Wall clock time and date at job start Wed Apr 1 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45193 * 109.46884 * 2 1 4 4 C 1.34230 * 117.00264 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99586 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00509 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.70884 * 299.41717 * 6 4 3 8 8 C 1.53302 * 109.70965 * 178.78497 * 6 4 3 9 9 N 1.46830 * 109.39788 * 186.51795 * 8 6 4 10 10 C 1.46898 * 110.99934 * 189.75382 * 9 8 6 11 11 C 1.50701 * 109.47377 * 301.36631 * 10 9 8 12 12 C 1.38295 * 119.93296 * 89.99469 * 11 10 9 13 13 C 1.38108 * 120.07068 * 180.25416 * 12 11 10 14 14 C 1.38882 * 119.92594 * 359.47405 * 13 12 11 15 15 O 1.35746 * 120.06738 * 180.25103 * 14 13 12 16 16 C 1.34834 * 117.00303 * 174.74183 * 15 14 13 17 17 H 1.08003 * 119.99155 * 5.05889 * 16 15 14 18 18 C 1.38652 * 120.00189 * 185.05783 * 16 15 14 19 19 N 1.31551 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99829 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47177 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46962 * 120.00033 * 20 18 16 23 23 H 1.48499 * 109.47083 * 240.00124 * 20 18 16 24 24 C 1.38876 * 119.86349 * 0.53021 * 14 13 12 25 25 C 1.38100 * 119.93177 * 359.72088 * 24 14 13 26 26 C 1.46828 * 111.56119 * 65.39342 * 9 8 6 27 27 C 1.53305 * 109.39786 * 294.60971 * 26 9 8 28 28 C 1.51431 * 108.24443 * 53.79622 * 27 26 9 29 29 O 1.20756 * 121.11047 * 130.95003 * 28 27 26 30 30 H 1.09004 * 109.46726 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46780 * 299.99566 * 1 2 3 32 32 H 1.09000 * 109.47270 * 59.99690 * 1 2 3 33 33 H 1.09002 * 109.46780 * 240.00433 * 2 1 3 34 34 H 1.09000 * 109.47270 * 120.00310 * 2 1 3 35 35 H 1.09002 * 109.48255 * 66.54640 * 8 6 4 36 36 H 1.08991 * 109.48740 * 306.50240 * 8 6 4 37 37 H 1.08995 * 109.47264 * 181.36197 * 10 9 8 38 38 H 1.09003 * 109.46918 * 61.36250 * 10 9 8 39 39 H 1.08000 * 119.96838 * 359.97438 * 12 11 10 40 40 H 1.07994 * 120.03585 * 179.72629 * 13 12 11 41 41 H 0.97006 * 120.00187 * 180.02562 * 19 18 16 42 42 H 1.07996 * 120.03747 * 179.74433 * 24 14 13 43 43 H 1.07997 * 119.96862 * 180.02562 * 25 24 14 44 44 H 1.08998 * 109.48592 * 54.58570 * 26 9 8 45 45 H 1.09003 * 109.48116 * 174.62227 * 26 9 8 46 46 H 1.09000 * 109.70326 * 173.48466 * 27 26 9 47 47 H 1.08999 * 109.70652 * 294.10647 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.5950 3.4703 -0.8933 8 6 5.4516 2.8637 0.0298 9 7 6.0020 4.2158 0.1874 10 6 7.4576 4.2180 -0.0102 11 6 8.1010 3.2859 0.9840 12 6 8.2910 1.9551 0.6594 13 6 8.8756 1.0973 1.5703 14 6 9.2827 1.5749 2.8092 15 8 9.8622 0.7353 3.7048 16 6 10.3322 1.2842 4.8432 17 1 10.1662 2.3320 5.0459 18 6 11.0285 0.5036 5.7533 19 7 11.2310 -0.7724 5.5060 20 14 11.6802 1.2644 7.3300 21 1 11.3225 2.7051 7.3692 22 1 11.0782 0.5734 8.4986 23 1 13.1573 1.1191 7.3760 24 6 9.0905 2.9118 3.1322 25 6 8.5006 3.7634 2.2190 26 6 5.6469 4.7946 1.4893 27 6 4.1292 4.9993 1.5586 28 6 3.4577 3.6811 1.2354 29 8 2.5827 3.2374 1.9394 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 5.8129 2.4306 -0.9029 36 1 5.7694 2.2420 0.8667 37 1 7.8426 5.2271 0.1359 38 1 7.6873 3.8845 -1.0222 39 1 7.9778 1.5852 -0.3057 40 1 9.0196 0.0572 1.3179 41 1 11.7178 -1.3187 6.1429 42 1 9.4022 3.2853 4.0964 43 1 8.3512 4.8033 2.4694 44 1 5.9592 4.1184 2.2851 45 1 6.1493 5.7544 1.6096 46 1 3.8470 5.3195 2.5616 47 1 3.8266 5.7538 0.8325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137115594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:31 Heat of formation + Delta-G solvation = -117.916959 kcal Electronic energy + Delta-G solvation = -30752.345756 eV Core-core repulsion = 26480.259867 eV Total energy + Delta-G solvation = -4272.085889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.18920 -39.77676 -39.15354 -37.97760 -36.82709 -36.05279 -32.80306 -32.32560 -31.92363 -31.54169 -30.23677 -28.97694 -25.99433 -25.17659 -24.81285 -23.23949 -22.40007 -21.92948 -21.34946 -20.50805 -19.21388 -18.04730 -17.94259 -17.03876 -16.99123 -16.80230 -15.90949 -15.65552 -15.42064 -15.12324 -14.84734 -14.59429 -14.46068 -14.28614 -13.96251 -13.70389 -13.56497 -13.42154 -13.31413 -12.99866 -12.82937 -12.51966 -12.35931 -12.19282 -12.07311 -11.81399 -11.76197 -11.65221 -11.61074 -11.29412 -11.19539 -11.00995 -10.81193 -10.68781 -10.66364 -10.62201 -10.46174 -9.69926 -9.38665 -8.88739 -8.48132 -8.23986 -7.25585 -6.49856 -4.08835 1.62977 1.99645 2.15074 2.17960 2.40888 3.08981 3.10324 3.16081 3.62558 3.88196 3.92508 4.28655 4.48560 4.53299 4.65674 4.71976 4.76053 4.82688 4.90178 5.04408 5.05812 5.08847 5.19153 5.25021 5.36974 5.39014 5.49118 5.54219 5.55467 5.60876 5.66683 5.72970 5.76981 5.80928 5.86043 5.96569 6.14965 6.28289 6.33969 6.63282 6.78449 6.81375 6.87430 7.01319 7.17152 7.19480 7.30037 7.38528 7.57997 7.75775 7.94858 8.95545 9.65051 10.68006 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.002715 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.339806 B =10312.155650 C =11167.242893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.347 6.347 4 C 0.475 3.525 5 O -0.494 6.494 6 C -0.130 4.130 7 H 0.146 0.854 8 C 0.074 3.926 9 N -0.533 5.533 10 C 0.114 3.886 11 C -0.233 4.233 12 C -0.059 4.059 13 C -0.192 4.192 14 C 0.158 3.842 15 O -0.176 6.176 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.860 5.860 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.236 4.236 25 C -0.059 4.059 26 C 0.052 3.948 27 C -0.157 4.157 28 C 0.371 3.629 29 O -0.437 6.437 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.105 0.895 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.153 10.649 -12.567 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.263 6.263 4 C 0.316 3.684 5 O -0.380 6.380 6 C -0.150 4.150 7 H 0.164 0.836 8 C -0.054 4.054 9 N -0.256 5.256 10 C -0.012 4.012 11 C -0.235 4.235 12 C -0.078 4.078 13 C -0.211 4.211 14 C 0.103 3.897 15 O -0.079 6.079 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.256 4.256 25 C -0.078 4.078 26 C -0.077 4.077 27 C -0.195 4.195 28 C 0.244 3.756 29 O -0.308 6.308 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.123 0.877 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.116 0.884 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.485 9.934 -12.423 22.908 hybrid contribution 0.810 -0.352 1.394 1.650 sum -15.675 9.582 -11.029 21.428 Atomic orbital electron populations 1.21793 0.92575 1.02902 1.03543 1.23048 0.95425 0.80062 1.02697 1.86509 1.23843 1.32414 1.83543 1.22983 0.81050 0.91640 0.72724 1.90727 1.60372 1.42520 1.44423 1.21957 0.98928 0.91345 1.02765 0.83630 1.21906 0.88169 0.90988 1.04385 1.62233 1.12594 1.20035 1.30701 1.20913 0.84000 0.98583 0.97710 1.19892 1.10609 0.95448 0.97551 1.20527 0.96897 0.92612 0.97786 1.20234 1.07659 1.00257 0.92983 1.19419 0.91306 0.89399 0.89559 1.83983 1.64157 1.33415 1.26307 1.21380 1.34923 0.96124 0.94419 0.88994 1.25310 0.96388 0.95463 0.99361 1.70048 1.38044 1.05363 1.36022 0.85641 0.78732 0.78984 0.80032 1.19081 1.20092 1.20061 1.21149 1.08658 0.94120 1.01647 1.20598 0.96389 0.97930 0.92921 1.22158 0.93127 1.01124 0.91261 1.22369 0.96510 0.96027 1.04612 1.24553 0.80171 0.87397 0.83483 1.90475 1.25428 1.67140 1.47743 0.90229 0.91322 0.91591 0.91199 0.91069 0.88803 0.91685 0.90163 0.90221 0.87176 0.86572 0.91980 0.85621 0.87679 0.92845 0.89144 0.88386 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.35 -4.45 9.49 -44.60 -0.42 -4.87 16 4 C 0.47 6.51 6.90 36.01 0.25 6.75 16 5 O -0.49 -8.12 15.68 -18.75 -0.29 -8.41 16 6 C -0.13 -1.43 3.08 -92.40 -0.28 -1.72 16 7 H 0.15 1.15 8.14 -51.93 -0.42 0.73 16 8 C 0.07 0.88 3.11 -3.71 -0.01 0.87 16 9 N -0.53 -5.59 4.77 -235.80 -1.13 -6.71 16 10 C 0.11 1.29 5.52 -4.98 -0.03 1.26 16 11 C -0.23 -3.58 4.08 -104.57 -0.43 -4.00 16 12 C -0.06 -1.02 8.11 -39.61 -0.32 -1.34 16 13 C -0.19 -4.07 9.99 -39.39 -0.39 -4.46 16 14 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 15 O -0.18 -5.03 9.76 0.05 0.00 -5.03 16 16 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 17 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 20 Si 0.94 20.49 29.55 -169.99 -5.02 15.46 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 C -0.24 -4.99 9.17 -39.40 -0.36 -5.35 16 25 C -0.06 -1.00 8.21 -39.61 -0.33 -1.33 16 26 C 0.05 0.52 4.73 -3.71 -0.02 0.50 16 27 C -0.16 -1.39 6.35 -27.37 -0.17 -1.56 16 28 C 0.37 4.37 6.62 -28.31 -0.19 4.19 16 29 O -0.44 -6.58 16.45 -8.61 -0.14 -6.72 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 34 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 35 H 0.09 1.06 8.08 -51.93 -0.42 0.64 16 36 H 0.06 1.01 6.52 -51.93 -0.34 0.67 16 37 H 0.08 0.80 7.96 -51.93 -0.41 0.39 16 38 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.11 1.63 8.01 -52.49 -0.42 1.21 16 40 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 43 H 0.11 1.47 8.03 -52.49 -0.42 1.05 16 44 H 0.05 0.69 6.79 -51.93 -0.35 0.34 16 45 H 0.09 0.76 7.99 -51.93 -0.41 0.35 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -33.69 388.45 -8.84 -42.53 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.71 Total: 4.66 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.73 Total: -12.20 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: -0.37 Total: -31.26 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.86 Total: -25.04 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.69 -8.84 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.387 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds