Wall clock time and date at job start Wed Apr 1 2020 04:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99951 * 2 1 4 4 C 1.38731 * 120.05406 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94597 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05332 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94665 * 180.02562 * 6 5 4 8 8 N 1.46494 * 109.47051 * 89.99959 * 7 6 5 9 9 C 1.46867 * 124.34218 * 269.97566 * 8 7 6 10 10 C 1.54474 * 105.42574 * 197.02356 * 9 8 7 11 11 H 1.09003 * 110.96790 * 216.44267 * 10 9 8 12 12 C 1.50696 * 110.97336 * 92.71908 * 10 9 8 13 13 O 1.20833 * 119.99655 * 3.08231 * 12 10 9 14 14 O 1.34231 * 120.00640 * 183.36502 * 12 10 9 15 15 C 1.45193 * 117.00126 * 179.71955 * 14 12 10 16 16 C 1.53006 * 109.46665 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.46788 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00388 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99872 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99802 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47007 * 90.00215 * 21 19 17 23 23 H 1.48496 * 109.46956 * 210.00227 * 21 19 17 24 24 H 1.48499 * 109.46971 * 330.00343 * 21 19 17 25 25 C 1.54624 * 101.80004 * 334.57722 * 10 9 8 26 26 C 1.34415 * 124.35149 * 89.98024 * 8 7 6 27 27 O 1.21283 * 124.94380 * 359.61914 * 26 8 7 28 28 C 1.38269 * 120.11206 * 0.27598 * 6 5 4 29 29 C 1.38144 * 120.05339 * 359.44765 * 28 6 5 30 30 H 1.08996 * 109.47047 * 60.00144 * 1 2 3 31 31 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46894 * 300.00529 * 1 2 3 33 33 H 1.08001 * 120.02955 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.97681 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.46802 * 330.00253 * 7 6 5 36 36 H 1.09001 * 109.47236 * 210.00169 * 7 6 5 37 37 H 1.09004 * 110.25716 * 78.03990 * 9 8 7 38 38 H 1.09004 * 110.27955 * 316.01784 * 9 8 7 39 39 H 1.08997 * 109.47488 * 299.99586 * 15 14 12 40 40 H 1.08997 * 109.47515 * 60.00401 * 15 14 12 41 41 H 1.08997 * 109.47361 * 299.99752 * 16 15 14 42 42 H 1.08997 * 109.47194 * 60.00320 * 16 15 14 43 43 H 0.97000 * 119.99313 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.48888 * 143.49377 * 25 10 9 45 45 H 1.09000 * 110.49081 * 266.13973 * 25 10 9 46 46 H 1.07992 * 119.97376 * 179.70539 * 28 6 5 47 47 H 1.08001 * 120.03193 * 180.27622 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0562 2.5169 -0.0011 6 6 3.3020 3.6758 -0.0016 7 6 3.9861 5.0186 -0.0028 8 7 4.2073 5.4527 -1.3843 9 6 5.4131 5.1481 -2.1655 10 6 5.3986 6.1421 -3.3479 11 1 5.7802 5.6743 -4.2554 12 6 6.1810 7.3866 -3.0160 13 8 6.7597 7.4723 -1.9588 14 8 6.2303 8.4021 -3.8924 15 6 6.9975 9.5718 -3.5034 16 6 6.9386 10.6151 -4.6211 17 6 7.7355 11.8289 -4.2176 18 1 8.2337 11.8540 -3.2598 19 6 7.8284 12.9075 -5.0715 20 7 7.2213 12.8772 -6.2377 21 14 8.8156 14.4125 -4.5711 22 1 10.2224 14.2530 -5.0190 23 1 8.2290 15.6216 -5.2027 24 1 8.7800 14.5590 -3.0938 25 6 3.8901 6.4554 -3.4791 26 6 3.3329 6.1809 -2.0997 27 8 2.2543 6.5630 -1.6977 28 6 1.9211 3.6048 0.0042 29 6 1.2916 2.3752 -0.0011 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.0208 0.3799 -0.0005 34 1 5.1346 2.5750 -0.0019 35 1 4.9442 4.9386 0.5108 36 1 3.3582 5.7467 0.5108 37 1 5.3752 4.1230 -2.5339 38 1 6.3052 5.2983 -1.5573 39 1 6.5789 9.9936 -2.5898 40 1 8.0345 9.2848 -3.3292 41 1 7.3576 10.1931 -5.5345 42 1 5.9018 10.9023 -4.7958 43 1 7.2871 13.6360 -6.8385 44 1 3.7396 7.5003 -3.7504 45 1 3.4267 5.7986 -4.2154 46 1 1.3343 4.5114 0.0085 47 1 0.2130 2.3202 -0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171107545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:33 Heat of formation + Delta-G solvation = -136.407411 kcal Electronic energy + Delta-G solvation = -29438.797385 eV Core-core repulsion = 25165.909690 eV Total energy + Delta-G solvation = -4272.887695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.15858 -40.43521 -39.54514 -37.95104 -36.72214 -35.90455 -33.76053 -33.33450 -31.45200 -30.74056 -30.15336 -28.03227 -27.92576 -26.18364 -25.19569 -23.65989 -22.90883 -21.74814 -21.05710 -20.29642 -19.60583 -18.53286 -17.87355 -17.07274 -16.76688 -16.56658 -16.15581 -16.10586 -16.00341 -15.92399 -15.24784 -15.03776 -14.58007 -14.45433 -14.21309 -13.86570 -13.76259 -13.63157 -13.43918 -12.98876 -12.95972 -12.60137 -12.44096 -12.37732 -12.21699 -12.00738 -11.95513 -11.65021 -11.43605 -11.27196 -11.12803 -11.07753 -10.79675 -10.71743 -10.28393 -9.96029 -9.71100 -9.66313 -9.33951 -9.33193 -8.97222 -8.49565 -8.46782 -6.12818 -4.17393 0.96341 1.03281 2.37341 2.45671 2.77468 2.86541 2.98037 3.27110 3.33484 3.37622 3.51392 4.03938 4.12194 4.36334 4.42173 4.49755 4.53991 4.57039 4.66582 4.71431 4.83852 4.92592 5.00185 5.04062 5.15023 5.17437 5.23217 5.23927 5.33281 5.35326 5.44483 5.54211 5.65690 5.70920 5.89174 6.01862 6.02031 6.03392 6.23676 6.30954 6.39306 6.58181 6.88133 6.91855 6.99160 7.51479 7.58330 7.82661 8.01273 8.07562 8.20903 8.87972 9.47252 10.98557 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.001707 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.870236 B =16397.722174 C =16603.311941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.155 4.155 5 C -0.064 4.064 6 C -0.145 4.145 7 C 0.171 3.829 8 N -0.611 5.611 9 C 0.114 3.886 10 C -0.099 4.099 11 H 0.136 0.864 12 C 0.462 3.538 13 O -0.510 6.510 14 O -0.352 6.352 15 C 0.076 3.924 16 C 0.024 3.976 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.146 4.146 26 C 0.519 3.481 27 O -0.527 6.527 28 C -0.055 4.055 29 C -0.210 4.210 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.264 0.736 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.129 0.871 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.505 -27.201 10.565 31.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.083 3.917 4 C -0.174 4.174 5 C -0.083 4.083 6 C -0.147 4.147 7 C 0.050 3.950 8 N -0.345 5.345 9 C -0.009 4.009 10 C -0.119 4.119 11 H 0.154 0.846 12 C 0.304 3.696 13 O -0.399 6.399 14 O -0.268 6.268 15 C 0.003 3.997 16 C -0.013 4.013 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.186 4.186 26 C 0.307 3.693 27 O -0.404 6.404 28 C -0.074 4.074 29 C -0.229 4.229 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.147 0.853 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.850 -27.006 10.998 31.113 hybrid contribution 0.395 0.980 0.200 1.075 sum -10.455 -26.026 11.198 30.200 Atomic orbital electron populations 1.23068 0.78261 1.03972 1.01514 1.86063 1.21516 1.27039 1.88650 1.19094 0.92452 0.84109 0.96015 1.20403 0.91318 0.98648 1.07029 1.20876 0.99794 0.90873 0.96732 1.20156 0.93933 0.95474 1.05123 1.20183 1.00973 0.92297 0.81534 1.48272 1.19295 1.53412 1.13537 1.22107 0.89177 0.97577 0.92071 1.21947 0.95661 0.92707 1.01554 0.84630 1.23058 0.78960 0.85164 0.82416 1.90635 1.43401 1.81062 1.24815 1.86509 1.67466 1.26504 1.46319 1.23692 0.93289 0.81599 1.01099 1.19178 0.98705 0.90832 0.92559 1.20970 1.32209 1.00021 1.03427 0.92268 1.24980 0.95610 0.98674 0.94829 1.69972 1.42714 1.31360 1.08670 0.86469 0.80052 0.81953 0.78827 1.20468 1.21023 1.19730 1.22376 0.92932 1.06740 0.96509 1.20854 0.84027 0.76971 0.87475 1.90712 1.21296 1.53218 1.75125 1.20988 0.94103 0.97341 0.94928 1.21254 1.00115 0.92285 1.09206 0.92538 0.88194 0.92579 0.85161 0.85202 0.89148 0.89122 0.89693 0.88219 0.92278 0.92179 0.95286 0.95291 0.92685 0.86444 0.86249 0.85267 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.79 10.50 -19.43 -0.20 -2.99 16 3 C 0.13 1.19 6.69 -39.22 -0.26 0.93 16 4 C -0.16 -1.32 9.99 -39.43 -0.39 -1.71 16 5 C -0.06 -0.51 9.69 -39.60 -0.38 -0.89 16 6 C -0.15 -1.34 5.46 -104.60 -0.57 -1.91 16 7 C 0.17 1.64 6.05 -5.20 -0.03 1.61 16 8 N -0.61 -6.65 2.92 -173.71 -0.51 -7.15 16 9 C 0.11 1.01 6.71 -3.07 -0.02 0.99 16 10 C -0.10 -1.02 3.65 -90.15 -0.33 -1.35 16 11 H 0.14 0.97 8.14 -51.93 -0.42 0.54 16 12 C 0.46 7.22 7.22 36.00 0.26 7.48 16 13 O -0.51 -9.15 15.26 -18.76 -0.29 -9.43 16 14 O -0.35 -6.56 10.10 -39.26 -0.40 -6.96 16 15 C 0.08 1.63 5.40 37.16 0.20 1.83 16 16 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 17 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 21 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 25 C -0.15 -1.57 6.40 -26.74 -0.17 -1.74 16 26 C 0.52 6.86 8.02 -10.86 -0.09 6.78 16 27 O -0.53 -8.73 17.60 5.56 0.10 -8.63 16 28 C -0.05 -0.54 9.69 -39.60 -0.38 -0.92 16 29 C -0.21 -1.89 9.04 -39.43 -0.36 -2.24 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.24 7.66 -51.93 -0.40 -0.15 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.09 0.96 7.87 -51.93 -0.41 0.55 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.94 6.98 -51.93 -0.36 0.58 16 39 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 40 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.12 1.45 7.80 -51.93 -0.41 1.05 16 45 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 47 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -34.75 401.99 -8.54 -43.29 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.91 Total: -2.15 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.10 Total: -2.94 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.23 Total: -32.49 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.79 Total: -28.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.75 -8.54 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171107545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.121 kcal (2) G-P(sol) polarization free energy of solvation -34.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds