Wall clock time and date at job start Wed Apr 1 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45198 * 109.46719 * 2 1 4 4 C 1.34236 * 116.99748 * 179.97438 * 3 2 1 5 5 O 1.20816 * 119.99902 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99867 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.47158 * 180.02562 * 6 4 3 8 8 H 1.09008 * 109.47212 * 54.43203 * 7 6 4 9 9 C 1.50693 * 109.47388 * 174.43274 * 7 6 4 10 10 H 1.08000 * 120.00198 * 245.35979 * 9 7 6 11 11 C 1.37877 * 119.99935 * 65.36078 * 9 7 6 12 12 N 1.31509 * 120.00181 * 355.12387 * 11 9 7 13 13 Si 1.86804 * 120.00077 * 175.12548 * 11 9 7 14 14 H 1.48490 * 109.47351 * 94.99943 * 13 11 9 15 15 H 1.48496 * 109.46985 * 214.99897 * 13 11 9 16 16 H 1.48502 * 109.46867 * 334.99772 * 13 11 9 17 17 O 1.42901 * 109.46957 * 294.43543 * 7 6 4 18 18 C 1.35898 * 116.99987 * 155.27560 * 17 7 6 19 19 C 1.38734 * 120.05678 * 185.19482 * 18 17 7 20 20 C 1.38146 * 119.94560 * 179.74233 * 19 18 17 21 21 C 1.38269 * 120.05298 * 0.51388 * 20 19 18 22 22 C 1.50699 * 119.94077 * 179.74462 * 21 20 19 23 23 H 1.09003 * 110.21628 * 201.94886 * 22 21 20 24 24 C 1.54485 * 110.24819 * 80.01994 * 22 21 20 25 25 C 1.54624 * 101.76551 * 215.58184 * 24 22 21 26 26 C 1.51285 * 104.19645 * 24.79692 * 25 24 22 27 27 O 1.21280 * 124.94171 * 163.71138 * 26 25 24 28 28 N 1.34417 * 110.11486 * 343.74737 * 26 25 24 29 29 C 1.38270 * 120.11381 * 359.76369 * 21 20 19 30 30 C 1.38140 * 120.05284 * 359.97438 * 29 21 20 31 31 H 1.08999 * 109.46894 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47723 * 300.00360 * 1 2 3 33 33 H 1.09004 * 109.46784 * 60.00372 * 1 2 3 34 34 H 1.08999 * 109.46746 * 119.99143 * 2 1 3 35 35 H 1.08994 * 109.47224 * 239.99523 * 2 1 3 36 36 H 1.09007 * 109.47036 * 300.00444 * 6 4 3 37 37 H 1.08996 * 109.47216 * 60.00090 * 6 4 3 38 38 H 0.96998 * 120.00244 * 180.02562 * 12 11 9 39 39 H 1.07996 * 120.02404 * 359.97438 * 19 18 17 40 40 H 1.08001 * 119.97320 * 180.27805 * 20 19 18 41 41 H 1.08997 * 110.96764 * 333.70116 * 24 22 21 42 42 H 1.09000 * 110.96949 * 97.42280 * 24 22 21 43 43 H 1.08994 * 110.48846 * 143.47548 * 25 24 22 44 44 H 1.09004 * 110.48999 * 266.12021 * 25 24 22 45 45 H 0.96997 * 124.35131 * 179.59340 * 28 26 25 46 46 H 1.07993 * 119.97234 * 180.02562 * 29 21 20 47 47 H 1.08002 * 120.02690 * 180.02562 * 30 29 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8575 0.0001 8 1 5.7802 2.2412 -0.8356 9 6 6.0242 4.2433 -0.1383 10 1 6.5866 4.5088 -1.0212 11 6 5.8329 5.1723 0.8624 12 7 5.0687 4.8815 1.8924 13 14 6.6591 6.8443 0.7551 14 1 5.7190 7.8233 0.1530 15 1 7.0397 7.2967 2.1173 16 1 7.8757 6.7418 -0.0903 17 8 5.8950 2.2766 1.2270 18 6 7.1071 1.6623 1.2137 19 6 7.5549 0.9842 2.3381 20 6 8.7851 0.3560 2.3202 21 6 9.5747 0.4118 1.1865 22 6 10.9188 -0.2695 1.1718 23 1 11.5563 0.1716 0.4055 24 6 10.7480 -1.7838 0.9183 25 6 11.8731 -2.3793 1.7960 26 6 12.1060 -1.3314 2.8621 27 8 12.7009 -1.5189 3.9022 28 7 11.5570 -0.1626 2.4891 29 6 9.1332 1.0918 0.0665 30 6 7.9015 1.7170 0.0775 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5137 0.8901 35 1 1.8934 -0.5139 -0.8899 36 1 3.5850 3.4692 -0.8905 37 1 3.5843 3.4702 0.8895 38 1 4.9339 5.5352 2.5962 39 1 6.9405 0.9442 3.2254 40 1 9.1322 -0.1758 3.1938 41 1 9.7691 -2.1272 1.2529 42 1 10.9046 -2.0234 -0.1334 43 1 11.5491 -3.3170 2.2472 44 1 12.7772 -2.5310 1.2063 45 1 11.5796 0.6476 3.0220 46 1 9.7516 1.1336 -0.8179 47 1 7.5569 2.2477 -0.7977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234482211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:20 Heat of formation + Delta-G solvation = -159.827812 kcal Electronic energy + Delta-G solvation = -30484.126375 eV Core-core repulsion = 26210.223096 eV Total energy + Delta-G solvation = -4273.903280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.59659 -41.40392 -40.42712 -38.66938 -37.56081 -36.96188 -35.02096 -32.95189 -32.31012 -32.16880 -31.61601 -31.13433 -28.18277 -27.20836 -24.90154 -24.01438 -23.31799 -22.98139 -21.82879 -21.48416 -21.17429 -19.42346 -18.79517 -18.35762 -17.83879 -17.53154 -17.48008 -17.15909 -16.62858 -16.37605 -16.13490 -15.47225 -15.38611 -15.35919 -14.98853 -14.68057 -14.40056 -14.27224 -14.12818 -13.99294 -13.76699 -13.61533 -13.53231 -13.31758 -13.13223 -12.95332 -12.85330 -12.72632 -12.57732 -12.46424 -12.35317 -12.04457 -11.90857 -11.85048 -11.49374 -11.43531 -11.12895 -10.97833 -10.90449 -10.65645 -10.14456 -9.77965 -8.67586 -8.17001 -6.42466 0.57347 0.67683 1.31517 1.40365 1.44810 1.52762 1.59285 1.83924 2.38019 2.45641 2.82929 2.98554 3.24363 3.53640 3.62572 3.90147 3.95384 4.00658 4.07970 4.12902 4.15795 4.25752 4.32990 4.34752 4.49634 4.53971 4.59868 4.63814 4.71102 4.84560 4.89824 4.90862 4.92641 5.04841 5.12420 5.13773 5.20403 5.27234 5.34067 5.49023 5.52392 5.64418 5.67474 5.80577 5.90705 5.96305 6.07225 6.13650 6.56772 6.87609 7.11080 7.24889 7.39986 8.83468 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008857 B = 0.003237 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.430643 B = 8646.917306 C =11065.159299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.463 3.537 5 O -0.537 6.537 6 C -0.098 4.098 7 C 0.228 3.772 8 H 0.028 0.972 9 C -0.573 4.573 10 H 0.068 0.932 11 C 0.049 3.951 12 N -0.882 5.882 13 Si 0.949 3.051 14 H -0.268 1.268 15 H -0.290 1.290 16 H -0.268 1.268 17 O -0.313 6.313 18 C 0.151 3.849 19 C -0.198 4.198 20 C -0.063 4.063 21 C -0.158 4.158 22 C 0.186 3.814 23 H 0.114 0.886 24 C -0.118 4.118 25 C -0.146 4.146 26 C 0.509 3.491 27 O -0.594 6.594 28 N -0.719 5.719 29 C -0.060 4.060 30 C -0.218 4.218 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.265 0.735 39 H 0.106 0.894 40 H 0.127 0.873 41 H 0.075 0.925 42 H 0.123 0.877 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.408 0.592 46 H 0.154 0.846 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 -10.813 -6.699 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.285 6.285 4 C 0.309 3.691 5 O -0.427 6.427 6 C -0.135 4.135 7 C 0.173 3.827 8 H 0.046 0.954 9 C -0.609 4.609 10 H 0.086 0.914 11 C -0.156 4.156 12 N -0.517 5.517 13 Si 0.774 3.226 14 H -0.193 1.193 15 H -0.216 1.216 16 H -0.193 1.193 17 O -0.226 6.226 18 C 0.103 3.897 19 C -0.217 4.217 20 C -0.081 4.081 21 C -0.159 4.159 22 C 0.082 3.918 23 H 0.132 0.868 24 C -0.156 4.156 25 C -0.186 4.186 26 C 0.298 3.702 27 O -0.476 6.476 28 N -0.372 5.372 29 C -0.078 4.078 30 C -0.236 4.236 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.145 0.855 41 H 0.094 0.906 42 H 0.141 0.859 43 H 0.127 0.873 44 H 0.147 0.853 45 H 0.247 0.753 46 H 0.171 0.829 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.762 -11.231 -5.931 12.998 hybrid contribution -0.032 1.576 0.612 1.691 sum 2.730 -9.654 -5.319 11.356 Atomic orbital electron populations 1.21809 0.89983 1.04431 1.03672 1.23272 0.97418 0.79712 1.02072 1.86552 1.24363 1.33534 1.84041 1.24568 0.80328 0.93524 0.70714 1.90573 1.61010 1.44141 1.47009 1.21709 0.96150 0.88955 1.06706 1.19703 0.89318 0.92049 0.81618 0.95411 1.21600 1.36880 0.96574 1.05883 0.91422 1.25624 0.94161 1.01393 0.94464 1.70003 1.35917 1.35917 1.09882 0.85691 0.79383 0.80206 0.77289 1.19274 1.21566 1.19286 1.86159 1.30963 1.66670 1.38784 1.19486 0.86249 0.89616 0.94361 1.20468 0.99141 1.04506 0.97537 1.20645 0.91954 0.97173 0.98323 1.19761 0.97554 1.04078 0.94556 1.20592 0.89515 0.97058 0.84643 0.86806 1.22774 0.98743 0.91179 1.02859 1.22399 1.02095 0.97914 0.96143 1.21588 0.76379 0.85471 0.86789 1.90717 1.45092 1.83281 1.28477 1.46529 1.56064 1.13079 1.21540 1.20983 0.94331 0.94004 0.98523 1.21396 0.97409 1.06124 0.98721 0.87816 0.91643 0.90970 0.92356 0.91297 0.86257 0.86714 0.92518 0.87603 0.85491 0.90575 0.85892 0.87335 0.85302 0.75333 0.82863 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 10.29 71.98 0.74 -1.95 16 2 C 0.05 1.35 6.19 71.98 0.45 1.80 16 3 O -0.37 -13.18 10.22 -51.47 -0.53 -13.71 16 4 C 0.46 19.47 7.84 71.24 0.56 20.03 16 5 O -0.54 -24.80 15.18 26.93 0.41 -24.40 16 6 C -0.10 -4.33 5.28 29.85 0.16 -4.17 16 7 C 0.23 10.97 1.34 29.85 0.04 11.01 16 8 H 0.03 1.33 6.12 -2.38 -0.01 1.32 16 9 C -0.57 -28.68 7.95 25.60 0.20 -28.47 16 10 H 0.07 3.30 7.82 -2.91 -0.02 3.27 16 11 C 0.05 2.47 5.26 84.66 0.44 2.91 16 12 N -0.88 -47.06 11.04 21.45 0.24 -46.82 16 13 Si 0.95 40.51 29.54 68.60 2.03 42.54 16 14 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 15 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 17 O -0.31 -16.10 8.28 -79.17 -0.66 -16.76 16 18 C 0.15 6.85 6.59 22.51 0.15 6.99 16 19 C -0.20 -8.01 9.99 22.37 0.22 -7.79 16 20 C -0.06 -1.98 9.32 22.26 0.21 -1.78 16 21 C -0.16 -4.19 4.92 -19.85 -0.10 -4.29 16 22 C 0.19 3.37 3.72 44.70 0.17 3.54 16 23 H 0.11 1.55 8.06 -2.39 -0.02 1.53 16 24 C -0.12 -1.63 6.67 31.65 0.21 -1.42 16 25 C -0.15 -2.11 6.86 30.59 0.21 -1.91 16 26 C 0.51 12.16 8.43 87.90 0.74 12.90 16 27 O -0.59 -19.87 18.03 -3.03 -0.05 -19.92 16 28 N -0.72 -15.36 5.01 -442.96 -2.22 -17.58 16 29 C -0.06 -1.76 9.68 22.25 0.22 -1.54 16 30 C -0.22 -8.57 8.70 22.37 0.19 -8.38 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 35 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 36 H 0.12 4.72 8.14 -2.38 -0.02 4.70 16 37 H 0.11 5.63 6.47 -2.39 -0.02 5.61 16 38 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 39 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 40 H 0.13 3.61 7.62 -2.91 -0.02 3.59 16 41 H 0.08 1.27 7.89 -2.39 -0.02 1.25 16 42 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.13 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.41 9.04 8.96 -92.71 -0.83 8.21 16 46 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 47 H 0.12 4.99 5.69 -2.91 -0.02 4.98 16 Total: -1.00 -70.08 393.95 4.19 -65.88 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.17 Total: 33.27 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 4.81 Total: -2.50 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -1.98 Total: -64.40 kcal Atomic # 8 Polarization: -73.96 SS G_CDS: -0.83 Total: -74.78 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -70.08 4.19 -65.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234482211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.946 kcal (2) G-P(sol) polarization free energy of solvation -70.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds