Wall clock time and date at job start Wed Apr 1 2020 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35998 * 116.99897 * 2 1 4 4 C 1.38176 * 119.96154 * 359.97438 * 3 2 1 5 5 C 1.39970 * 119.91929 * 179.97438 * 4 3 2 6 6 C 1.46939 * 120.08621 * 180.02562 * 5 4 3 7 7 C 1.35154 * 120.00344 * 180.02562 * 6 5 4 8 8 C 1.41794 * 119.99808 * 180.02562 * 7 6 5 9 9 O 1.21779 * 120.00365 * 354.30033 * 8 7 6 10 10 N 1.34782 * 119.99422 * 174.29886 * 8 7 6 11 11 C 1.36749 * 119.99579 * 184.63067 * 10 8 7 12 12 H 1.07996 * 120.00263 * 18.04995 * 11 10 8 13 13 C 1.39091 * 119.99612 * 198.04923 * 11 10 8 14 14 N 1.31344 * 120.00418 * 9.55692 * 13 11 10 15 15 Si 1.86805 * 119.99612 * 189.55494 * 13 11 10 16 16 H 1.48500 * 109.46834 * 90.00298 * 15 13 11 17 17 H 1.48503 * 109.46802 * 210.00038 * 15 13 11 18 18 H 1.48497 * 109.47287 * 329.99993 * 15 13 11 19 19 C 1.46499 * 120.00260 * 4.63909 * 10 8 7 20 20 C 1.53003 * 117.49324 * 308.54219 * 19 10 8 21 21 C 1.52999 * 117.49518 * 239.92305 * 19 10 8 22 22 C 1.39985 * 119.83665 * 0.02562 * 5 4 3 23 23 C 1.38172 * 119.91130 * 359.97438 * 22 5 4 24 24 O 1.35996 * 119.95697 * 179.97438 * 23 22 5 25 25 C 1.42895 * 117.00361 * 359.97438 * 24 23 22 26 26 C 1.39281 * 120.08504 * 359.74704 * 23 22 5 27 27 O 1.35922 * 119.92039 * 180.27192 * 26 23 22 28 28 C 1.42894 * 117.00178 * 270.23586 * 27 26 23 29 29 H 1.08998 * 109.47503 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47070 * 300.00337 * 1 2 3 31 31 H 1.09005 * 109.47186 * 60.00390 * 1 2 3 32 32 H 1.08006 * 120.04060 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.00104 * 0.02562 * 6 5 4 34 34 H 1.08002 * 119.99551 * 0.02562 * 7 6 5 35 35 H 0.96999 * 120.00145 * 179.97438 * 14 13 11 36 36 H 1.08992 * 115.55397 * 94.25007 * 19 10 8 37 37 H 1.09000 * 117.50376 * 0.02562 * 20 19 10 38 38 H 1.09007 * 117.49677 * 145.02221 * 20 19 10 39 39 H 1.09001 * 117.49844 * 214.97628 * 21 19 10 40 40 H 1.09008 * 117.50123 * 359.97438 * 21 19 10 41 41 H 1.07992 * 120.04680 * 179.97438 * 22 5 4 42 42 H 1.08996 * 109.47837 * 180.02562 * 25 24 23 43 43 H 1.09005 * 109.47177 * 300.00769 * 25 24 23 44 44 H 1.09006 * 109.46593 * 59.99952 * 25 24 23 45 45 H 1.09004 * 109.47097 * 179.97438 * 28 27 26 46 46 H 1.09001 * 109.47012 * 299.99569 * 28 27 26 47 47 H 1.08997 * 109.47334 * 60.00041 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2930 2.3701 -0.0005 5 6 1.9294 3.6168 0.0000 6 6 1.1318 4.8509 0.0000 7 6 1.7480 6.0538 0.0000 8 6 0.9783 7.2446 0.0006 9 8 -0.2336 7.1864 -0.1037 10 7 1.5881 8.4410 0.1165 11 6 0.8413 9.5825 0.2124 12 1 -0.2017 9.5241 0.4865 13 6 1.4250 10.8189 -0.0431 14 7 2.6326 10.8817 -0.5557 15 14 0.4913 12.3901 0.3428 16 1 0.7906 12.8147 1.7340 17 1 0.9080 13.4581 -0.6012 18 1 -0.9669 12.1467 0.2024 19 6 3.0508 8.5185 0.1397 20 6 3.7902 7.6183 1.1316 21 6 3.7065 9.1254 1.3817 22 6 3.3276 3.6850 0.0005 23 6 4.0742 2.5224 0.0011 24 8 5.4326 2.5876 0.0011 25 6 6.0195 3.8904 -0.0001 26 6 3.4373 1.2837 0.0064 27 8 4.1751 0.1421 0.0125 28 6 4.5328 -0.4060 -1.2578 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 0.2145 2.3136 -0.0005 33 1 0.0532 4.7968 0.0000 34 1 2.8267 6.1079 -0.0004 35 1 3.0395 11.7439 -0.7342 36 1 3.5271 8.7050 -0.8228 37 1 3.1884 6.9682 1.7667 38 1 4.7532 7.2123 0.8217 39 1 4.6143 9.7110 1.2363 40 1 3.0494 9.4675 2.1815 41 1 3.8221 4.6451 0.0006 42 1 7.1057 3.7997 -0.0004 43 1 5.7002 4.4321 -0.8905 44 1 5.7002 4.4335 0.8895 45 1 5.1190 -1.3130 -1.1100 46 1 3.6287 -0.6446 -1.8181 47 1 5.1237 0.3216 -1.8140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067686971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:49 Heat of formation + Delta-G solvation = -49.252658 kcal Electronic energy + Delta-G solvation = -30834.134844 eV Core-core repulsion = 26565.026463 eV Total energy + Delta-G solvation = -4269.108381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.78187 -39.18027 -39.04534 -37.76858 -36.81526 -36.12526 -33.53839 -32.55394 -31.26638 -29.82864 -29.39793 -27.90328 -27.18290 -26.70799 -25.30647 -23.46571 -22.03732 -21.90625 -21.57627 -20.64606 -18.66460 -18.24071 -17.35188 -17.10039 -16.93147 -16.54350 -16.26718 -15.91804 -15.58926 -15.26996 -15.04084 -14.77015 -14.58288 -14.50045 -14.35940 -14.01916 -13.47140 -13.14921 -13.05024 -12.74080 -12.62226 -12.46009 -12.13000 -11.89196 -11.69573 -11.60579 -11.47640 -11.28289 -11.12878 -11.07437 -10.95739 -10.85356 -10.55349 -10.44126 -9.98630 -9.95210 -9.51254 -9.21948 -8.99236 -8.47113 -8.22486 -7.95123 -7.73845 -6.49663 -3.94404 0.65872 1.38165 2.24239 2.75473 3.09602 3.15634 3.20961 3.55295 3.56065 3.94990 3.97945 4.36761 4.54374 4.62052 4.83002 4.88425 4.98603 5.03997 5.05426 5.08442 5.12847 5.13367 5.16934 5.33080 5.34831 5.37792 5.39732 5.45657 5.59503 5.63380 5.68589 5.75884 5.91608 6.05234 6.10704 6.16021 6.20066 6.30252 6.41470 6.62166 6.80073 6.85065 6.95411 7.00026 7.11019 7.20319 7.37324 7.69141 7.94949 8.34163 9.04304 9.24427 9.87746 10.51056 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002734 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.693644 B =10239.340404 C =11625.977215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.149 3.851 4 C -0.226 4.226 5 C 0.037 3.963 6 C -0.103 4.103 7 C -0.140 4.140 8 C 0.455 3.545 9 O -0.599 6.599 10 N -0.401 5.401 11 C -0.295 4.295 12 H 0.106 0.894 13 C 0.035 3.965 14 N -0.859 5.859 15 Si 0.928 3.072 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.267 1.267 19 C 0.133 3.867 20 C -0.231 4.231 21 C -0.144 4.144 22 C -0.230 4.230 23 C 0.152 3.848 24 O -0.305 6.305 25 C 0.022 3.978 26 C 0.015 3.985 27 O -0.313 6.313 28 C 0.035 3.965 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.271 0.729 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.140 0.860 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.088 0.912 46 H 0.042 0.958 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.197 -15.715 -0.031 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.103 3.897 4 C -0.246 4.246 5 C 0.036 3.964 6 C -0.125 4.125 7 C -0.161 4.161 8 C 0.249 3.751 9 O -0.488 6.488 10 N -0.117 5.117 11 C -0.423 4.423 12 H 0.123 0.877 13 C -0.171 4.171 14 N -0.496 5.496 15 Si 0.755 3.245 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.192 1.192 19 C 0.028 3.972 20 C -0.269 4.269 21 C -0.181 4.181 22 C -0.249 4.249 23 C 0.106 3.894 24 O -0.218 6.218 25 C -0.073 4.073 26 C -0.030 4.030 27 O -0.229 6.229 28 C -0.060 4.060 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.082 0.918 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.158 0.842 42 H 0.119 0.881 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.106 0.894 46 H 0.061 0.939 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.058 -15.938 0.002 17.051 hybrid contribution -0.475 1.509 -0.084 1.585 sum 5.583 -14.429 -0.082 15.472 Atomic orbital electron populations 1.23124 0.78212 1.03901 1.01846 1.86119 1.21354 1.26031 1.88388 1.18792 0.90496 0.84784 0.95617 1.21206 1.00222 0.90714 1.12410 1.18688 0.91898 0.92799 0.92966 1.22043 0.99640 0.89872 1.00944 1.22703 1.00792 0.93750 0.98840 1.16685 0.88105 0.83724 0.86598 1.90659 1.14195 1.86844 1.57080 1.43300 1.03805 1.05833 1.58735 1.19816 0.96201 0.82826 1.43477 0.87665 1.25379 0.96299 0.99665 0.95757 1.69875 1.14384 1.26296 1.39034 0.85874 0.80026 0.80335 0.78309 1.20166 1.20705 1.19167 1.21249 0.81142 0.99993 0.94842 1.23706 1.01963 0.95194 1.05989 1.22771 1.02016 0.92532 1.00813 1.21352 0.94019 0.97435 1.12138 1.18803 0.82886 0.92447 0.95267 1.86114 1.16456 1.30993 1.88262 1.23168 0.98924 0.83144 1.02055 1.16991 0.86264 0.84525 1.15252 1.86118 1.70420 1.37707 1.28611 1.22957 0.99343 0.98276 0.85407 0.88208 0.92281 0.92378 0.84493 0.84958 0.85614 0.91828 0.86554 0.89231 0.89260 0.89426 0.89500 0.84205 0.88080 0.92240 0.92103 0.89351 0.93923 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.93 10.27 -34.49 -0.35 -4.28 16 3 C 0.15 2.12 6.69 -39.22 -0.26 1.86 16 4 C -0.23 -3.15 8.77 -38.96 -0.34 -3.49 16 5 C 0.04 0.57 5.87 -105.07 -0.62 -0.05 16 6 C -0.10 -1.81 9.41 -37.16 -0.35 -2.16 16 7 C -0.14 -2.71 7.40 -39.32 -0.29 -3.00 16 8 C 0.46 11.11 7.32 -14.90 -0.11 11.00 16 9 O -0.60 -16.67 15.80 5.12 0.08 -16.59 16 10 N -0.40 -9.93 2.93 -110.89 -0.32 -10.25 16 11 C -0.30 -7.87 9.22 -15.04 -0.14 -8.01 16 12 H 0.11 2.97 7.36 -52.49 -0.39 2.58 16 13 C 0.03 0.87 5.05 -17.44 -0.09 0.78 16 14 N -0.86 -21.01 10.09 55.50 0.56 -20.45 16 15 Si 0.93 19.71 29.56 -169.99 -5.03 14.69 16 16 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 19 C 0.13 2.79 3.58 -67.93 -0.24 2.55 16 20 C -0.23 -3.85 7.83 -26.73 -0.21 -4.06 16 21 C -0.14 -2.74 8.95 -26.73 -0.24 -2.98 16 22 C -0.23 -3.33 8.39 -38.95 -0.33 -3.66 16 23 C 0.15 2.22 6.69 -39.22 -0.26 1.95 16 24 O -0.31 -4.08 10.27 -34.48 -0.35 -4.43 16 25 C 0.02 0.21 9.81 101.05 0.99 1.20 16 26 C 0.02 0.23 5.76 -38.81 -0.22 0.00 16 27 O -0.31 -4.64 9.96 -44.90 -0.45 -5.08 16 28 C 0.03 0.39 11.13 101.05 1.12 1.51 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 31 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.14 1.63 6.28 -52.48 -0.33 1.30 16 33 H 0.13 2.42 7.46 -52.49 -0.39 2.03 16 34 H 0.13 2.14 3.15 -52.49 -0.17 1.97 16 35 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 36 H 0.12 2.55 7.66 -51.93 -0.40 2.15 16 37 H 0.09 1.53 7.06 -51.93 -0.37 1.17 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 41 H 0.14 1.86 4.37 -52.49 -0.23 1.63 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 44 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -31.69 389.30 -6.97 -38.65 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.37 Total: 7.22 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.59 Total: -5.34 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 0.23 Total: -30.70 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -1.07 Total: -30.39 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.69 -6.97 -38.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.601 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds