.8459 0.6041 9.5555 31 1 -0.3635 -1.0276 0.0123 32 1 -0.3634 0.5244 0.8838 33 1 -0.3633 0.5032 -0.8960 34 1 2.7166 -0.1222 -1.8111 35 1 1.2352 -1.1173 -1.8377 36 1 3.0658 -5.3821 -3.0950 37 1 0.8970 -3.2850 -7.9586 38 1 0.9992 -1.4445 -6.2424 39 1 3.4979 -2.4224 1.2449 40 1 4.1540 -0.8859 0.5925 41 1 3.3590 0.7840 1.9720 42 1 1.6861 0.8636 2.5749 43 1 2.0739 -1.1823 3.9212 44 1 3.7467 -1.2620 3.3183 45 1 3.3314 1.2888 4.4578 46 1 4.4228 2.6403 7.3055 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104870914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:06 Heat of formation + Delta-G solvation = 50.088653 kcal Electronic energy + Delta-G solvation = -27233.748758 eV Core-core repulsion = 23443.993762 eV Total energy + Delta-G solvation = -3789.754997 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.80708 -40.07747 -38.16918 -35.71817 -35.19690 -33.40703 -32.18068 -31.38633 -30.33206 -28.92245 -27.03007 -26.85503 -24.60623 -23.61103 -22.79045 -22.01179 -21.12523 -20.70407 -20.20284 -19.55995 -18.40641 -17.14293 -16.86864 -16.26417 -15.91198 -15.83556 -15.12178 -14.91752 -14.69829 -14.46940 -14.34272 -13.98183 -13.87452 -13.54827 -13.34530 -13.29335 -13.16999 -13.01868 -12.54461 -12.36782 -12.23948 -11.94572 -11.81581 -11.47936 -11.33139 -11.20097 -11.07812 -10.86109 -10.67907 -10.52940 -10.35477 -10.33117 -10.10971 -9.97255 -9.68291 -9.03192 -8.87406 -8.45441 -8.03956 -6.92126 -5.76857 -3.05305 0.38165 1.16805 1.59070 1.70413 2.36605 2.37370 2.70169 3.02845 3.43877 3.49863 3.52012 4.07012 4.15174 4.33878 4.44573 4.51583 4.59343 4.62163 4.83752 4.92797 4.96524 5.09685 5.16418 5.22347 5.34424 5.36854 5.39469 5.52710 5.56019 5.60431 5.60977 5.68774 5.74847 5.77218 5.90301 5.95476 6.05126 6.09183 6.21717 6.28471 6.34107 6.35994 6.82031 6.85570 6.87956 7.18247 7.71527 7.80444 8.42410 9.53592 10.11432 10.45777 11.46198 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.027138 B = 0.001821 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.497770 B =15370.043203 C =16141.978971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.093 0.907 4 C 0.090 3.910 5 N -0.620 5.620 6 C 0.604 3.396 7 O -0.518 6.518 8 C 0.014 3.986 9 C -0.071 4.071 10 C -0.219 4.219 11 S 0.132 5.868 12 C -0.188 4.188 13 C -0.115 4.115 14 C 0.062 3.938 15 N -0.544 5.544 16 H 0.420 0.580 17 C 0.110 3.890 18 C -0.091 4.091 19 H 0.086 0.914 20 C -0.114 4.114 21 C 0.151 3.849 22 N -0.734 5.734 23 C -0.238 4.238 24 H 0.071 0.929 25 C -0.016 4.016 26 N -0.934 5.934 27 Si 0.907 3.093 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.141 0.859 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.018 0.982 44 H 0.020 0.980 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 -6.993 -30.904 32.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 H 0.111 0.889 4 C -0.033 4.033 5 N -0.354 5.354 6 C 0.392 3.608 7 O -0.393 6.393 8 C -0.101 4.101 9 C -0.102 4.102 10 C -0.339 4.339 11 S 0.392 5.608 12 C -0.324 4.324 13 C -0.149 4.149 14 C -0.057 4.057 15 N -0.151 5.151 16 H 0.263 0.737 17 C -0.012 4.012 18 C -0.111 4.111 19 H 0.104 0.896 20 C -0.152 4.152 21 C 0.024 3.976 22 N -0.378 5.378 23 C -0.369 4.369 24 H 0.089 0.911 25 C -0.211 4.211 26 N -0.583 5.583 27 Si 0.738 3.262 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.175 0.825 37 H 0.190 0.810 38 H 0.159 0.841 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.216 0.784 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.554 -8.971 -31.006 33.392 hybrid contribution 0.012 2.083 1.481 2.556 sum -8.542 -6.888 -29.525 31.498 Atomic orbital electron populations 1.21861 0.93826 1.02153 1.02346 1.22146 0.96614 0.99834 0.93289 0.88907 1.22470 0.95118 0.87892 0.97866 1.48715 1.53609 1.14367 1.18698 1.16530 0.79327 0.81225 0.83671 1.90907 1.42751 1.39597 1.66088 1.20279 1.08540 0.89248 0.91994 1.20422 1.02498 0.97599 0.89699 1.22708 1.13776 0.97208 1.00209 1.83972 1.65244 1.10201 1.01418 1.25253 1.07502 0.96128 1.03550 1.18897 1.04846 1.01240 0.89887 1.18417 1.06720 0.92272 0.88302 1.42622 1.52139 1.11566 1.08812 0.73700 1.22665 0.97107 1.00305 0.81083 1.22302 0.96992 0.97376 0.94397 0.89565 1.21724 1.01352 0.97584 0.94583 1.20679 0.96483 0.92820 0.87667 1.42365 1.79108 1.05117 1.11227 1.19299 1.35502 0.92207 0.89912 0.91107 1.24745 1.02484 0.95333 0.98573 1.69669 1.54387 1.00709 1.33580 0.86112 0.78018 0.77926 0.84143 1.20514 1.21853 1.21875 0.92513 0.91420 0.92629 0.91180 0.91012 0.82478 0.80980 0.84132 0.88911 0.90166 0.91549 0.91277 0.96413 0.96264 0.78353 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.90 37.15 0.33 -0.78 16 2 C -0.10 -0.85 3.17 -89.25 -0.28 -1.13 16 3 H 0.09 0.74 7.85 -51.93 -0.41 0.34 16 4 C 0.09 0.71 5.00 -2.98 -0.01 0.70 16 5 N -0.62 -7.03 3.29 -171.59 -0.57 -7.59 16 6 C 0.60 8.02 7.84 -12.95 -0.10 7.92 16 7 O -0.52 -8.71 17.06 5.16 0.09 -8.63 16 8 C 0.01 0.16 6.81 -82.10 -0.56 -0.40 16 9 C -0.07 -0.81 10.61 -38.95 -0.41 -1.22 16 10 C -0.22 -2.24 7.26 -38.67 -0.28 -2.52 16 11 S 0.13 1.01 23.31 -107.50 -2.51 -1.49 16 12 C -0.19 -1.13 11.13 28.86 0.32 -0.81 16 13 C -0.12 -0.78 10.16 -40.84 -0.42 -1.20 16 14 C 0.06 0.56 7.67 -84.00 -0.64 -0.08 16 15 N -0.54 -4.82 5.54 -7.34 -0.04 -4.86 16 16 H 0.42 2.71 5.40 -40.82 -0.22 2.49 16 17 C 0.11 1.36 5.94 -2.31 -0.01 1.35 16 18 C -0.09 -1.05 2.58 -88.93 -0.23 -1.27 16 19 H 0.09 1.05 7.86 -51.92 -0.41 0.64 16 20 C -0.11 -1.65 4.70 -26.73 -0.13 -1.78 16 21 C 0.15 2.96 6.15 -4.04 -0.02 2.93 16 22 N -0.73 -18.58 5.60 -59.91 -0.34 -18.91 16 23 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 24 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 25 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 26 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 27 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.44 7.92 -51.93 -0.41 0.03 16 35 H 0.07 0.48 5.68 -51.92 -0.29 0.19 16 36 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.09 1.32 7.79 -51.93 -0.40 0.92 16 40 H 0.08 0.98 7.93 -51.93 -0.41 0.56 16 41 H 0.07 0.96 7.99 -51.93 -0.41 0.54 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.02 0.39 7.67 -51.93 -0.40 -0.01 16 45 H 0.38 10.08 7.67 -40.82 -0.31 9.77 16 46 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -34.16 386.93 -11.14 -45.30 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.61 Total: 6.11 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.70 Total: -5.75 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.22 Total: -58.99 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.49 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.16 -11.14 -45.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104870914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.385 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds