Wall clock time and date at job start Wed Apr 1 2020 04:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46955 * 2 1 4 4 C 1.53004 * 109.46854 * 240.00177 * 2 1 3 5 5 N 1.46908 * 109.46995 * 184.99678 * 4 2 1 6 6 C 1.46898 * 111.00082 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.47198 * 180.02562 * 6 5 4 8 8 C 1.37974 * 120.07655 * 260.00228 * 7 6 5 9 9 C 1.38342 * 120.14875 * 180.25332 * 8 7 6 10 10 C 1.38385 * 120.30524 * 359.44605 * 9 8 7 11 11 C 1.37922 * 120.15281 * 0.55119 * 10 9 8 12 12 C 1.39608 * 120.07972 * 79.97705 * 7 6 5 13 13 C 1.43205 * 120.14639 * 0.02562 * 12 7 6 14 14 N 5.28763 * 126.34567 * 182.57210 * 2 1 3 15 15 N 1.46501 * 109.47451 * 120.00049 * 2 1 3 16 16 C 1.46500 * 119.99516 * 60.00277 * 15 2 1 17 17 C 1.34769 * 119.99954 * 239.99831 * 15 2 1 18 18 O 1.21285 * 120.00280 * 0.02562 * 17 15 2 19 19 C 1.50700 * 120.00011 * 179.97438 * 17 15 2 20 20 S 1.80999 * 109.47458 * 180.02562 * 19 17 15 21 21 C 1.76199 * 100.00113 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99844 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99826 * 180.02562 * 21 20 19 24 24 N 1.31635 * 120.00494 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00134 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47070 * 89.99653 * 25 23 21 27 27 H 1.48496 * 109.47597 * 210.00044 * 25 23 21 28 28 H 1.48509 * 109.46858 * 330.00105 * 25 23 21 29 29 H 1.09002 * 109.46995 * 299.99767 * 1 2 3 30 30 H 1.08997 * 109.47187 * 60.00186 * 1 2 3 31 31 H 1.09000 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47286 * 65.00085 * 4 2 1 33 33 H 1.08990 * 109.47404 * 304.99726 * 4 2 1 34 34 H 1.00897 * 110.99836 * 56.04565 * 5 4 2 35 35 H 1.09002 * 109.47258 * 59.99831 * 6 5 4 36 36 H 1.08997 * 109.47009 * 300.00174 * 6 5 4 37 37 H 1.08002 * 119.92160 * 359.97132 * 8 7 6 38 38 H 1.08005 * 119.84349 * 179.71729 * 9 8 7 39 39 H 1.08004 * 119.92387 * 180.30078 * 10 9 8 40 40 H 1.07997 * 120.07946 * 179.75021 * 11 10 9 41 41 H 1.08994 * 109.47278 * 90.00307 * 16 15 2 42 42 H 1.09001 * 109.46708 * 209.99764 * 16 15 2 43 43 H 1.08999 * 109.47490 * 329.99472 * 16 15 2 44 44 H 1.09001 * 109.47416 * 300.00471 * 19 17 15 45 45 H 1.09003 * 109.47134 * 60.00298 * 19 17 15 46 46 H 0.96992 * 120.00646 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1905 6 6 4.0304 -1.5147 -2.3769 7 6 5.5316 -1.6043 -2.2809 8 6 6.3232 -0.7122 -2.9746 9 6 7.7016 -0.7963 -2.8917 10 6 8.2959 -1.7671 -2.1047 11 6 7.5166 -2.6653 -1.4059 12 6 6.1246 -2.5897 -1.4896 13 6 5.3092 -3.5190 -0.7669 14 7 4.6637 -4.2547 -0.1911 15 7 2.0184 -0.6906 1.1961 16 6 1.6645 -2.0932 1.4278 17 6 2.7933 -0.0356 2.0832 18 8 3.0859 1.1257 1.8915 19 6 3.2952 -0.7459 3.3139 20 16 4.3003 0.3919 4.2995 21 6 4.7432 -0.6691 5.6347 22 1 4.3926 -1.6904 5.6519 23 6 5.5417 -0.1919 6.6648 24 7 5.9686 1.0532 6.6440 25 14 6.0106 -1.3164 8.0807 26 1 7.2785 -2.0182 7.7564 27 1 6.1928 -0.5098 9.3141 28 1 4.9333 -2.3154 8.2972 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7516 -0.1583 -2.1371 33 1 1.6054 -1.7197 -1.2953 34 1 3.7996 -1.2883 -0.3435 35 1 3.7558 -0.9569 -3.2722 36 1 3.6096 -2.5187 -2.4311 37 1 5.8658 0.0506 -3.5872 38 1 8.3166 -0.0983 -3.4404 39 1 9.3725 -1.8241 -2.0406 40 1 7.9817 -3.4249 -0.7953 41 1 2.4158 -2.7377 0.9715 42 1 1.6240 -2.2853 2.5000 43 1 0.6905 -2.3003 0.9846 44 1 2.4473 -1.0881 3.9072 45 1 3.9006 -1.6025 3.0176 46 1 6.5269 1.3865 7.3637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268050364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:21 Heat of formation + Delta-G solvation = 24.267923 kcal Electronic energy + Delta-G solvation = -27784.001803 eV Core-core repulsion = 23993.127136 eV Total energy + Delta-G solvation = -3790.874667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.07779 -39.61388 -36.96464 -36.56722 -35.09708 -32.60427 -32.39421 -31.55970 -31.10598 -28.64835 -26.97529 -26.67576 -25.45107 -24.39271 -23.62201 -21.86321 -21.42776 -19.01497 -18.83844 -17.68667 -16.94407 -16.65050 -16.08680 -15.70780 -15.67869 -15.15885 -14.92646 -14.77484 -14.69237 -14.08215 -14.02608 -13.88844 -13.39331 -13.28519 -13.20995 -13.02664 -12.97894 -12.74529 -12.58577 -12.39659 -12.36718 -12.22443 -12.15046 -11.85437 -11.68159 -11.54605 -11.22855 -11.03871 -10.99627 -10.91848 -10.72358 -9.76852 -9.25770 -9.22666 -9.16930 -9.03294 -8.66092 -8.43390 -8.18026 -6.45346 -6.18269 -3.88060 0.51670 1.02825 2.47718 2.76028 2.97184 3.13645 3.24249 3.28146 3.32351 3.52706 3.64845 3.67091 4.07795 4.23692 4.40315 4.46810 4.69937 4.74238 4.93206 4.98366 5.06809 5.08949 5.12227 5.16042 5.16708 5.23383 5.29016 5.37358 5.41951 5.45915 5.48765 5.55487 5.63964 5.64996 5.75088 5.93481 5.98083 6.01290 6.09395 6.12852 6.16247 6.18444 6.52223 6.69213 6.80248 7.12513 7.28711 7.59477 7.63256 8.38730 8.64407 9.27095 10.89127 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.008347 B = 0.003499 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3353.535039 B = 8001.233527 C = 9891.561459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.112 0.888 4 C 0.052 3.948 5 N -0.676 5.676 6 C 0.091 3.909 7 C -0.034 4.034 8 C -0.101 4.101 9 C -0.089 4.089 10 C -0.119 4.119 11 C -0.068 4.068 12 C -0.027 4.027 13 C 0.248 3.752 14 N -0.410 5.410 15 N -0.620 5.620 16 C 0.078 3.922 17 C 0.535 3.465 18 O -0.508 6.508 19 C -0.150 4.150 20 S -0.058 6.058 21 C -0.535 4.535 22 H 0.071 0.929 23 C 0.075 3.925 24 N -0.867 5.867 25 Si 0.916 3.084 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.030 0.970 34 H 0.347 0.653 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 -6.927 -23.630 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.130 0.870 4 C -0.078 4.078 5 N -0.309 5.309 6 C -0.038 4.038 7 C -0.037 4.037 8 C -0.119 4.119 9 C -0.108 4.108 10 C -0.138 4.138 11 C -0.088 4.088 12 C -0.031 4.031 13 C -0.067 4.067 14 N -0.085 5.085 15 N -0.357 5.357 16 C -0.066 4.066 17 C 0.323 3.677 18 O -0.382 6.382 19 C -0.301 4.301 20 S 0.169 5.831 21 C -0.683 4.683 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.743 3.257 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.048 0.952 34 H 0.166 0.834 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.484 -5.577 -23.173 24.088 hybrid contribution -0.004 -2.902 1.217 3.147 sum -3.487 -8.479 -21.956 23.793 Atomic orbital electron populations 1.22105 0.94854 1.02082 1.02768 1.21069 0.93425 0.99022 0.83188 0.87048 1.22348 0.87562 0.99108 0.98785 1.60435 1.09843 1.56246 1.04349 1.20975 0.89905 0.97394 0.95501 1.19794 0.95507 0.93393 0.94989 1.20981 0.93408 0.97965 0.99553 1.21427 0.94851 0.97301 0.97183 1.21127 1.00411 0.95204 0.97029 1.21189 0.91215 0.98780 0.97664 1.15951 0.91767 0.95470 0.99899 1.25736 0.93733 0.93509 0.93728 1.81239 1.08743 1.09915 1.08567 1.47912 1.52466 1.12241 1.23119 1.21724 1.00280 0.81853 1.02737 1.20280 0.77113 0.86820 0.83457 1.90689 1.55767 1.16394 1.75312 1.23558 1.04143 1.04639 0.97725 1.85360 1.61113 1.15099 1.21540 1.22866 1.37272 0.99726 1.08416 0.91082 1.24964 0.95124 0.95488 0.97875 1.70017 1.33196 1.14301 1.32776 0.86203 0.78908 0.79993 0.80617 1.20286 1.20728 1.19725 0.91676 0.91433 0.92538 0.89786 0.95172 0.83367 0.89171 0.94466 0.84784 0.85091 0.84851 0.84891 0.93426 0.90550 0.91321 0.89443 0.89660 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.17 37.16 0.34 -1.20 16 2 C 0.14 1.70 2.95 -67.93 -0.20 1.50 16 3 H 0.11 1.68 6.90 -51.93 -0.36 1.32 16 4 C 0.05 0.54 5.03 -3.82 -0.02 0.52 16 5 N -0.68 -8.19 6.48 -115.06 -0.75 -8.93 16 6 C 0.09 0.86 5.28 -4.98 -0.03 0.84 16 7 C -0.03 -0.33 5.43 -104.21 -0.57 -0.90 16 8 C -0.10 -0.82 9.66 -39.64 -0.38 -1.20 16 9 C -0.09 -0.64 10.04 -39.49 -0.40 -1.04 16 10 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 11 C -0.07 -0.62 9.76 -39.17 -0.38 -1.00 16 12 C -0.03 -0.29 5.73 -106.93 -0.61 -0.90 16 13 C 0.25 3.14 13.31 -22.49 -0.30 2.84 16 14 N -0.41 -5.90 18.53 41.82 0.78 -5.13 16 15 N -0.62 -9.10 1.83 -173.93 -0.32 -9.42 16 16 C 0.08 0.95 9.38 59.85 0.56 1.51 16 17 C 0.54 10.53 7.69 -10.99 -0.08 10.44 16 18 O -0.51 -11.82 15.19 5.55 0.08 -11.73 16 19 C -0.15 -3.21 4.71 36.01 0.17 -3.04 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.53 -15.58 9.50 30.94 0.29 -15.29 16 22 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 23 C 0.07 2.17 5.49 -17.43 -0.10 2.07 16 24 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 25 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.48 6.66 -51.93 -0.35 0.14 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.03 0.29 7.84 -51.93 -0.41 -0.11 16 34 H 0.35 4.99 7.13 -39.29 -0.28 4.71 16 35 H 0.09 0.67 8.00 -51.93 -0.42 0.26 16 36 H 0.04 0.36 7.48 -51.93 -0.39 -0.03 16 37 H 0.13 0.85 8.04 -52.49 -0.42 0.43 16 38 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 39 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 42 H 0.08 0.95 6.44 -51.93 -0.33 0.62 16 43 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 44 H 0.09 1.75 7.40 -51.91 -0.38 1.37 16 45 H 0.09 1.76 8.11 -51.92 -0.42 1.34 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 403.14 15.07 6.08 6.08 Total: -1.00 -35.74 403.14 -9.32 -45.06 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.59 Total: 3.01 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.10 Total: -6.17 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.44 Total: -49.22 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.74 -9.32 -45.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268050364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.330 kcal (2) G-P(sol) polarization free energy of solvation -35.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds