Wall clock time and date at job start Wed Apr 1 2020 04:18:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.47197 * 2 1
4 4 C 1.52996 * 109.47267 * 240.00063 * 2 1 3
5 5 C 1.52997 * 109.47393 * 175.00406 * 4 2 1
6 6 H 1.08999 * 109.47510 * 54.99497 * 5 4 2
7 7 C 1.53001 * 109.47278 * 175.00038 * 5 4 2
8 8 N 1.46507 * 109.46767 * 294.99953 * 5 4 2
9 9 C 1.34776 * 119.99631 * 154.99978 * 8 5 4
10 10 O 1.21281 * 120.00265 * 359.97438 * 9 8 5
11 11 C 1.50708 * 119.99724 * 179.97438 * 9 8 5
12 12 C 1.50696 * 109.46959 * 179.97438 * 11 9 8
13 13 N 1.28730 * 121.08637 * 269.71710 * 12 11 9
14 14 S 1.69387 * 108.98872 * 180.27659 * 13 12 11
15 15 C 1.76517 * 96.11897 * 359.97438 * 14 13 12
16 16 C 1.38778 * 133.55816 * 179.97438 * 15 14 13
17 17 C 1.36720 * 119.75832 * 180.02562 * 16 15 14
18 18 C 1.38971 * 120.15279 * 0.02562 * 17 16 15
19 19 C 1.36045 * 121.15676 * 0.02562 * 18 17 16
20 20 C 1.40805 * 105.51752 * 0.02562 * 15 14 13
21 21 N 1.46503 * 109.46991 * 120.00311 * 2 1 3
22 22 C 1.36936 * 119.99862 * 275.00040 * 21 2 1
23 23 H 1.08009 * 120.00208 * 359.97438 * 22 21 2
24 24 C 1.38812 * 119.99963 * 180.02562 * 22 21 2
25 25 N 1.31614 * 120.00010 * 359.97438 * 24 22 21
26 26 Si 1.86806 * 119.99812 * 179.97438 * 24 22 21
27 27 H 1.48500 * 109.47256 * 60.00032 * 26 24 22
28 28 H 1.48504 * 109.46950 * 179.97438 * 26 24 22
29 29 H 1.48491 * 109.47022 * 299.99691 * 26 24 22
30 30 H 1.09008 * 109.47016 * 59.99990 * 1 2 3
31 31 H 1.09003 * 109.47458 * 179.97438 * 1 2 3
32 32 H 1.09004 * 109.47139 * 300.00281 * 1 2 3
33 33 H 1.09000 * 109.47232 * 55.00067 * 4 2 1
34 34 H 1.09002 * 109.47153 * 295.00524 * 4 2 1
35 35 H 1.09005 * 109.46791 * 179.97438 * 7 5 4
36 36 H 1.08997 * 109.47434 * 299.99854 * 7 5 4
37 37 H 1.08998 * 109.47283 * 60.00290 * 7 5 4
38 38 H 0.96995 * 120.00152 * 334.99513 * 8 5 4
39 39 H 1.09002 * 109.47028 * 60.00195 * 11 9 8
40 40 H 1.08994 * 109.47095 * 300.00023 * 11 9 8
41 41 H 1.08005 * 120.12012 * 359.97438 * 16 15 14
42 42 H 1.08001 * 119.92156 * 179.97438 * 17 16 15
43 43 H 1.07997 * 119.42200 * 179.97438 * 18 17 16
44 44 H 1.07996 * 119.89102 * 179.97438 * 19 18 17
45 45 H 0.96999 * 120.00012 * 95.00208 * 21 2 1
46 46 H 0.96998 * 120.00024 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5648 -0.6134 -1.3136
6 1 3.9954 -0.9923 -0.3868
7 6 4.0851 -1.4383 -2.4924
8 7 3.9479 0.7894 -1.4924
9 6 5.1612 1.2134 -1.0866
10 8 5.9356 0.4340 -0.5730
11 6 5.5556 2.6563 -1.2709
12 6 6.9489 2.8682 -0.7375
13 7 7.1469 3.2075 0.4884
14 16 8.8121 3.3688 0.7536
15 6 9.3054 2.9542 -0.8897
16 6 10.5368 2.8516 -1.5214
17 6 10.5952 2.5007 -2.8415
18 6 9.4261 2.2480 -3.5490
19 6 8.2074 2.3431 -2.9517
20 6 8.1099 2.7022 -1.5897
21 7 2.0183 -0.6907 1.1962
22 6 2.1490 -0.0076 2.3758
23 1 1.8925 1.0405 2.4242
24 6 2.6122 -0.6619 3.5090
25 7 2.9252 -1.9389 3.4499
26 14 2.7912 0.2702 5.1180
27 1 1.4690 0.8070 5.5289
28 1 3.3001 -0.6483 6.1681
29 1 3.7464 1.3925 4.9362
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 -0.3633 0.5139 0.8900
33 1 1.6054 -0.2617 -2.1369
34 1 1.7516 -1.7715 -1.2056
35 1 5.1715 -1.3611 -2.5385
36 1 3.8001 -2.4820 -2.3595
37 1 3.6547 -1.0593 -3.4193
38 1 3.3285 1.4128 -1.9028
39 1 4.8584 3.2955 -0.7292
40 1 5.5300 2.9073 -2.3313
41 1 11.4457 3.0491 -0.9723
42 1 11.5521 2.4205 -3.3358
43 1 9.4859 1.9721 -4.5914
44 1 7.3119 2.1427 -3.5211
45 1 2.2490 -1.6318 1.1526
46 1 3.2492 -2.3960 4.2417
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001146496235.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:18:03
Heat of formation + Delta-G solvation = 16.274196 kcal
Electronic energy + Delta-G solvation = -28035.576482 eV
Core-core repulsion = 24244.355181 eV
Total energy + Delta-G solvation = -3791.221301 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 347.141 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-40.35420 -39.34057 -37.18140 -36.45170 -34.40253 -32.22695 -31.66874 -31.09175
-30.62152 -29.39596 -28.53749 -26.30271 -23.89002 -23.55132 -23.12237 -21.85779
-20.55847 -19.81261 -19.65602 -18.67799 -17.33308 -16.85275 -16.57841 -16.06374
-15.49061 -15.26694 -15.01827 -14.66875 -14.44072 -14.15434 -13.94556 -13.70351
-13.55531 -13.37896 -13.02363 -12.72599 -12.46202 -12.21140 -12.15405 -12.01643
-11.87465 -11.82041 -11.70785 -11.57098 -10.99498 -10.90136 -10.76002 -10.57193
-10.55267 -10.39387 -10.20023 -10.03803 -9.86751 -9.57377 -9.54416 -9.14742
-8.81626 -8.70398 -7.98196 -6.86546 -5.67130 -2.94972 0.36501 0.95427
1.33734 1.73417 1.97286 2.91541 3.32345 3.51177 3.55332 3.56189
3.57334 4.11226 4.28805 4.61836 4.68458 4.73509 4.94677 4.99384
5.05211 5.07688 5.18187 5.23864 5.43220 5.44525 5.51872 5.60504
5.66802 5.70354 5.84384 5.91075 5.94053 5.95509 6.03727 6.11803
6.15641 6.31322 6.36992 6.45121 6.46518 6.57542 6.59353 6.74235
6.83396 6.95234 7.10462 7.77478 7.77722 8.51133 8.53161 9.62758
10.19665 10.53505 11.55580
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.010636 B = 0.003387 C = 0.002784
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2631.843297 B = 8265.483450 C =10056.314637
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.172 3.828
3 H 0.045 0.955
4 C -0.130 4.130
5 C 0.144 3.856
6 H 0.105 0.895
7 C -0.160 4.160
8 N -0.715 5.715
9 C 0.521 3.479
10 O -0.521 6.521
11 C -0.081 4.081
12 C 0.179 3.821
13 N -0.419 5.419
14 S 0.189 5.811
15 C -0.136 4.136
16 C -0.081 4.081
17 C -0.086 4.086
18 C -0.126 4.126
19 C -0.048 4.048
20 C -0.117 4.117
21 N -0.720 5.720
22 C -0.235 4.235
23 H 0.066 0.934
24 C -0.010 4.010
25 N -0.932 5.932
26 Si 0.901 3.099
27 H -0.287 1.287
28 H -0.291 1.291
29 H -0.286 1.286
30 H 0.033 0.967
31 H 0.045 0.955
32 H 0.052 0.948
33 H 0.061 0.939
34 H 0.075 0.925
35 H 0.055 0.945
36 H 0.063 0.937
37 H 0.050 0.950
38 H 0.395 0.605
39 H 0.119 0.881
40 H 0.114 0.886
41 H 0.132 0.868
42 H 0.134 0.866
43 H 0.131 0.869
44 H 0.130 0.870
45 H 0.382 0.618
46 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.473 10.541 -20.284 25.144
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.062 3.938
3 H 0.063 0.937
4 C -0.169 4.169
5 C 0.040 3.960
6 H 0.123 0.877
7 C -0.218 4.218
8 N -0.366 5.366
9 C 0.304 3.696
10 O -0.396 6.396
11 C -0.126 4.126
12 C -0.012 4.012
13 N -0.230 5.230
14 S 0.345 5.655
15 C -0.256 4.256
16 C -0.104 4.104
17 C -0.109 4.109
18 C -0.146 4.146
19 C -0.070 4.070
20 C -0.129 4.129
21 N -0.362 5.362
22 C -0.366 4.366
23 H 0.084 0.916
24 C -0.206 4.206
25 N -0.580 5.580
26 Si 0.732 3.268
27 H -0.214 1.214
28 H -0.217 1.217
29 H -0.213 1.213
30 H 0.053 0.947
31 H 0.064 0.936
32 H 0.071 0.929
33 H 0.080 0.920
34 H 0.093 0.907
35 H 0.074 0.926
36 H 0.082 0.918
37 H 0.069 0.931
38 H 0.228 0.772
39 H 0.137 0.863
40 H 0.132 0.868
41 H 0.150 0.850
42 H 0.151 0.849
43 H 0.149 0.851
44 H 0.148 0.852
45 H 0.216 0.784
46 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 11.033 10.706 -17.390 23.211
hybrid contribution -0.347 -0.066 -0.787 0.862
sum 10.686 10.640 -18.177 23.618
Atomic orbital electron populations
1.22464 0.99593 1.00774 0.99731 1.20217 0.91529 0.95538 0.86564
0.93658 1.22165 0.93689 1.02221 0.98820 1.21035 0.95102 0.79970
0.99872 0.87686 1.22176 1.01435 1.00225 0.97995 1.45889 1.16128
1.11784 1.62813 1.19974 0.82396 0.88829 0.78429 1.90776 1.51015
1.56145 1.41698 1.20508 0.91788 0.96931 1.03342 1.21803 0.95365
0.95195 0.88791 1.75795 1.09713 1.19869 1.17585 1.84876 0.99695
1.71769 1.09187 1.23545 0.97430 1.05029 0.99633 1.19981 0.94799
1.00732 0.94873 1.21023 0.98863 0.97285 0.93694 1.20733 0.92049
1.01260 1.00594 1.20652 0.98594 0.96157 0.91607 1.20108 0.90774
1.05908 0.96145 1.42379 1.77990 1.10524 1.05262 1.19096 1.36568
0.93610 0.87350 0.91596 1.24674 1.02101 0.95910 0.97934 1.69630
1.50875 1.08629 1.28877 0.86355 0.77667 0.78834 0.83914 1.21408
1.21728 1.21264 0.94748 0.93566 0.92926 0.92041 0.90660 0.92600
0.91770 0.93132 0.77183 0.86300 0.86790 0.84980 0.84856 0.85102
0.85189 0.78379 0.93587
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.88 9.49 37.16 0.35 -2.53 16
2 C 0.17 3.23 2.84 -67.93 -0.19 3.04 16
3 H 0.05 0.87 7.56 -51.93 -0.39 0.48 16
4 C -0.13 -1.94 4.29 -26.73 -0.11 -2.05 16
5 C 0.14 2.28 2.52 -67.93 -0.17 2.11 16
6 H 0.11 2.26 7.05 -51.93 -0.37 1.89 16
7 C -0.16 -2.12 9.48 37.16 0.35 -1.76 16
8 N -0.71 -9.82 4.45 -53.80 -0.24 -10.06 16
9 C 0.52 8.31 7.79 -10.98 -0.09 8.22 16
10 O -0.52 -11.11 15.70 5.56 0.09 -11.03 16
11 C -0.08 -0.98 5.97 -29.03 -0.17 -1.15 16
12 C 0.18 2.67 5.37 -81.23 -0.44 2.23 16
13 N -0.42 -7.28 11.84 34.00 0.40 -6.88 16
14 S 0.19 2.79 23.86 -107.50 -2.56 0.23 16
15 C -0.14 -1.77 6.71 -38.41 -0.26 -2.03 16
16 C -0.08 -0.80 10.02 -39.93 -0.40 -1.20 16
17 C -0.09 -0.69 10.01 -39.86 -0.40 -1.09 16
18 C -0.13 -1.03 9.92 -40.10 -0.40 -1.43 16
19 C -0.05 -0.48 9.72 -39.24 -0.38 -0.86 16
20 C -0.12 -1.55 6.04 -105.14 -0.64 -2.18 16
21 N -0.72 -17.88 4.49 -53.43 -0.24 -18.12 16
22 C -0.23 -6.67 9.93 -15.06 -0.15 -6.82 16
23 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16
24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16
25 N -0.93 -29.14 13.06 55.49 0.72 -28.41 16
26 Si 0.90 23.68 29.55 -169.99 -5.02 18.66 16
27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
28 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16
29 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16
30 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16
31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16
35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16
36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
38 H 0.39 4.01 8.60 -40.82 -0.35 3.66 16
39 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16
40 H 0.11 0.85 7.55 -51.93 -0.39 0.46 16
41 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16
42 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16
43 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16
44 H 0.13 0.99 7.65 -52.49 -0.40 0.59 16
45 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16
46 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16
LS Contribution 399.67 15.07 6.02 6.02
Total: -1.00 -37.24 399.67 -10.86 -48.09
By element:
Atomic # 1 Polarization: 16.23 SS G_CDS: -6.84 Total: 9.39 kcal
Atomic # 6 Polarization: -4.71 SS G_CDS: -3.19 Total: -7.89 kcal
Atomic # 7 Polarization: -64.12 SS G_CDS: 0.65 Total: -63.48 kcal
Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal
Atomic # 14 Polarization: 23.68 SS G_CDS: -5.02 Total: 18.66 kcal
Atomic # 16 Polarization: 2.79 SS G_CDS: -2.56 Total: 0.23 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -37.24 -10.86 -48.09 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001146496235.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.368 kcal
(2) G-P(sol) polarization free energy of solvation -37.237 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.131 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.094 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.274 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds