Wall clock time and date at job start Wed Apr 1 2020 04:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.29315 * 2 1 4 4 C 1.54003 * 110.32640 * 237.86258 * 2 1 3 5 5 N 1.47483 * 107.08827 * 242.31276 * 4 2 1 6 6 C 1.34779 * 127.03879 * 154.51222 * 5 4 2 7 7 O 1.21730 * 120.00487 * 185.65264 * 6 5 4 8 8 C 1.46459 * 119.99504 * 5.65457 * 6 5 4 9 9 C 1.37467 * 125.80160 * 186.75032 * 8 6 5 10 10 C 1.40662 * 107.55058 * 179.97438 * 9 8 6 11 11 S 1.76017 * 142.39313 * 179.97438 * 10 9 8 12 12 C 1.75584 * 91.31392 * 180.02562 * 11 10 9 13 13 C 1.32772 * 110.47021 * 359.97438 * 12 11 10 14 14 C 1.38238 * 108.03513 * 359.97438 * 10 9 8 15 15 N 1.37919 * 125.80553 * 6.72874 * 8 6 5 16 16 H 0.96996 * 125.68642 * 359.97438 * 15 8 6 17 17 C 1.48120 * 105.92922 * 334.78038 * 5 4 2 18 18 C 1.54594 * 103.42381 * 39.02305 * 17 5 4 19 19 H 1.09007 * 110.57442 * 81.16819 * 18 17 5 20 20 C 1.53000 * 110.83349 * 204.44757 * 18 17 5 21 21 C 1.53003 * 109.46910 * 288.56045 * 20 18 17 22 22 N 1.46496 * 109.47113 * 180.02562 * 21 20 18 23 23 C 1.36940 * 120.00367 * 180.02562 * 22 21 20 24 24 H 1.08005 * 119.99391 * 359.97438 * 23 22 21 25 25 C 1.38811 * 120.00164 * 179.97438 * 23 22 21 26 26 N 1.31615 * 119.99861 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00002 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46975 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47188 * 119.99424 * 27 25 23 30 30 H 1.48501 * 109.47367 * 240.00112 * 27 25 23 31 31 H 1.09004 * 109.47815 * 180.68324 * 1 2 3 32 32 H 1.09000 * 109.47537 * 300.68160 * 1 2 3 33 33 H 1.09001 * 109.47101 * 60.67969 * 1 2 3 34 34 H 1.08998 * 109.91437 * 122.95461 * 4 2 1 35 35 H 1.09007 * 110.07520 * 1.76157 * 4 2 1 36 36 H 1.07994 * 126.22585 * 359.97438 * 9 8 6 37 37 H 1.07995 * 124.77030 * 179.97438 * 12 11 10 38 38 H 1.08005 * 122.16275 * 180.02562 * 13 12 11 39 39 H 1.09005 * 110.65828 * 157.50570 * 17 5 4 40 40 H 1.08993 * 110.66154 * 280.61820 * 17 5 4 41 41 H 1.08998 * 109.47401 * 48.56035 * 20 18 17 42 42 H 1.09003 * 109.47280 * 168.56333 * 20 18 17 43 43 H 1.08997 * 109.47381 * 299.99730 * 21 20 18 44 44 H 1.08995 * 109.47505 * 59.99972 * 21 20 18 45 45 H 0.97003 * 120.00162 * 359.97438 * 22 21 20 46 46 H 0.97006 * 119.99887 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8296 -1.9204 -0.7103 6 6 3.0643 -3.0861 -1.3448 7 8 3.6270 -3.9942 -0.7613 8 6 2.6423 -3.2601 -2.7364 9 6 2.7015 -4.4310 -3.4542 10 6 2.2011 -4.1650 -4.7416 11 16 1.8748 -4.9250 -6.2954 12 6 1.2672 -3.4143 -6.9523 13 6 1.3268 -2.4532 -6.0383 14 6 1.8411 -2.8314 -4.7938 15 7 2.1176 -2.2773 -3.5494 16 1 1.9658 -1.3538 -3.2948 17 6 3.2815 -1.5369 0.6472 18 6 2.0692 -0.7721 1.2263 19 1 1.3208 -1.4693 1.6031 20 6 2.5113 0.1967 2.3249 21 6 2.9216 -0.5950 3.5682 22 7 3.3443 0.3326 4.6203 23 6 3.7588 -0.1503 5.8329 24 1 3.7736 -1.2150 6.0137 25 6 4.1598 0.7287 6.8297 26 7 4.1422 2.0261 6.6091 27 14 4.7245 0.0701 8.4840 28 1 4.6508 -1.4131 8.4776 29 1 6.1250 0.4954 8.7342 30 1 3.8459 0.6041 9.5555 31 1 -0.3635 -1.0276 0.0123 32 1 -0.3634 0.5244 0.8838 33 1 -0.3633 0.5032 -0.8960 34 1 2.7166 -0.1222 -1.8111 35 1 1.2352 -1.1173 -1.8377 36 1 3.0658 -5.3821 -3.0950 37 1 0.8970 -3.2850 -7.9586 38 1 0.9992 -1.4445 -6.2424 39 1 3.4979 -2.4224 1.2449 40 1 4.1540 -0.8859 0.5925 41 1 3.3590 0.7840 1.9720 42 1 1.6861 0.8636 2.5749 43 1 2.0739 -1.1823 3.9212 44 1 3.7467 -1.2620 3.3183 45 1 3.3314 1.2888 4.4578 46 1 4.4228 2.6403 7.3055 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104870914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:05 Heat of formation + Delta-G solvation = 28.815005 kcal Electronic energy + Delta-G solvation = -27234.671253 eV Core-core repulsion = 23443.993762 eV Total energy + Delta-G solvation = -3790.677491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.56728 -40.96217 -39.19507 -36.94135 -36.28268 -34.70394 -33.51309 -32.26956 -31.74750 -29.89153 -28.27819 -27.55586 -26.06599 -24.59482 -23.96337 -23.01196 -22.09419 -21.70863 -21.12496 -20.26818 -19.26564 -19.12113 -17.65813 -17.27761 -16.84577 -16.66618 -16.42880 -16.02131 -15.84260 -15.33129 -15.28742 -15.05830 -15.04909 -14.83819 -14.62807 -14.33801 -14.17489 -13.88714 -13.58061 -13.28083 -13.14612 -12.91865 -12.83954 -12.71746 -12.56874 -12.46960 -12.34547 -12.10766 -11.94590 -11.75564 -11.64680 -11.61989 -11.40742 -11.30833 -10.95269 -10.80825 -9.97382 -9.13926 -9.01857 -8.67329 -7.98112 -5.26601 -0.29575 0.56678 0.79465 1.15453 1.45776 1.46200 1.53537 1.56609 1.76511 1.91511 2.10410 2.53858 3.23317 3.35580 3.38889 3.59649 3.69432 3.79752 3.96624 3.97201 4.13186 4.21506 4.31142 4.36533 4.43286 4.46326 4.51732 4.55328 4.61876 4.73163 4.75032 4.76555 4.84423 4.88028 4.97949 5.02374 5.07561 5.10376 5.24026 5.33653 5.38099 5.38657 5.47148 5.48300 5.55042 6.22870 6.25424 6.30533 6.81708 7.31580 8.07591 8.31336 9.25421 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.027138 B = 0.001821 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.497770 B =15370.043203 C =16141.978971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.108 0.892 4 C 0.087 3.913 5 N -0.617 5.617 6 C 0.600 3.400 7 O -0.569 6.569 8 C -0.003 4.003 9 C -0.084 4.084 10 C -0.253 4.253 11 S 0.127 5.873 12 C -0.167 4.167 13 C -0.128 4.128 14 C 0.070 3.930 15 N -0.532 5.532 16 H 0.431 0.569 17 C 0.108 3.892 18 C -0.082 4.082 19 H 0.078 0.922 20 C -0.097 4.097 21 C 0.148 3.852 22 N -0.746 5.746 23 C -0.248 4.248 24 H 0.071 0.929 25 C -0.074 4.074 26 N -0.967 5.967 27 Si 0.972 3.028 28 H -0.270 1.270 29 H -0.291 1.291 30 H -0.290 1.290 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.149 0.851 37 H 0.208 0.792 38 H 0.172 0.828 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.014 0.986 44 H 0.015 0.985 45 H 0.376 0.624 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 -5.867 -33.653 35.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.126 0.874 4 C -0.035 4.035 5 N -0.349 5.349 6 C 0.391 3.609 7 O -0.448 6.448 8 C -0.118 4.118 9 C -0.116 4.116 10 C -0.372 4.372 11 S 0.386 5.614 12 C -0.303 4.303 13 C -0.160 4.160 14 C -0.050 4.050 15 N -0.141 5.141 16 H 0.277 0.723 17 C -0.014 4.014 18 C -0.102 4.102 19 H 0.096 0.904 20 C -0.136 4.136 21 C 0.021 3.979 22 N -0.389 5.389 23 C -0.380 4.380 24 H 0.089 0.911 25 C -0.267 4.267 26 N -0.618 5.618 27 Si 0.801 3.199 28 H -0.194 1.194 29 H -0.218 1.218 30 H -0.217 1.217 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.167 0.833 37 H 0.225 0.775 38 H 0.190 0.810 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.032 0.968 44 H 0.033 0.967 45 H 0.208 0.792 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.990 -7.828 -33.774 36.080 hybrid contribution 0.407 1.674 2.203 2.796 sum -9.583 -6.154 -31.572 33.563 Atomic orbital electron populations 1.21858 0.92850 1.01972 1.03320 1.22123 0.97336 1.00045 0.91461 0.87395 1.22733 0.95874 0.86867 0.97981 1.48725 1.53299 1.14761 1.18145 1.16811 0.78731 0.81032 0.84345 1.90866 1.45247 1.41366 1.67362 1.19883 1.10425 0.90129 0.91335 1.20518 1.02695 0.97585 0.90755 1.22944 1.15006 0.98543 1.00734 1.84016 1.65452 1.11615 1.00294 1.25748 1.05309 0.94463 1.04734 1.19213 1.05164 1.02988 0.88658 1.18893 1.05453 0.91830 0.88828 1.42475 1.51547 1.11615 1.08418 0.72331 1.22580 0.97798 0.99316 0.81730 1.22141 0.96398 0.96869 0.94823 0.90367 1.21544 1.01538 0.97460 0.93021 1.20858 0.95890 0.92626 0.88481 1.42572 1.79118 1.05511 1.11696 1.19661 1.34796 0.92341 0.91212 0.91112 1.25552 1.03329 0.95673 1.02115 1.69806 1.55680 1.01738 1.34537 0.85091 0.77197 0.77807 0.79781 1.19414 1.21827 1.21716 0.93247 0.92100 0.90086 0.88453 0.89270 0.83328 0.77489 0.81030 0.91677 0.89803 0.91156 0.90876 0.96831 0.96712 0.79223 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.90 71.98 0.64 -1.17 16 2 C -0.09 -1.32 3.17 -9.91 -0.03 -1.36 16 3 H 0.11 1.34 7.85 -2.39 -0.02 1.32 16 4 C 0.09 1.16 5.00 86.53 0.43 1.59 16 5 N -0.62 -13.80 3.29 -815.00 -2.68 -16.49 16 6 C 0.60 16.53 7.84 86.38 0.68 17.21 16 7 O -0.57 -20.57 17.06 -4.44 -0.08 -20.64 16 8 C 0.00 -0.08 6.81 40.15 0.27 0.20 16 9 C -0.08 -1.99 10.61 22.68 0.24 -1.75 16 10 C -0.25 -5.00 7.26 22.86 0.17 -4.83 16 11 S 0.13 1.76 23.31 -56.49 -1.32 0.44 16 12 C -0.17 -1.38 11.13 66.64 0.74 -0.64 16 13 C -0.13 -1.25 10.16 21.49 0.22 -1.03 16 14 C 0.07 1.13 7.67 38.40 0.29 1.43 16 15 N -0.53 -8.44 5.54 -177.13 -0.98 -9.42 16 16 H 0.43 4.29 5.40 -92.71 -0.50 3.79 16 17 C 0.11 2.72 5.94 86.61 0.51 3.23 16 18 C -0.08 -1.85 2.58 -9.70 -0.02 -1.87 16 19 H 0.08 1.90 7.86 -2.38 -0.02 1.89 16 20 C -0.10 -2.77 4.70 30.60 0.14 -2.63 16 21 C 0.15 5.89 6.15 86.38 0.53 6.42 16 22 N -0.75 -38.34 5.60 -343.46 -1.92 -40.27 16 23 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 24 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 25 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 26 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 27 Si 0.97 46.91 29.55 68.60 2.03 48.94 16 28 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 29 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 30 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 0.85 7.92 -2.39 -0.02 0.83 16 35 H 0.09 0.91 5.68 -2.38 -0.01 0.90 16 36 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 37 H 0.21 0.21 8.06 -2.91 -0.02 0.18 16 38 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 39 H 0.06 1.99 7.79 -2.38 -0.02 1.98 16 40 H 0.08 2.05 7.93 -2.39 -0.02 2.03 16 41 H 0.07 1.97 7.99 -2.39 -0.02 1.95 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.01 0.61 7.67 -2.39 -0.02 0.59 16 45 H 0.38 20.10 7.67 -92.71 -0.71 19.39 16 46 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -76.49 386.93 1.26 -75.24 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.20 Total: 23.71 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 6.13 Total: -2.46 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -5.31 Total: -125.22 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.08 Total: -20.64 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.32 Total: 0.44 kcal Total: -76.49 1.26 -75.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104870914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.050 kcal (2) G-P(sol) polarization free energy of solvation -76.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds