Wall clock time and date at job start Wed Apr 1 2020 04:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35958 * 117.00173 * 2 1 4 4 C 1.38073 * 119.99929 * 359.97234 * 3 2 1 5 5 C 1.39983 * 119.83821 * 180.02562 * 4 3 2 6 6 C 1.46961 * 120.07892 * 180.02562 * 5 4 3 7 7 C 1.35019 * 120.00124 * 180.02562 * 6 5 4 8 8 C 1.46261 * 120.00061 * 179.97438 * 7 6 5 9 9 O 1.21717 * 120.00051 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99750 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00288 * 359.97438 * 10 8 7 12 12 C 1.46501 * 119.99758 * 179.97438 * 10 8 7 13 13 H 1.08994 * 110.43866 * 359.29939 * 12 10 8 14 14 C 1.54813 * 110.48797 * 121.84648 * 12 10 8 15 15 C 1.55344 * 101.93324 * 97.82295 * 14 12 10 16 16 O 1.44380 * 103.50331 * 37.05420 * 15 14 12 17 17 C 1.43746 * 106.97285 * 319.90801 * 16 15 14 18 18 C 1.40025 * 119.84064 * 359.97438 * 5 4 3 19 19 C 1.37650 * 120.00429 * 359.74790 * 18 5 4 20 20 C 1.39060 * 120.15612 * 0.50614 * 19 18 5 21 21 O 1.35612 * 119.91861 * 179.76128 * 20 19 18 22 22 C 1.34764 * 117.00236 * 354.38412 * 21 20 19 23 23 H 1.07996 * 119.99462 * 5.06434 * 22 21 20 24 24 C 1.38699 * 120.00063 * 185.06103 * 22 21 20 25 25 N 1.31520 * 120.00091 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00096 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46914 * 59.99847 * 26 24 22 28 28 H 1.48496 * 109.47210 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47125 * 300.00333 * 26 24 22 30 30 H 1.08997 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46888 * 300.00263 * 1 2 3 32 32 H 1.09007 * 109.46890 * 60.00048 * 1 2 3 33 33 H 1.08000 * 120.07983 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.99769 * 359.97438 * 6 5 4 35 35 H 1.08002 * 120.00107 * 359.97438 * 7 6 5 36 36 H 1.09000 * 109.46779 * 90.00306 * 11 10 8 37 37 H 1.09008 * 109.47264 * 209.99647 * 11 10 8 38 38 H 1.09002 * 109.47319 * 330.00023 * 11 10 8 39 39 H 1.09002 * 110.91014 * 215.99397 * 14 12 10 40 40 H 1.08998 * 110.91023 * 339.59978 * 14 12 10 41 41 H 1.09000 * 110.64555 * 278.53478 * 15 14 12 42 42 H 1.09004 * 110.72244 * 155.60793 * 15 14 12 43 43 H 1.09002 * 109.88114 * 267.08807 * 17 16 15 44 44 H 1.08996 * 109.87760 * 145.93798 * 17 16 15 45 45 H 1.08003 * 119.99780 * 180.02562 * 18 5 4 46 46 H 1.07996 * 119.92324 * 180.25331 * 19 18 5 47 47 H 0.97008 * 119.99915 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3694 -0.0006 5 6 1.9333 3.6148 -0.0011 6 6 1.1381 4.8507 -0.0012 7 6 1.7562 6.0511 -0.0022 8 6 0.9647 7.2811 -0.0028 9 8 -0.2510 7.2226 -0.0029 10 7 1.5817 8.4794 -0.0033 11 6 3.0450 8.5499 -0.0027 12 6 0.7890 9.7114 -0.0045 13 1 -0.2758 9.4788 -0.0173 14 6 1.1387 10.5819 1.2269 15 6 2.1503 11.5964 0.6263 16 8 1.6282 11.8506 -0.6955 17 6 1.1632 10.5924 -1.2122 18 6 3.3321 3.6802 -0.0005 19 6 4.0753 2.5217 0.0058 20 6 3.4406 1.2844 0.0010 21 8 4.1776 0.1461 0.0024 22 6 5.5137 0.2821 -0.1090 23 1 5.9578 1.2665 -0.1117 24 6 6.3184 -0.8421 -0.2200 25 7 5.7774 -2.0409 -0.2171 26 14 8.1705 -0.6536 -0.3737 27 1 8.6977 0.0481 0.8242 28 1 8.7978 -1.9957 -0.4768 29 1 8.4884 0.1367 -1.5902 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 0.2157 2.3144 -0.0006 34 1 0.0594 4.7987 -0.0012 35 1 2.8349 6.1032 -0.0026 36 1 3.4083 8.5667 -1.0303 37 1 3.3649 9.4568 0.5106 38 1 3.4506 7.6788 0.5119 39 1 0.2535 11.0923 1.6066 40 1 1.6048 9.9814 2.0081 41 1 3.1461 11.1571 0.5677 42 1 2.1710 12.5143 1.2139 43 1 1.9542 10.1135 -1.7893 44 1 0.2871 10.7510 -1.8409 45 1 3.8277 4.6398 -0.0005 46 1 5.1540 2.5737 0.0104 47 1 6.3403 -2.8272 -0.2944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106850040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:26 Heat of formation + Delta-G solvation = -84.423341 kcal Electronic energy + Delta-G solvation = -29507.560248 eV Core-core repulsion = 25236.926751 eV Total energy + Delta-G solvation = -4270.633496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.64223 -39.75336 -38.88037 -37.71151 -36.61179 -35.45061 -33.17288 -32.35874 -31.42306 -29.80992 -29.55138 -28.56276 -27.03959 -26.55016 -25.59572 -23.87293 -23.04644 -21.93848 -21.54150 -20.09891 -18.68172 -18.24379 -18.03972 -17.33844 -17.07700 -16.39726 -16.12137 -15.67300 -15.42997 -15.24028 -15.14335 -14.86996 -14.70134 -14.04062 -14.00606 -13.69451 -13.63482 -13.54171 -13.45552 -13.02479 -12.79779 -12.43575 -12.24747 -12.17332 -12.06143 -11.84631 -11.73120 -11.67528 -11.47288 -11.40156 -11.12385 -11.05614 -10.82170 -10.74764 -10.55020 -10.06141 -9.81467 -9.62331 -9.46231 -8.93638 -8.81195 -8.02634 -6.95866 -6.65424 -4.16714 0.95112 2.07233 2.46134 2.78028 3.02321 3.04026 3.07048 3.45120 3.57508 3.79854 3.90945 4.19796 4.39846 4.43013 4.58694 4.64875 4.70198 4.81450 4.86596 4.96429 4.98704 5.07080 5.20726 5.29400 5.31680 5.38151 5.40043 5.51367 5.51876 5.53968 5.55383 5.59309 5.65616 5.69224 5.80545 5.95678 6.12857 6.18315 6.36014 6.41552 6.50482 6.56275 6.79557 6.95221 7.04155 7.20379 7.27736 7.43090 7.74802 8.03928 8.18402 8.77331 9.45783 10.50136 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.002126 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.931302 B =13168.419104 C =14981.969180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.135 4.135 5 C -0.169 4.169 6 C 0.040 3.960 7 C -0.284 4.284 8 C 0.559 3.441 9 O -0.557 6.557 10 N -0.613 5.613 11 C 0.070 3.930 12 C 0.108 3.892 13 H 0.116 0.884 14 C -0.166 4.166 15 C 0.042 3.958 16 O -0.376 6.376 17 C 0.037 3.963 18 C -0.058 4.058 19 C -0.225 4.225 20 C 0.149 3.851 21 O -0.146 6.146 22 C -0.391 4.391 23 H 0.097 0.903 24 C 0.042 3.958 25 N -0.844 5.844 26 Si 0.945 3.055 27 H -0.267 1.267 28 H -0.276 1.276 29 H -0.267 1.267 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.115 0.885 46 H 0.138 0.862 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.467 19.542 1.359 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.170 4.170 6 C 0.020 3.980 7 C -0.304 4.304 8 C 0.354 3.646 9 O -0.437 6.437 10 N -0.346 5.346 11 C -0.072 4.072 12 C 0.003 3.997 13 H 0.134 0.866 14 C -0.205 4.205 15 C -0.035 4.035 16 O -0.294 6.294 17 C -0.041 4.041 18 C -0.076 4.076 19 C -0.245 4.245 20 C 0.092 3.908 21 O -0.046 6.046 22 C -0.466 4.466 23 H 0.115 0.885 24 C -0.165 4.165 25 N -0.475 5.475 26 Si 0.769 3.231 27 H -0.192 1.192 28 H -0.201 1.201 29 H -0.192 1.192 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.133 0.867 46 H 0.155 0.845 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.966 18.974 1.245 19.929 hybrid contribution 0.838 0.080 0.029 0.842 sum -5.128 19.054 1.274 19.773 Atomic orbital electron populations 1.22921 0.80141 1.03098 1.00426 1.86237 1.19595 1.26179 1.89702 1.18047 0.89379 0.84623 1.07273 1.20881 0.98608 0.90912 1.05079 1.18153 0.92777 0.91373 1.14687 1.22262 0.99128 0.91001 0.85596 1.22518 0.99942 0.91406 1.16570 1.18471 0.87483 0.83715 0.74974 1.90760 1.14252 1.87271 1.51417 1.47694 1.06780 1.05203 1.74955 1.21959 0.79588 1.03503 1.02186 1.22351 0.98543 0.84576 0.94195 0.86601 1.23565 1.00768 0.97952 0.98179 1.23774 0.96498 0.99429 0.83770 1.88902 1.80520 1.29156 1.30845 1.23586 1.00129 0.84330 0.96051 1.20911 0.92475 0.97301 0.96933 1.20825 1.00708 0.90732 1.12238 1.18887 0.88275 0.87647 0.96012 1.83988 1.19699 1.25871 1.75064 1.21477 0.78308 0.95086 1.51775 0.88533 1.25421 1.00945 0.94139 0.96038 1.70039 1.36820 0.97861 1.42811 0.85712 0.79704 0.78256 0.79436 1.19217 1.20058 1.19199 0.88944 0.93447 0.93419 0.85847 0.86018 0.85473 0.92415 0.91051 0.90022 0.89372 0.89397 0.91799 0.88754 0.91510 0.88995 0.86710 0.84498 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.38 10.28 -34.22 -0.35 -6.73 16 3 C 0.05 1.09 6.70 -39.13 -0.26 0.83 16 4 C -0.14 -2.40 8.77 -38.99 -0.34 -2.74 16 5 C -0.17 -2.84 5.87 -105.04 -0.62 -3.46 16 6 C 0.04 0.59 9.45 -37.19 -0.35 0.24 16 7 C -0.28 -3.80 8.60 -37.50 -0.32 -4.12 16 8 C 0.56 7.73 7.60 -13.04 -0.10 7.63 16 9 O -0.56 -9.43 15.59 5.17 0.08 -9.35 16 10 N -0.61 -6.46 2.76 -173.88 -0.48 -6.94 16 11 C 0.07 0.54 9.07 59.85 0.54 1.09 16 12 C 0.11 1.03 3.49 -66.40 -0.23 0.80 16 13 H 0.12 1.29 6.97 -51.93 -0.36 0.93 16 14 C -0.17 -1.24 6.29 -24.53 -0.15 -1.39 16 15 C 0.04 0.29 7.36 38.40 0.28 0.57 16 16 O -0.38 -3.62 11.52 -35.23 -0.41 -4.03 16 17 C 0.04 0.33 7.21 37.73 0.27 0.60 16 18 C -0.06 -0.99 9.40 -39.13 -0.37 -1.35 16 19 C -0.23 -4.54 9.14 -39.49 -0.36 -4.90 16 20 C 0.15 3.48 6.67 -38.76 -0.26 3.23 16 21 O -0.15 -4.03 9.52 -13.95 -0.13 -4.16 16 22 C -0.39 -10.32 9.48 30.90 0.29 -10.03 16 23 H 0.10 2.29 5.18 -52.49 -0.27 2.02 16 24 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 25 N -0.84 -23.68 13.67 55.48 0.76 -22.93 16 26 Si 0.95 19.21 29.55 -169.99 -5.02 14.19 16 27 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 28 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 29 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 32 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.12 1.84 6.28 -52.49 -0.33 1.51 16 34 H 0.12 1.80 7.52 -52.49 -0.39 1.40 16 35 H 0.13 1.47 4.21 -52.49 -0.22 1.25 16 36 H 0.06 0.41 7.86 -51.93 -0.41 0.01 16 37 H 0.07 0.43 4.92 -51.92 -0.26 0.18 16 38 H 0.08 0.60 6.09 -51.93 -0.32 0.29 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.65 8.02 -51.93 -0.42 0.23 16 41 H 0.06 0.39 6.01 -51.93 -0.31 0.07 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.59 7.09 -51.93 -0.37 0.22 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.12 1.58 6.15 -52.48 -0.32 1.26 16 46 H 0.14 2.67 5.61 -52.49 -0.29 2.37 16 47 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -32.57 382.74 -6.76 -39.34 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.89 Total: 5.44 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -1.08 Total: -10.59 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 0.28 Total: -29.87 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.81 Total: -24.27 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.57 -6.76 -39.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106850040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.088 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds