Wall clock time and date at job start Wed Apr 1 2020 04:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47197 * 2 1 4 4 C 1.52996 * 109.47267 * 240.00063 * 2 1 3 5 5 C 1.52997 * 109.47393 * 175.00406 * 4 2 1 6 6 H 1.08999 * 109.47510 * 54.99497 * 5 4 2 7 7 C 1.53001 * 109.47278 * 175.00038 * 5 4 2 8 8 N 1.46507 * 109.46767 * 294.99953 * 5 4 2 9 9 C 1.34776 * 119.99631 * 154.99978 * 8 5 4 10 10 O 1.21281 * 120.00265 * 359.97438 * 9 8 5 11 11 C 1.50708 * 119.99724 * 179.97438 * 9 8 5 12 12 C 1.50696 * 109.46959 * 179.97438 * 11 9 8 13 13 N 1.28730 * 121.08637 * 269.71710 * 12 11 9 14 14 S 1.69387 * 108.98872 * 180.27659 * 13 12 11 15 15 C 1.76517 * 96.11897 * 359.97438 * 14 13 12 16 16 C 1.38778 * 133.55816 * 179.97438 * 15 14 13 17 17 C 1.36720 * 119.75832 * 180.02562 * 16 15 14 18 18 C 1.38971 * 120.15279 * 0.02562 * 17 16 15 19 19 C 1.36045 * 121.15676 * 0.02562 * 18 17 16 20 20 C 1.40805 * 105.51752 * 0.02562 * 15 14 13 21 21 N 1.46503 * 109.46991 * 120.00311 * 2 1 3 22 22 C 1.36936 * 119.99862 * 275.00040 * 21 2 1 23 23 H 1.08009 * 120.00208 * 359.97438 * 22 21 2 24 24 C 1.38812 * 119.99963 * 180.02562 * 22 21 2 25 25 N 1.31614 * 120.00010 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99812 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47256 * 60.00032 * 26 24 22 28 28 H 1.48504 * 109.46950 * 179.97438 * 26 24 22 29 29 H 1.48491 * 109.47022 * 299.99691 * 26 24 22 30 30 H 1.09008 * 109.47016 * 59.99990 * 1 2 3 31 31 H 1.09003 * 109.47458 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47139 * 300.00281 * 1 2 3 33 33 H 1.09000 * 109.47232 * 55.00067 * 4 2 1 34 34 H 1.09002 * 109.47153 * 295.00524 * 4 2 1 35 35 H 1.09005 * 109.46791 * 179.97438 * 7 5 4 36 36 H 1.08997 * 109.47434 * 299.99854 * 7 5 4 37 37 H 1.08998 * 109.47283 * 60.00290 * 7 5 4 38 38 H 0.96995 * 120.00152 * 334.99513 * 8 5 4 39 39 H 1.09002 * 109.47028 * 60.00195 * 11 9 8 40 40 H 1.08994 * 109.47095 * 300.00023 * 11 9 8 41 41 H 1.08005 * 120.12012 * 359.97438 * 16 15 14 42 42 H 1.08001 * 119.92156 * 179.97438 * 17 16 15 43 43 H 1.07997 * 119.42200 * 179.97438 * 18 17 16 44 44 H 1.07996 * 119.89102 * 179.97438 * 19 18 17 45 45 H 0.96999 * 120.00012 * 95.00208 * 21 2 1 46 46 H 0.96998 * 120.00024 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.9954 -0.9923 -0.3868 7 6 4.0851 -1.4383 -2.4924 8 7 3.9479 0.7894 -1.4924 9 6 5.1612 1.2134 -1.0866 10 8 5.9356 0.4340 -0.5730 11 6 5.5556 2.6563 -1.2709 12 6 6.9489 2.8682 -0.7375 13 7 7.1469 3.2075 0.4884 14 16 8.8121 3.3688 0.7536 15 6 9.3054 2.9542 -0.8897 16 6 10.5368 2.8516 -1.5214 17 6 10.5952 2.5007 -2.8415 18 6 9.4261 2.2480 -3.5490 19 6 8.2074 2.3431 -2.9517 20 6 8.1099 2.7022 -1.5897 21 7 2.0183 -0.6907 1.1962 22 6 2.1490 -0.0076 2.3758 23 1 1.8925 1.0405 2.4242 24 6 2.6122 -0.6619 3.5090 25 7 2.9252 -1.9389 3.4499 26 14 2.7912 0.2702 5.1180 27 1 1.4690 0.8070 5.5289 28 1 3.3001 -0.6483 6.1681 29 1 3.7464 1.3925 4.9362 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -0.2617 -2.1369 34 1 1.7516 -1.7715 -1.2056 35 1 5.1715 -1.3611 -2.5385 36 1 3.8001 -2.4820 -2.3595 37 1 3.6547 -1.0593 -3.4193 38 1 3.3285 1.4128 -1.9028 39 1 4.8584 3.2955 -0.7292 40 1 5.5300 2.9073 -2.3313 41 1 11.4457 3.0491 -0.9723 42 1 11.5521 2.4205 -3.3358 43 1 9.4859 1.9721 -4.5914 44 1 7.3119 2.1427 -3.5211 45 1 2.2490 -1.6318 1.1526 46 1 3.2492 -2.3960 4.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146496235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:03 Heat of formation + Delta-G solvation = 16.274196 kcal Electronic energy + Delta-G solvation = -28035.576482 eV Core-core repulsion = 24244.355181 eV Total energy + Delta-G solvation = -3791.221301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.35420 -39.34057 -37.18140 -36.45170 -34.40253 -32.22695 -31.66874 -31.09175 -30.62152 -29.39596 -28.53749 -26.30271 -23.89002 -23.55132 -23.12237 -21.85779 -20.55847 -19.81261 -19.65602 -18.67799 -17.33308 -16.85275 -16.57841 -16.06374 -15.49061 -15.26694 -15.01827 -14.66875 -14.44072 -14.15434 -13.94556 -13.70351 -13.55531 -13.37896 -13.02363 -12.72599 -12.46202 -12.21140 -12.15405 -12.01643 -11.87465 -11.82041 -11.70785 -11.57098 -10.99498 -10.90136 -10.76002 -10.57193 -10.55267 -10.39387 -10.20023 -10.03803 -9.86751 -9.57377 -9.54416 -9.14742 -8.81626 -8.70398 -7.98196 -6.86546 -5.67130 -2.94972 0.36501 0.95427 1.33734 1.73417 1.97286 2.91541 3.32345 3.51177 3.55332 3.56189 3.57334 4.11226 4.28805 4.61836 4.68458 4.73509 4.94677 4.99384 5.05211 5.07688 5.18187 5.23864 5.43220 5.44525 5.51872 5.60504 5.66802 5.70354 5.84384 5.91075 5.94053 5.95509 6.03727 6.11803 6.15641 6.31322 6.36992 6.45121 6.46518 6.57542 6.59353 6.74235 6.83396 6.95234 7.10462 7.77478 7.77722 8.51133 8.53161 9.62758 10.19665 10.53505 11.55580 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003387 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.843297 B = 8265.483450 C =10056.314637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.144 3.856 6 H 0.105 0.895 7 C -0.160 4.160 8 N -0.715 5.715 9 C 0.521 3.479 10 O -0.521 6.521 11 C -0.081 4.081 12 C 0.179 3.821 13 N -0.419 5.419 14 S 0.189 5.811 15 C -0.136 4.136 16 C -0.081 4.081 17 C -0.086 4.086 18 C -0.126 4.126 19 C -0.048 4.048 20 C -0.117 4.117 21 N -0.720 5.720 22 C -0.235 4.235 23 H 0.066 0.934 24 C -0.010 4.010 25 N -0.932 5.932 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.395 0.605 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.382 0.618 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.473 10.541 -20.284 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.040 3.960 6 H 0.123 0.877 7 C -0.218 4.218 8 N -0.366 5.366 9 C 0.304 3.696 10 O -0.396 6.396 11 C -0.126 4.126 12 C -0.012 4.012 13 N -0.230 5.230 14 S 0.345 5.655 15 C -0.256 4.256 16 C -0.104 4.104 17 C -0.109 4.109 18 C -0.146 4.146 19 C -0.070 4.070 20 C -0.129 4.129 21 N -0.362 5.362 22 C -0.366 4.366 23 H 0.084 0.916 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.732 3.268 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.228 0.772 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.216 0.784 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.033 10.706 -17.390 23.211 hybrid contribution -0.347 -0.066 -0.787 0.862 sum 10.686 10.640 -18.177 23.618 Atomic orbital electron populations 1.22464 0.99593 1.00774 0.99731 1.20217 0.91529 0.95538 0.86564 0.93658 1.22165 0.93689 1.02221 0.98820 1.21035 0.95102 0.79970 0.99872 0.87686 1.22176 1.01435 1.00225 0.97995 1.45889 1.16128 1.11784 1.62813 1.19974 0.82396 0.88829 0.78429 1.90776 1.51015 1.56145 1.41698 1.20508 0.91788 0.96931 1.03342 1.21803 0.95365 0.95195 0.88791 1.75795 1.09713 1.19869 1.17585 1.84876 0.99695 1.71769 1.09187 1.23545 0.97430 1.05029 0.99633 1.19981 0.94799 1.00732 0.94873 1.21023 0.98863 0.97285 0.93694 1.20733 0.92049 1.01260 1.00594 1.20652 0.98594 0.96157 0.91607 1.20108 0.90774 1.05908 0.96145 1.42379 1.77990 1.10524 1.05262 1.19096 1.36568 0.93610 0.87350 0.91596 1.24674 1.02101 0.95910 0.97934 1.69630 1.50875 1.08629 1.28877 0.86355 0.77667 0.78834 0.83914 1.21408 1.21728 1.21264 0.94748 0.93566 0.92926 0.92041 0.90660 0.92600 0.91770 0.93132 0.77183 0.86300 0.86790 0.84980 0.84856 0.85102 0.85189 0.78379 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.49 37.16 0.35 -2.53 16 2 C 0.17 3.23 2.84 -67.93 -0.19 3.04 16 3 H 0.05 0.87 7.56 -51.93 -0.39 0.48 16 4 C -0.13 -1.94 4.29 -26.73 -0.11 -2.05 16 5 C 0.14 2.28 2.52 -67.93 -0.17 2.11 16 6 H 0.11 2.26 7.05 -51.93 -0.37 1.89 16 7 C -0.16 -2.12 9.48 37.16 0.35 -1.76 16 8 N -0.71 -9.82 4.45 -53.80 -0.24 -10.06 16 9 C 0.52 8.31 7.79 -10.98 -0.09 8.22 16 10 O -0.52 -11.11 15.70 5.56 0.09 -11.03 16 11 C -0.08 -0.98 5.97 -29.03 -0.17 -1.15 16 12 C 0.18 2.67 5.37 -81.23 -0.44 2.23 16 13 N -0.42 -7.28 11.84 34.00 0.40 -6.88 16 14 S 0.19 2.79 23.86 -107.50 -2.56 0.23 16 15 C -0.14 -1.77 6.71 -38.41 -0.26 -2.03 16 16 C -0.08 -0.80 10.02 -39.93 -0.40 -1.20 16 17 C -0.09 -0.69 10.01 -39.86 -0.40 -1.09 16 18 C -0.13 -1.03 9.92 -40.10 -0.40 -1.43 16 19 C -0.05 -0.48 9.72 -39.24 -0.38 -0.86 16 20 C -0.12 -1.55 6.04 -105.14 -0.64 -2.18 16 21 N -0.72 -17.88 4.49 -53.43 -0.24 -18.12 16 22 C -0.23 -6.67 9.93 -15.06 -0.15 -6.82 16 23 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -29.14 13.06 55.49 0.72 -28.41 16 26 Si 0.90 23.68 29.55 -169.99 -5.02 18.66 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 29 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 30 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.39 4.01 8.60 -40.82 -0.35 3.66 16 39 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.11 0.85 7.55 -51.93 -0.39 0.46 16 41 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.13 0.99 7.65 -52.49 -0.40 0.59 16 45 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 46 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -37.24 399.67 -10.86 -48.09 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.84 Total: 9.39 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -3.19 Total: -7.89 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: 0.65 Total: -63.48 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.02 Total: 18.66 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.56 Total: 0.23 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.24 -10.86 -48.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146496235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.368 kcal (2) G-P(sol) polarization free energy of solvation -37.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds