Wall clock time and date at job start Wed Apr 1 2020 05:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35998 * 116.99897 * 2 1 4 4 C 1.38176 * 119.96154 * 359.97438 * 3 2 1 5 5 C 1.39970 * 119.91929 * 179.97438 * 4 3 2 6 6 C 1.46939 * 120.08621 * 180.02562 * 5 4 3 7 7 C 1.35154 * 120.00344 * 180.02562 * 6 5 4 8 8 C 1.41794 * 119.99808 * 180.02562 * 7 6 5 9 9 O 1.21779 * 120.00365 * 354.30033 * 8 7 6 10 10 N 1.34782 * 119.99422 * 174.29886 * 8 7 6 11 11 C 1.36749 * 119.99579 * 184.63067 * 10 8 7 12 12 H 1.07996 * 120.00263 * 18.04995 * 11 10 8 13 13 C 1.39091 * 119.99612 * 198.04923 * 11 10 8 14 14 N 1.31344 * 120.00418 * 9.55692 * 13 11 10 15 15 Si 1.86805 * 119.99612 * 189.55494 * 13 11 10 16 16 H 1.48500 * 109.46834 * 90.00298 * 15 13 11 17 17 H 1.48503 * 109.46802 * 210.00038 * 15 13 11 18 18 H 1.48497 * 109.47287 * 329.99993 * 15 13 11 19 19 C 1.46499 * 120.00260 * 4.63909 * 10 8 7 20 20 C 1.53003 * 117.49324 * 308.54219 * 19 10 8 21 21 C 1.52999 * 117.49518 * 239.92305 * 19 10 8 22 22 C 1.39985 * 119.83665 * 0.02562 * 5 4 3 23 23 C 1.38172 * 119.91130 * 359.97438 * 22 5 4 24 24 O 1.35996 * 119.95697 * 179.97438 * 23 22 5 25 25 C 1.42895 * 117.00361 * 359.97438 * 24 23 22 26 26 C 1.39281 * 120.08504 * 359.74704 * 23 22 5 27 27 O 1.35922 * 119.92039 * 180.27192 * 26 23 22 28 28 C 1.42894 * 117.00178 * 270.23586 * 27 26 23 29 29 H 1.08998 * 109.47503 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47070 * 300.00337 * 1 2 3 31 31 H 1.09005 * 109.47186 * 60.00390 * 1 2 3 32 32 H 1.08006 * 120.04060 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.00104 * 0.02562 * 6 5 4 34 34 H 1.08002 * 119.99551 * 0.02562 * 7 6 5 35 35 H 0.96999 * 120.00145 * 179.97438 * 14 13 11 36 36 H 1.08992 * 115.55397 * 94.25007 * 19 10 8 37 37 H 1.09000 * 117.50376 * 0.02562 * 20 19 10 38 38 H 1.09007 * 117.49677 * 145.02221 * 20 19 10 39 39 H 1.09001 * 117.49844 * 214.97628 * 21 19 10 40 40 H 1.09008 * 117.50123 * 359.97438 * 21 19 10 41 41 H 1.07992 * 120.04680 * 179.97438 * 22 5 4 42 42 H 1.08996 * 109.47837 * 180.02562 * 25 24 23 43 43 H 1.09005 * 109.47177 * 300.00769 * 25 24 23 44 44 H 1.09006 * 109.46593 * 59.99952 * 25 24 23 45 45 H 1.09004 * 109.47097 * 179.97438 * 28 27 26 46 46 H 1.09001 * 109.47012 * 299.99569 * 28 27 26 47 47 H 1.08997 * 109.47334 * 60.00041 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2930 2.3701 -0.0005 5 6 1.9294 3.6168 0.0000 6 6 1.1318 4.8509 0.0000 7 6 1.7480 6.0538 0.0000 8 6 0.9783 7.2446 0.0006 9 8 -0.2336 7.1864 -0.1037 10 7 1.5881 8.4410 0.1165 11 6 0.8413 9.5825 0.2124 12 1 -0.2017 9.5241 0.4865 13 6 1.4250 10.8189 -0.0431 14 7 2.6326 10.8817 -0.5557 15 14 0.4913 12.3901 0.3428 16 1 0.7906 12.8147 1.7340 17 1 0.9080 13.4581 -0.6012 18 1 -0.9669 12.1467 0.2024 19 6 3.0508 8.5185 0.1397 20 6 3.7902 7.6183 1.1316 21 6 3.7065 9.1254 1.3817 22 6 3.3276 3.6850 0.0005 23 6 4.0742 2.5224 0.0011 24 8 5.4326 2.5876 0.0011 25 6 6.0195 3.8904 -0.0001 26 6 3.4373 1.2837 0.0064 27 8 4.1751 0.1421 0.0125 28 6 4.5328 -0.4060 -1.2578 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 0.2145 2.3136 -0.0005 33 1 0.0532 4.7968 0.0000 34 1 2.8267 6.1079 -0.0004 35 1 3.0395 11.7439 -0.7342 36 1 3.5271 8.7050 -0.8228 37 1 3.1884 6.9682 1.7667 38 1 4.7532 7.2123 0.8217 39 1 4.6143 9.7110 1.2363 40 1 3.0494 9.4675 2.1815 41 1 3.8221 4.6451 0.0006 42 1 7.1057 3.7997 -0.0004 43 1 5.7002 4.4321 -0.8905 44 1 5.7002 4.4335 0.8895 45 1 5.1190 -1.3130 -1.1100 46 1 3.6287 -0.6446 -1.8181 47 1 5.1237 0.3216 -1.8140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067686971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:48 Heat of formation + Delta-G solvation = -67.808813 kcal Electronic energy + Delta-G solvation = -30834.939499 eV Core-core repulsion = 26565.026463 eV Total energy + Delta-G solvation = -4269.913036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.84020 -40.89117 -40.00478 -38.80143 -38.13248 -37.66471 -35.21132 -34.00487 -33.11155 -30.93103 -30.53974 -28.72057 -28.02979 -27.96237 -26.80397 -24.85576 -23.36493 -23.18575 -22.97196 -22.04959 -20.06155 -19.46374 -18.91998 -18.41489 -18.02328 -17.80044 -17.33121 -17.22321 -16.95104 -16.44225 -16.09646 -16.00157 -15.94369 -15.73292 -15.53646 -15.45777 -15.07714 -14.69635 -14.29572 -13.90461 -13.74245 -13.60841 -13.47707 -13.09883 -12.97739 -12.74651 -12.61092 -12.49043 -12.42823 -12.39334 -12.25308 -12.15705 -12.11574 -11.98802 -11.68329 -11.09508 -10.96527 -10.72608 -10.47153 -10.34842 -9.79548 -9.27080 -8.98849 -8.34290 -5.92407 -0.60813 0.30110 0.87938 1.40100 1.40772 1.50773 1.84867 2.23811 2.33628 2.64474 2.67491 2.90170 2.94007 3.09901 3.22554 3.56614 3.84500 3.90920 4.05710 4.16315 4.21514 4.25785 4.33311 4.38423 4.40079 4.40271 4.44621 4.46851 4.51652 4.52413 4.62866 4.74535 4.77630 4.80292 4.81203 4.89477 5.00957 5.09506 5.12321 5.28660 5.37111 5.38019 5.39278 5.52544 5.60205 6.01972 6.04397 6.24824 6.48936 6.66400 7.14301 7.41720 8.02077 8.63791 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002734 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.693644 B =10239.340404 C =11625.977215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.318 6.318 3 C 0.144 3.856 4 C -0.217 4.217 5 C 0.015 3.985 6 C -0.063 4.063 7 C -0.166 4.166 8 C 0.447 3.553 9 O -0.650 6.650 10 N -0.415 5.415 11 C -0.342 4.342 12 H 0.071 0.929 13 C 0.011 3.989 14 N -0.866 5.866 15 Si 0.984 3.016 16 H -0.266 1.266 17 H -0.269 1.269 18 H -0.280 1.280 19 C 0.105 3.895 20 C -0.188 4.188 21 C -0.146 4.146 22 C -0.221 4.221 23 C 0.147 3.853 24 O -0.316 6.316 25 C 0.011 3.989 26 C 0.009 3.991 27 O -0.332 6.332 28 C 0.032 3.968 29 H 0.125 0.875 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.154 0.846 33 H 0.122 0.878 34 H 0.152 0.848 35 H 0.276 0.724 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.153 0.847 42 H 0.126 0.874 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.112 0.888 46 H 0.045 0.955 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.210 -17.411 0.079 19.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.231 6.231 3 C 0.098 3.902 4 C -0.236 4.236 5 C 0.014 3.986 6 C -0.085 4.085 7 C -0.186 4.186 8 C 0.242 3.758 9 O -0.542 6.542 10 N -0.129 5.129 11 C -0.470 4.470 12 H 0.089 0.911 13 C -0.194 4.194 14 N -0.502 5.502 15 Si 0.807 3.193 16 H -0.192 1.192 17 H -0.194 1.194 18 H -0.205 1.205 19 C 0.000 4.000 20 C -0.225 4.225 21 C -0.184 4.184 22 C -0.240 4.240 23 C 0.100 3.900 24 O -0.229 6.229 25 C -0.083 4.083 26 C -0.036 4.036 27 O -0.248 6.248 28 C -0.062 4.062 29 H 0.144 0.856 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.172 0.828 33 H 0.139 0.861 34 H 0.169 0.831 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.153 0.847 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.170 0.830 42 H 0.144 0.856 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.130 0.870 46 H 0.064 0.936 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.120 -17.645 0.110 19.424 hybrid contribution -1.078 1.695 -0.157 2.015 sum 7.042 -15.950 -0.047 17.436 Atomic orbital electron populations 1.23445 0.76111 1.05928 1.02494 1.86116 1.23504 1.25327 1.88132 1.18834 0.90490 0.85344 0.95558 1.21370 1.01184 0.90149 1.10876 1.18566 0.92294 0.92091 0.95624 1.22139 0.99392 0.90451 0.96511 1.22448 1.01530 0.91964 1.02662 1.17482 0.87928 0.85172 0.85221 1.90601 1.16533 1.87849 1.59206 1.43408 1.05359 1.05299 1.58873 1.19621 0.95622 0.84760 1.46993 0.91085 1.25951 0.97136 1.01301 0.95002 1.69943 1.14688 1.27026 1.38558 0.85075 0.78139 0.77333 0.78703 1.19150 1.19411 1.20480 1.21230 0.79309 1.04135 0.95280 1.23773 1.02689 0.93575 1.02483 1.22715 1.01762 0.94895 0.99013 1.21447 0.93545 0.98100 1.10923 1.18838 0.83645 0.92193 0.95323 1.86114 1.15622 1.33161 1.88046 1.23495 1.00273 0.81877 1.02688 1.17344 0.86878 0.85017 1.14403 1.86061 1.70489 1.37685 1.30595 1.23140 0.99833 0.99089 0.84139 0.85649 0.91727 0.91571 0.82814 0.86053 0.83066 0.91350 0.87781 0.89365 0.84702 0.88038 0.91821 0.82976 0.85600 0.91574 0.91387 0.86987 0.93631 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -7.48 10.27 -79.41 -0.82 -8.30 16 3 C 0.14 3.82 6.69 22.51 0.15 3.97 16 4 C -0.22 -5.62 8.77 22.67 0.20 -5.42 16 5 C 0.01 0.43 5.87 -20.16 -0.12 0.31 16 6 C -0.06 -2.18 9.41 23.84 0.22 -1.96 16 7 C -0.17 -6.40 7.40 22.44 0.17 -6.23 16 8 C 0.45 22.68 7.32 85.12 0.62 23.31 16 9 O -0.65 -38.19 15.80 -4.60 -0.07 -38.26 16 10 N -0.41 -21.34 2.93 -622.93 -1.82 -23.16 16 11 C -0.34 -19.23 9.22 84.13 0.78 -18.46 16 12 H 0.07 4.34 7.36 -2.91 -0.02 4.32 16 13 C 0.01 0.57 5.05 84.97 0.43 1.00 16 14 N -0.87 -42.78 10.09 21.69 0.22 -42.56 16 15 Si 0.98 41.34 29.56 68.60 2.03 43.36 16 16 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 17 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 19 C 0.10 4.41 3.58 44.99 0.16 4.57 16 20 C -0.19 -5.83 7.83 30.60 0.24 -5.59 16 21 C -0.15 -5.49 8.95 30.59 0.27 -5.21 16 22 C -0.22 -5.87 8.39 22.68 0.19 -5.68 16 23 C 0.15 3.94 6.69 22.51 0.15 4.09 16 24 O -0.32 -7.62 10.27 -79.40 -0.82 -8.43 16 25 C 0.01 0.17 9.81 113.37 1.11 1.28 16 26 C 0.01 0.25 5.76 22.77 0.13 0.38 16 27 O -0.33 -9.20 9.96 -68.39 -0.68 -9.88 16 28 C 0.03 0.64 11.13 113.37 1.26 1.90 16 29 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 31 H 0.07 0.89 7.66 -2.38 -0.02 0.87 16 32 H 0.15 3.35 6.28 -2.91 -0.02 3.33 16 33 H 0.12 4.47 7.46 -2.91 -0.02 4.45 16 34 H 0.15 4.89 3.15 -2.91 -0.01 4.88 16 35 H 0.28 12.74 8.31 -92.71 -0.77 11.97 16 36 H 0.10 4.58 7.66 -2.39 -0.02 4.56 16 37 H 0.09 2.83 7.06 -2.39 -0.02 2.81 16 38 H 0.14 2.97 8.14 -2.38 -0.02 2.95 16 39 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 41 H 0.15 3.56 4.37 -2.91 -0.01 3.55 16 42 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 0.98 7.66 -2.38 -0.02 0.96 16 44 H 0.07 1.00 7.66 -2.38 -0.02 0.98 16 45 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 47 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -72.78 389.30 6.12 -66.66 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 1.00 Total: 27.00 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 7.08 Total: -6.42 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -1.61 Total: -65.72 kcal Atomic # 8 Polarization: -62.50 SS G_CDS: -2.38 Total: -64.88 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Total: -72.78 6.12 -66.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.149 kcal (2) G-P(sol) polarization free energy of solvation -72.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds