Wall clock time and date at job start Wed Apr 1 2020 04:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47197 * 2 1 4 4 C 1.52996 * 109.47267 * 240.00063 * 2 1 3 5 5 C 1.52997 * 109.47393 * 175.00406 * 4 2 1 6 6 H 1.08999 * 109.47510 * 54.99497 * 5 4 2 7 7 C 1.53001 * 109.47278 * 175.00038 * 5 4 2 8 8 N 1.46507 * 109.46767 * 294.99953 * 5 4 2 9 9 C 1.34776 * 119.99631 * 154.99978 * 8 5 4 10 10 O 1.21281 * 120.00265 * 359.97438 * 9 8 5 11 11 C 1.50708 * 119.99724 * 179.97438 * 9 8 5 12 12 C 1.50696 * 109.46959 * 179.97438 * 11 9 8 13 13 N 1.28730 * 121.08637 * 269.71710 * 12 11 9 14 14 S 1.69387 * 108.98872 * 180.27659 * 13 12 11 15 15 C 1.76517 * 96.11897 * 359.97438 * 14 13 12 16 16 C 1.38778 * 133.55816 * 179.97438 * 15 14 13 17 17 C 1.36720 * 119.75832 * 180.02562 * 16 15 14 18 18 C 1.38971 * 120.15279 * 0.02562 * 17 16 15 19 19 C 1.36045 * 121.15676 * 0.02562 * 18 17 16 20 20 C 1.40805 * 105.51752 * 0.02562 * 15 14 13 21 21 N 1.46503 * 109.46991 * 120.00311 * 2 1 3 22 22 C 1.36936 * 119.99862 * 275.00040 * 21 2 1 23 23 H 1.08009 * 120.00208 * 359.97438 * 22 21 2 24 24 C 1.38812 * 119.99963 * 180.02562 * 22 21 2 25 25 N 1.31614 * 120.00010 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99812 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47256 * 60.00032 * 26 24 22 28 28 H 1.48504 * 109.46950 * 179.97438 * 26 24 22 29 29 H 1.48491 * 109.47022 * 299.99691 * 26 24 22 30 30 H 1.09008 * 109.47016 * 59.99990 * 1 2 3 31 31 H 1.09003 * 109.47458 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47139 * 300.00281 * 1 2 3 33 33 H 1.09000 * 109.47232 * 55.00067 * 4 2 1 34 34 H 1.09002 * 109.47153 * 295.00524 * 4 2 1 35 35 H 1.09005 * 109.46791 * 179.97438 * 7 5 4 36 36 H 1.08997 * 109.47434 * 299.99854 * 7 5 4 37 37 H 1.08998 * 109.47283 * 60.00290 * 7 5 4 38 38 H 0.96995 * 120.00152 * 334.99513 * 8 5 4 39 39 H 1.09002 * 109.47028 * 60.00195 * 11 9 8 40 40 H 1.08994 * 109.47095 * 300.00023 * 11 9 8 41 41 H 1.08005 * 120.12012 * 359.97438 * 16 15 14 42 42 H 1.08001 * 119.92156 * 179.97438 * 17 16 15 43 43 H 1.07997 * 119.42200 * 179.97438 * 18 17 16 44 44 H 1.07996 * 119.89102 * 179.97438 * 19 18 17 45 45 H 0.96999 * 120.00012 * 95.00208 * 21 2 1 46 46 H 0.96998 * 120.00024 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.9954 -0.9923 -0.3868 7 6 4.0851 -1.4383 -2.4924 8 7 3.9479 0.7894 -1.4924 9 6 5.1612 1.2134 -1.0866 10 8 5.9356 0.4340 -0.5730 11 6 5.5556 2.6563 -1.2709 12 6 6.9489 2.8682 -0.7375 13 7 7.1469 3.2075 0.4884 14 16 8.8121 3.3688 0.7536 15 6 9.3054 2.9542 -0.8897 16 6 10.5368 2.8516 -1.5214 17 6 10.5952 2.5007 -2.8415 18 6 9.4261 2.2480 -3.5490 19 6 8.2074 2.3431 -2.9517 20 6 8.1099 2.7022 -1.5897 21 7 2.0183 -0.6907 1.1962 22 6 2.1490 -0.0076 2.3758 23 1 1.8925 1.0405 2.4242 24 6 2.6122 -0.6619 3.5090 25 7 2.9252 -1.9389 3.4499 26 14 2.7912 0.2702 5.1180 27 1 1.4690 0.8070 5.5289 28 1 3.3001 -0.6483 6.1681 29 1 3.7464 1.3925 4.9362 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -0.2617 -2.1369 34 1 1.7516 -1.7715 -1.2056 35 1 5.1715 -1.3611 -2.5385 36 1 3.8001 -2.4820 -2.3595 37 1 3.6547 -1.0593 -3.4193 38 1 3.3285 1.4128 -1.9028 39 1 4.8584 3.2955 -0.7292 40 1 5.5300 2.9073 -2.3313 41 1 11.4457 3.0491 -0.9723 42 1 11.5521 2.4205 -3.3358 43 1 9.4859 1.9721 -4.5914 44 1 7.3119 2.1427 -3.5211 45 1 2.2490 -1.6318 1.1526 46 1 3.2492 -2.3960 4.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146496235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:02 Heat of formation + Delta-G solvation = -9.540452 kcal Electronic energy + Delta-G solvation = -28036.695890 eV Core-core repulsion = 24244.355181 eV Total energy + Delta-G solvation = -3792.340709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.37328 -40.43491 -38.43611 -37.63250 -36.01988 -34.05026 -32.80110 -32.08845 -31.47181 -30.65045 -30.22297 -27.56603 -25.68702 -24.76280 -23.91091 -22.96550 -21.85303 -21.16248 -20.87156 -19.57476 -19.30654 -18.19588 -17.43137 -17.26867 -16.71733 -16.30119 -16.17908 -16.01882 -15.70316 -15.56594 -15.35728 -14.95448 -14.69352 -14.55456 -14.30414 -14.24900 -13.61100 -13.44880 -13.30144 -13.12956 -13.08198 -12.93609 -12.86951 -12.78480 -12.66087 -12.59329 -12.27931 -12.22188 -11.81444 -11.77377 -11.61227 -11.55778 -11.40227 -11.02810 -10.92499 -10.74406 -9.97811 -9.95780 -8.98245 -8.95834 -7.95067 -5.19203 -0.51606 0.19903 0.36465 0.71091 1.02274 1.37069 1.42049 1.45586 1.69397 2.33638 2.52989 2.67492 3.18119 3.39890 3.45087 3.78378 3.86983 3.98217 4.03570 4.06431 4.19173 4.22806 4.28893 4.36952 4.44438 4.46319 4.57893 4.65102 4.72815 4.82660 4.86548 4.92996 4.97245 5.04824 5.07185 5.12310 5.26345 5.27470 5.38144 5.41645 5.45158 5.50638 5.55144 5.65009 5.69590 5.84799 6.28954 6.65877 7.34690 7.38838 8.16693 8.34577 9.28686 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003387 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.843297 B = 8265.483450 C =10056.314637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.044 0.956 4 C -0.117 4.117 5 C 0.147 3.853 6 H 0.039 0.961 7 C -0.148 4.148 8 N -0.699 5.699 9 C 0.516 3.484 10 O -0.585 6.585 11 C -0.074 4.074 12 C 0.176 3.824 13 N -0.476 5.476 14 S 0.140 5.860 15 C -0.148 4.148 16 C -0.096 4.096 17 C -0.071 4.071 18 C -0.119 4.119 19 C -0.053 4.053 20 C -0.146 4.146 21 N -0.731 5.731 22 C -0.224 4.224 23 H 0.069 0.931 24 C -0.077 4.077 25 N -0.968 5.968 26 Si 0.956 3.044 27 H -0.271 1.271 28 H -0.296 1.296 29 H -0.292 1.292 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.027 0.973 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.417 0.583 39 H 0.127 0.873 40 H 0.169 0.831 41 H 0.149 0.851 42 H 0.174 0.826 43 H 0.171 0.829 44 H 0.156 0.844 45 H 0.369 0.631 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.007 11.690 -25.047 29.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.062 0.938 4 C -0.155 4.155 5 C 0.042 3.958 6 H 0.057 0.943 7 C -0.207 4.207 8 N -0.351 5.351 9 C 0.301 3.699 10 O -0.464 6.464 11 C -0.118 4.118 12 C -0.014 4.014 13 N -0.287 5.287 14 S 0.296 5.704 15 C -0.268 4.268 16 C -0.119 4.119 17 C -0.093 4.093 18 C -0.139 4.139 19 C -0.075 4.075 20 C -0.157 4.157 21 N -0.372 5.372 22 C -0.356 4.356 23 H 0.087 0.913 24 C -0.269 4.269 25 N -0.620 5.620 26 Si 0.787 3.213 27 H -0.197 1.197 28 H -0.223 1.223 29 H -0.220 1.220 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.131 0.869 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.254 0.746 39 H 0.145 0.855 40 H 0.186 0.814 41 H 0.167 0.833 42 H 0.191 0.809 43 H 0.188 0.812 44 H 0.174 0.826 45 H 0.201 0.799 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.489 11.922 -22.215 27.306 hybrid contribution -0.162 -0.413 0.468 0.645 sum 10.326 11.509 -21.747 26.684 Atomic orbital electron populations 1.22309 0.97719 1.00809 1.00748 1.20562 0.92644 0.95354 0.86035 0.93780 1.22074 0.92751 1.02128 0.98529 1.20808 0.95537 0.81241 0.98235 0.94301 1.22056 1.00395 0.99970 0.98238 1.45735 1.15881 1.11521 1.61980 1.20609 0.82209 0.89872 0.77179 1.90759 1.52985 1.58139 1.44536 1.20661 0.90488 0.94068 1.06632 1.22409 0.97198 0.93276 0.88487 1.75769 1.10778 1.22741 1.19422 1.84690 0.99896 1.73549 1.12297 1.23733 0.98952 1.06245 0.97901 1.20388 0.94258 1.01093 0.96117 1.21569 1.00803 0.94359 0.92577 1.21276 0.91149 0.99163 1.02326 1.21069 1.00735 0.95498 0.90228 1.20343 0.90012 1.07681 0.97641 1.42602 1.78197 1.10055 1.06306 1.19457 1.33878 0.93711 0.88567 0.91341 1.25377 1.03667 0.96800 1.01072 1.69777 1.53156 1.10021 1.29044 0.85456 0.77914 0.77298 0.80669 1.19728 1.22251 1.21959 0.90178 0.94031 0.95414 0.86941 0.90838 0.94326 0.91707 0.89273 0.74583 0.85502 0.81396 0.83288 0.80903 0.81186 0.82628 0.79936 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 9.49 71.98 0.68 -4.35 16 2 C 0.16 5.86 2.84 44.99 0.13 5.99 16 3 H 0.04 1.61 7.56 -2.39 -0.02 1.59 16 4 C -0.12 -3.15 4.29 30.59 0.13 -3.02 16 5 C 0.15 4.51 2.52 44.99 0.11 4.62 16 6 H 0.04 1.75 7.05 -2.39 -0.02 1.73 16 7 C -0.15 -3.62 9.48 71.98 0.68 -2.94 16 8 N -0.70 -17.94 4.45 -442.51 -1.97 -19.91 16 9 C 0.52 16.34 7.79 87.66 0.68 17.03 16 10 O -0.58 -26.10 15.70 -3.03 -0.05 -26.15 16 11 C -0.07 -1.71 5.97 29.10 0.17 -1.53 16 12 C 0.18 5.38 5.37 44.74 0.24 5.63 16 13 N -0.48 -17.74 11.84 -46.34 -0.55 -18.29 16 14 S 0.14 4.53 23.86 -56.49 -1.35 3.19 16 15 C -0.15 -3.93 6.71 23.03 0.15 -3.78 16 16 C -0.10 -1.76 10.02 22.04 0.22 -1.54 16 17 C -0.07 -0.86 10.01 22.09 0.22 -0.64 16 18 C -0.12 -1.43 9.92 21.94 0.22 -1.21 16 19 C -0.05 -0.91 9.72 22.49 0.22 -0.69 16 20 C -0.15 -3.77 6.04 -20.20 -0.12 -3.90 16 21 N -0.73 -37.04 4.49 -322.94 -1.45 -38.49 16 22 C -0.22 -12.97 9.93 84.03 0.83 -12.14 16 23 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 24 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 25 N -0.97 -63.14 13.06 21.65 0.28 -62.86 16 26 Si 0.96 50.36 29.55 68.60 2.03 52.39 16 27 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 28 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 29 H -0.29 -15.52 7.11 99.48 0.71 -14.82 16 30 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.11 1.97 8.14 -2.39 -0.02 1.96 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.42 6.89 8.60 -92.71 -0.80 6.10 16 39 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.17 1.87 7.55 -2.39 -0.02 1.85 16 41 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 43 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 44 H 0.16 1.72 7.65 -2.91 -0.02 1.70 16 45 H 0.37 20.48 7.80 -92.71 -0.72 19.76 16 46 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -90.80 399.67 1.48 -89.32 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -0.51 Total: 27.56 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 5.05 Total: -6.75 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -3.68 Total: -139.56 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.05 Total: -26.15 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.03 Total: 52.39 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.35 Total: 3.19 kcal Total: -90.80 1.48 -89.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146496235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.783 kcal (2) G-P(sol) polarization free energy of solvation -90.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds