Wall clock time and date at job start Wed Apr 1 2020 04:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46955 * 2 1 4 4 C 1.53004 * 109.46854 * 240.00177 * 2 1 3 5 5 N 1.46908 * 109.46995 * 184.99678 * 4 2 1 6 6 C 1.46898 * 111.00082 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.47198 * 180.02562 * 6 5 4 8 8 C 1.37974 * 120.07655 * 260.00228 * 7 6 5 9 9 C 1.38342 * 120.14875 * 180.25332 * 8 7 6 10 10 C 1.38385 * 120.30524 * 359.44605 * 9 8 7 11 11 C 1.37922 * 120.15281 * 0.55119 * 10 9 8 12 12 C 1.39608 * 120.07972 * 79.97705 * 7 6 5 13 13 C 1.43205 * 120.14639 * 0.02562 * 12 7 6 14 14 N 5.28763 * 126.34567 * 182.57210 * 2 1 3 15 15 N 1.46501 * 109.47451 * 120.00049 * 2 1 3 16 16 C 1.46500 * 119.99516 * 60.00277 * 15 2 1 17 17 C 1.34769 * 119.99954 * 239.99831 * 15 2 1 18 18 O 1.21285 * 120.00280 * 0.02562 * 17 15 2 19 19 C 1.50700 * 120.00011 * 179.97438 * 17 15 2 20 20 S 1.80999 * 109.47458 * 180.02562 * 19 17 15 21 21 C 1.76199 * 100.00113 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99844 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99826 * 180.02562 * 21 20 19 24 24 N 1.31635 * 120.00494 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00134 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47070 * 89.99653 * 25 23 21 27 27 H 1.48496 * 109.47597 * 210.00044 * 25 23 21 28 28 H 1.48509 * 109.46858 * 330.00105 * 25 23 21 29 29 H 1.09002 * 109.46995 * 299.99767 * 1 2 3 30 30 H 1.08997 * 109.47187 * 60.00186 * 1 2 3 31 31 H 1.09000 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47286 * 65.00085 * 4 2 1 33 33 H 1.08990 * 109.47404 * 304.99726 * 4 2 1 34 34 H 1.00897 * 110.99836 * 56.04565 * 5 4 2 35 35 H 1.09002 * 109.47258 * 59.99831 * 6 5 4 36 36 H 1.08997 * 109.47009 * 300.00174 * 6 5 4 37 37 H 1.08002 * 119.92160 * 359.97132 * 8 7 6 38 38 H 1.08005 * 119.84349 * 179.71729 * 9 8 7 39 39 H 1.08004 * 119.92387 * 180.30078 * 10 9 8 40 40 H 1.07997 * 120.07946 * 179.75021 * 11 10 9 41 41 H 1.08994 * 109.47278 * 90.00307 * 16 15 2 42 42 H 1.09001 * 109.46708 * 209.99764 * 16 15 2 43 43 H 1.08999 * 109.47490 * 329.99472 * 16 15 2 44 44 H 1.09001 * 109.47416 * 300.00471 * 19 17 15 45 45 H 1.09003 * 109.47134 * 60.00298 * 19 17 15 46 46 H 0.96992 * 120.00646 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1905 6 6 4.0304 -1.5147 -2.3769 7 6 5.5316 -1.6043 -2.2809 8 6 6.3232 -0.7122 -2.9746 9 6 7.7016 -0.7963 -2.8917 10 6 8.2959 -1.7671 -2.1047 11 6 7.5166 -2.6653 -1.4059 12 6 6.1246 -2.5897 -1.4896 13 6 5.3092 -3.5190 -0.7669 14 7 4.6637 -4.2547 -0.1911 15 7 2.0184 -0.6906 1.1961 16 6 1.6645 -2.0932 1.4278 17 6 2.7933 -0.0356 2.0832 18 8 3.0859 1.1257 1.8915 19 6 3.2952 -0.7459 3.3139 20 16 4.3003 0.3919 4.2995 21 6 4.7432 -0.6691 5.6347 22 1 4.3926 -1.6904 5.6519 23 6 5.5417 -0.1919 6.6648 24 7 5.9686 1.0532 6.6440 25 14 6.0106 -1.3164 8.0807 26 1 7.2785 -2.0182 7.7564 27 1 6.1928 -0.5098 9.3141 28 1 4.9333 -2.3154 8.2972 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7516 -0.1583 -2.1371 33 1 1.6054 -1.7197 -1.2953 34 1 3.7996 -1.2883 -0.3435 35 1 3.7558 -0.9569 -3.2722 36 1 3.6096 -2.5187 -2.4311 37 1 5.8658 0.0506 -3.5872 38 1 8.3166 -0.0983 -3.4404 39 1 9.3725 -1.8241 -2.0406 40 1 7.9817 -3.4249 -0.7953 41 1 2.4158 -2.7377 0.9715 42 1 1.6240 -2.2853 2.5000 43 1 0.6905 -2.3003 0.9846 44 1 2.4473 -1.0881 3.9072 45 1 3.9006 -1.6025 3.0176 46 1 6.5269 1.3865 7.3637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268050364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:20 Heat of formation + Delta-G solvation = 1.769374 kcal Electronic energy + Delta-G solvation = -27784.977413 eV Core-core repulsion = 23993.127136 eV Total energy + Delta-G solvation = -3791.850278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.15271 -40.59036 -38.10574 -37.53827 -36.13845 -34.61022 -33.64678 -32.25141 -31.94424 -30.20802 -27.95946 -27.69362 -27.55186 -25.17027 -24.34777 -22.75878 -22.42680 -20.31395 -19.65720 -19.58316 -18.33151 -17.60027 -17.04233 -16.90221 -16.79340 -16.68249 -16.13577 -16.03721 -15.84903 -15.39004 -15.00007 -14.79738 -14.62425 -14.46702 -14.39894 -14.16851 -14.05363 -13.94342 -13.60687 -13.43715 -13.30599 -13.21445 -13.11582 -13.09273 -12.95203 -12.92009 -12.63753 -12.52814 -12.27431 -11.94691 -11.83472 -11.71361 -11.16780 -10.85328 -10.30858 -9.89371 -9.87074 -9.77418 -9.39921 -8.68887 -8.36802 -6.14958 -0.20800 0.38594 1.22617 1.39198 1.42252 1.51941 1.53625 1.57772 1.92428 2.07383 2.24709 2.77399 2.83488 2.96782 3.21298 3.30013 3.66632 3.68509 3.81520 3.93951 4.07219 4.13710 4.17618 4.18945 4.25012 4.33758 4.38524 4.46368 4.50450 4.54204 4.59632 4.64979 4.67129 4.73091 4.81740 4.83972 5.03360 5.09120 5.25094 5.35296 5.38384 5.45731 5.53699 5.59762 5.90798 5.98691 6.11560 6.16995 6.24801 6.35009 7.04088 7.14998 8.72501 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.008347 B = 0.003499 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3353.535039 B = 8001.233527 C = 9891.561459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.132 3.868 3 H 0.081 0.919 4 C 0.058 3.942 5 N -0.694 5.694 6 C 0.094 3.906 7 C -0.045 4.045 8 C -0.106 4.106 9 C -0.084 4.084 10 C -0.121 4.121 11 C -0.079 4.079 12 C -0.054 4.054 13 C 0.263 3.737 14 N -0.453 5.453 15 N -0.604 5.604 16 C 0.074 3.926 17 C 0.536 3.464 18 O -0.553 6.553 19 C -0.125 4.125 20 S -0.138 6.138 21 C -0.550 4.550 22 H 0.076 0.924 23 C 0.018 3.982 24 N -0.908 5.908 25 Si 0.995 3.005 26 H -0.267 1.267 27 H -0.273 1.273 28 H -0.261 1.261 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.043 0.957 34 H 0.329 0.671 35 H 0.113 0.887 36 H 0.034 0.966 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.139 0.861 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 -8.120 -25.179 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.029 3.971 3 H 0.099 0.901 4 C -0.072 4.072 5 N -0.325 5.325 6 C -0.034 4.034 7 C -0.048 4.048 8 C -0.124 4.124 9 C -0.103 4.103 10 C -0.139 4.139 11 C -0.099 4.099 12 C -0.058 4.058 13 C -0.051 4.051 14 N -0.128 5.128 15 N -0.338 5.338 16 C -0.068 4.068 17 C 0.323 3.677 18 O -0.431 6.431 19 C -0.276 4.276 20 S 0.089 5.911 21 C -0.698 4.698 22 H 0.094 0.906 23 C -0.187 4.187 24 N -0.544 5.544 25 Si 0.817 3.183 26 H -0.193 1.193 27 H -0.198 1.198 28 H -0.185 1.185 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.146 0.854 35 H 0.132 0.868 36 H 0.052 0.948 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.176 0.824 40 H 0.156 0.844 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.109 0.891 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.896 -6.803 -24.771 25.982 hybrid contribution 0.112 -2.510 1.533 2.943 sum -3.784 -9.313 -23.238 25.319 Atomic orbital electron populations 1.22053 0.92210 1.03404 1.03267 1.21296 0.95372 0.97471 0.82916 0.90117 1.22372 0.86742 0.99781 0.98297 1.60504 1.10936 1.56659 1.04404 1.21039 0.89770 0.97377 0.95214 1.19955 0.95933 0.93631 0.95300 1.21296 0.93931 0.97851 0.99362 1.21838 0.94872 0.97134 0.96409 1.21478 1.01619 0.94554 0.96273 1.21411 0.90834 0.99536 0.98139 1.16174 0.92340 0.96162 1.01145 1.26140 0.93065 0.92958 0.92928 1.81216 1.10044 1.11431 1.10157 1.47853 1.50409 1.13021 1.22561 1.21910 1.01972 0.79960 1.02976 1.19962 0.77770 0.86261 0.83693 1.90669 1.57904 1.18168 1.76351 1.23366 1.03398 1.02951 0.97901 1.85467 1.63300 1.18871 1.23431 1.23166 1.37842 0.99894 1.08888 0.90582 1.26066 0.94644 0.97153 1.00831 1.70168 1.33877 1.16431 1.33969 0.85007 0.78941 0.77804 0.76563 1.19254 1.19828 1.18517 0.93257 0.88932 0.90691 0.87321 0.93879 0.85364 0.86842 0.94789 0.82833 0.82205 0.82412 0.84358 0.93651 0.90810 0.87882 0.87967 0.89075 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.17 71.98 0.66 -1.89 16 2 C 0.13 3.14 2.95 44.99 0.13 3.27 16 3 H 0.08 2.47 6.90 -2.39 -0.02 2.45 16 4 C 0.06 1.07 5.03 86.30 0.43 1.51 16 5 N -0.69 -16.23 6.48 -517.93 -3.36 -19.59 16 6 C 0.09 1.66 5.28 85.56 0.45 2.11 16 7 C -0.05 -0.85 5.43 -19.60 -0.11 -0.95 16 8 C -0.11 -1.52 9.66 22.23 0.21 -1.31 16 9 C -0.08 -1.01 10.04 22.33 0.22 -0.79 16 10 C -0.12 -1.62 10.03 22.23 0.22 -1.40 16 11 C -0.08 -1.40 9.76 22.54 0.22 -1.18 16 12 C -0.05 -1.16 5.73 -21.36 -0.12 -1.29 16 13 C 0.26 6.83 13.31 88.34 1.18 8.00 16 14 N -0.45 -13.39 18.53 19.00 0.35 -13.04 16 15 N -0.60 -17.44 1.83 -822.60 -1.51 -18.95 16 16 C 0.07 1.70 9.38 127.77 1.20 2.90 16 17 C 0.54 21.58 7.69 87.66 0.67 22.26 16 18 O -0.55 -26.87 15.19 -3.04 -0.05 -26.92 16 19 C -0.12 -5.47 4.71 71.24 0.34 -5.14 16 20 S -0.14 -7.97 20.57 -56.49 -1.16 -9.14 16 21 C -0.55 -32.66 9.50 67.95 0.65 -32.01 16 22 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 23 C 0.02 1.06 5.49 84.86 0.47 1.53 16 24 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 25 Si 1.00 44.78 29.55 68.60 2.03 46.80 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 28 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.00 6.66 -2.39 -0.02 0.99 16 32 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.04 0.71 7.84 -2.39 -0.02 0.69 16 34 H 0.33 9.51 7.13 -89.70 -0.64 8.87 16 35 H 0.11 1.42 8.00 -2.39 -0.02 1.40 16 36 H 0.03 0.62 7.48 -2.39 -0.02 0.60 16 37 H 0.15 1.53 8.04 -2.91 -0.02 1.51 16 38 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.04 1.10 8.13 -2.39 -0.02 1.08 16 42 H 0.07 1.75 6.44 -2.39 -0.02 1.73 16 43 H 0.10 1.68 6.43 -2.39 -0.02 1.66 16 44 H 0.10 4.13 7.40 -2.40 -0.02 4.11 16 45 H 0.09 3.85 8.11 -2.39 -0.02 3.83 16 46 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -81.70 403.14 3.78 -77.92 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.36 Total: 23.62 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 6.83 Total: -4.39 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -4.23 Total: -107.90 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.14 kcal Total: -81.70 3.78 -77.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268050364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.685 kcal (2) G-P(sol) polarization free energy of solvation -81.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds