Wall clock time and date at job start Wed Apr 1 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45193 * 109.46884 * 2 1 4 4 C 1.34230 * 117.00264 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99586 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00509 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.70884 * 299.41717 * 6 4 3 8 8 C 1.53302 * 109.70965 * 178.78497 * 6 4 3 9 9 N 1.46830 * 109.39788 * 186.51795 * 8 6 4 10 10 C 1.46898 * 110.99934 * 189.75382 * 9 8 6 11 11 C 1.50701 * 109.47377 * 301.36631 * 10 9 8 12 12 C 1.38295 * 119.93296 * 89.99469 * 11 10 9 13 13 C 1.38108 * 120.07068 * 180.25416 * 12 11 10 14 14 C 1.38882 * 119.92594 * 359.47405 * 13 12 11 15 15 O 1.35746 * 120.06738 * 180.25103 * 14 13 12 16 16 C 1.34834 * 117.00303 * 174.74183 * 15 14 13 17 17 H 1.08003 * 119.99155 * 5.05889 * 16 15 14 18 18 C 1.38652 * 120.00189 * 185.05783 * 16 15 14 19 19 N 1.31551 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99829 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47177 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46962 * 120.00033 * 20 18 16 23 23 H 1.48499 * 109.47083 * 240.00124 * 20 18 16 24 24 C 1.38876 * 119.86349 * 0.53021 * 14 13 12 25 25 C 1.38100 * 119.93177 * 359.72088 * 24 14 13 26 26 C 1.46828 * 111.56119 * 65.39342 * 9 8 6 27 27 C 1.53305 * 109.39786 * 294.60971 * 26 9 8 28 28 C 1.51431 * 108.24443 * 53.79622 * 27 26 9 29 29 O 1.20756 * 121.11047 * 130.95003 * 28 27 26 30 30 H 1.09004 * 109.46726 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46780 * 299.99566 * 1 2 3 32 32 H 1.09000 * 109.47270 * 59.99690 * 1 2 3 33 33 H 1.09002 * 109.46780 * 240.00433 * 2 1 3 34 34 H 1.09000 * 109.47270 * 120.00310 * 2 1 3 35 35 H 1.09002 * 109.48255 * 66.54640 * 8 6 4 36 36 H 1.08991 * 109.48740 * 306.50240 * 8 6 4 37 37 H 1.08995 * 109.47264 * 181.36197 * 10 9 8 38 38 H 1.09003 * 109.46918 * 61.36250 * 10 9 8 39 39 H 1.08000 * 119.96838 * 359.97438 * 12 11 10 40 40 H 1.07994 * 120.03585 * 179.72629 * 13 12 11 41 41 H 0.97006 * 120.00187 * 180.02562 * 19 18 16 42 42 H 1.07996 * 120.03747 * 179.74433 * 24 14 13 43 43 H 1.07997 * 119.96862 * 180.02562 * 25 24 14 44 44 H 1.08998 * 109.48592 * 54.58570 * 26 9 8 45 45 H 1.09003 * 109.48116 * 174.62227 * 26 9 8 46 46 H 1.09000 * 109.70326 * 173.48466 * 27 26 9 47 47 H 1.08999 * 109.70652 * 294.10647 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.5950 3.4703 -0.8933 8 6 5.4516 2.8637 0.0298 9 7 6.0020 4.2158 0.1874 10 6 7.4576 4.2180 -0.0102 11 6 8.1010 3.2859 0.9840 12 6 8.2910 1.9551 0.6594 13 6 8.8756 1.0973 1.5703 14 6 9.2827 1.5749 2.8092 15 8 9.8622 0.7353 3.7048 16 6 10.3322 1.2842 4.8432 17 1 10.1662 2.3320 5.0459 18 6 11.0285 0.5036 5.7533 19 7 11.2310 -0.7724 5.5060 20 14 11.6802 1.2644 7.3300 21 1 11.3225 2.7051 7.3692 22 1 11.0782 0.5734 8.4986 23 1 13.1573 1.1191 7.3760 24 6 9.0905 2.9118 3.1322 25 6 8.5006 3.7634 2.2190 26 6 5.6469 4.7946 1.4893 27 6 4.1292 4.9993 1.5586 28 6 3.4577 3.6811 1.2354 29 8 2.5827 3.2374 1.9394 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 5.8129 2.4306 -0.9029 36 1 5.7694 2.2420 0.8667 37 1 7.8426 5.2271 0.1359 38 1 7.6873 3.8845 -1.0222 39 1 7.9778 1.5852 -0.3057 40 1 9.0196 0.0572 1.3179 41 1 11.7178 -1.3187 6.1429 42 1 9.4022 3.2853 4.0964 43 1 8.3512 4.8033 2.4694 44 1 5.9592 4.1184 2.2851 45 1 6.1493 5.7544 1.6096 46 1 3.8470 5.3195 2.5616 47 1 3.8266 5.7538 0.8325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137115594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:29 Heat of formation + Delta-G solvation = -139.961400 kcal Electronic energy + Delta-G solvation = -30753.301675 eV Core-core repulsion = 26480.259867 eV Total energy + Delta-G solvation = -4273.041807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.20272 -41.03615 -40.48810 -39.30257 -37.96941 -37.43506 -34.42477 -33.63797 -32.92451 -32.37483 -31.76555 -30.33085 -27.65310 -26.48138 -25.89168 -24.11338 -23.51248 -23.39919 -22.43033 -21.83883 -20.16971 -19.88768 -18.98934 -18.81207 -17.98266 -17.84004 -16.91011 -16.66975 -16.46295 -16.39560 -16.15305 -16.04569 -15.87955 -15.52996 -15.36073 -14.99449 -14.89828 -14.64844 -14.40403 -14.33610 -13.92639 -13.70160 -13.62187 -13.28647 -13.12402 -12.96378 -12.95379 -12.64032 -12.60792 -12.51581 -12.44870 -12.34993 -12.23454 -12.12249 -11.96891 -11.73928 -11.60400 -11.19940 -10.83628 -10.61551 -9.79559 -9.49299 -8.94045 -8.51099 -6.19809 0.56534 0.62588 0.73155 0.94541 1.31567 1.40252 1.48354 1.50456 2.14209 2.68805 2.81309 2.98786 3.16873 3.35218 3.48705 3.64617 3.84250 3.92416 3.96333 4.00939 4.04864 4.06936 4.12152 4.19539 4.26560 4.40724 4.45800 4.52641 4.60474 4.67130 4.77369 4.79035 4.85966 4.89847 4.92266 4.97279 5.07082 5.09393 5.11816 5.14776 5.26580 5.35490 5.53487 5.67093 5.69471 5.90432 5.98888 6.01524 6.21277 6.28743 6.53776 6.93432 7.75104 8.72692 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.002715 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.339806 B =10312.155650 C =11167.242893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.351 6.351 4 C 0.469 3.531 5 O -0.532 6.532 6 C -0.126 4.126 7 H 0.187 0.813 8 C 0.077 3.923 9 N -0.510 5.510 10 C 0.114 3.886 11 C -0.198 4.198 12 C -0.055 4.055 13 C -0.213 4.213 14 C 0.113 3.887 15 O -0.237 6.237 16 C -0.413 4.413 17 H 0.103 0.897 18 C -0.026 4.026 19 N -0.923 5.923 20 Si 1.020 2.980 21 H -0.249 1.249 22 H -0.270 1.270 23 H -0.267 1.267 24 C -0.246 4.246 25 C -0.052 4.052 26 C 0.047 3.953 27 C -0.146 4.146 28 C 0.368 3.632 29 O -0.479 6.479 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.023 0.977 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.140 0.860 40 H 0.101 0.899 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.149 0.851 44 H 0.020 0.980 45 H 0.123 0.877 46 H 0.103 0.897 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.717 15.299 -14.660 27.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.267 6.267 4 C 0.312 3.688 5 O -0.422 6.422 6 C -0.145 4.145 7 H 0.204 0.796 8 C -0.052 4.052 9 N -0.232 5.232 10 C -0.012 4.012 11 C -0.200 4.200 12 C -0.073 4.073 13 C -0.233 4.233 14 C 0.062 3.938 15 O -0.143 6.143 16 C -0.489 4.489 17 H 0.120 0.880 18 C -0.223 4.223 19 N -0.561 5.561 20 Si 0.839 3.161 21 H -0.172 1.172 22 H -0.195 1.195 23 H -0.192 1.192 24 C -0.265 4.265 25 C -0.071 4.071 26 C -0.081 4.081 27 C -0.184 4.184 28 C 0.244 3.756 29 O -0.353 6.353 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.041 0.959 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.157 0.843 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.167 0.833 44 H 0.039 0.961 45 H 0.141 0.859 46 H 0.122 0.878 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.092 14.643 -14.572 27.461 hybrid contribution 1.048 -1.670 1.717 2.614 sum -17.044 12.973 -12.855 24.981 Atomic orbital electron populations 1.21805 0.90063 1.04417 1.03732 1.23305 0.97438 0.79200 1.02239 1.86518 1.23488 1.33596 1.83078 1.23620 0.81107 0.92481 0.71543 1.90712 1.61116 1.43995 1.46341 1.22086 0.98049 0.90000 1.04387 0.79572 1.21842 0.88970 0.91207 1.03180 1.62302 1.11630 1.18476 1.30772 1.21183 0.83860 0.99018 0.97174 1.20567 1.06577 0.95241 0.97646 1.20920 0.95297 0.93116 0.97982 1.20455 1.08951 1.00581 0.93298 1.19977 0.92752 0.90812 0.90211 1.83945 1.67218 1.35476 1.27687 1.21876 1.35276 0.96837 0.94873 0.87974 1.26651 0.96471 0.95903 1.03250 1.70201 1.40544 1.07357 1.38019 0.84510 0.78110 0.78767 0.74676 1.17181 1.19483 1.19166 1.21287 1.09357 0.93490 1.02406 1.21056 0.94409 0.99321 0.92285 1.22318 0.94327 1.01769 0.89706 1.22400 0.95019 0.94789 1.06160 1.25154 0.79335 0.88309 0.82814 1.90475 1.27595 1.68337 1.48910 0.88073 0.92001 0.90425 0.90491 0.92792 0.87762 0.95892 0.86863 0.88052 0.84256 0.88092 0.91841 0.86520 0.83328 0.96121 0.85851 0.87827 0.83453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 10.29 71.98 0.74 -1.28 16 2 C 0.05 1.09 6.19 71.98 0.45 1.54 16 3 O -0.35 -8.87 9.49 -46.31 -0.44 -9.31 16 4 C 0.47 12.64 6.90 71.24 0.49 13.14 16 5 O -0.53 -17.89 15.68 21.96 0.34 -17.54 16 6 C -0.13 -2.45 3.08 -11.95 -0.04 -2.49 16 7 H 0.19 2.08 8.14 -2.39 -0.02 2.06 16 8 C 0.08 1.61 3.11 86.42 0.27 1.88 16 9 N -0.51 -8.00 4.77 -899.95 -4.29 -12.30 16 10 C 0.11 1.89 5.52 85.56 0.47 2.36 16 11 C -0.20 -5.43 4.08 -19.83 -0.08 -5.51 16 12 C -0.05 -1.82 8.11 22.25 0.18 -1.63 16 13 C -0.21 -9.52 9.99 22.39 0.22 -9.29 16 14 C 0.11 5.77 6.65 22.58 0.15 5.92 16 15 O -0.24 -14.73 9.76 -22.74 -0.22 -14.95 16 16 C -0.41 -24.53 9.49 67.92 0.64 -23.89 16 17 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 18 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 19 N -0.92 -58.12 13.67 21.61 0.30 -57.83 16 20 Si 1.02 43.54 29.55 68.60 2.03 45.56 16 21 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 C -0.25 -10.55 9.17 22.39 0.21 -10.34 16 25 C -0.05 -1.62 8.21 22.25 0.18 -1.44 16 26 C 0.05 0.72 4.73 86.42 0.41 1.13 16 27 C -0.15 -1.93 6.35 30.18 0.19 -1.74 16 28 C 0.37 7.82 6.62 29.57 0.20 8.02 16 29 O -0.48 -14.11 16.45 12.53 0.21 -13.90 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16 34 H 0.05 1.30 8.13 -2.39 -0.02 1.29 16 35 H 0.10 2.00 8.08 -2.39 -0.02 1.98 16 36 H 0.02 0.69 6.52 -2.39 -0.02 0.67 16 37 H 0.11 1.34 7.96 -2.39 -0.02 1.32 16 38 H 0.10 1.41 8.08 -2.39 -0.02 1.39 16 39 H 0.14 3.81 8.01 -2.91 -0.02 3.78 16 40 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 42 H 0.12 5.12 5.64 -2.91 -0.02 5.11 16 43 H 0.15 3.36 8.03 -2.91 -0.02 3.34 16 44 H 0.02 0.47 6.79 -2.39 -0.02 0.45 16 45 H 0.12 1.20 7.99 -2.39 -0.02 1.18 16 46 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -84.35 388.45 4.05 -80.30 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.98 Total: 24.62 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 5.15 Total: -24.65 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -4.00 Total: -70.12 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: -0.11 Total: -55.70 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -84.35 4.05 -80.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.664 kcal (2) G-P(sol) polarization free energy of solvation -84.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds