Wall clock time and date at job start Wed Apr 1 2020 04:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99951 * 2 1 4 4 C 1.38731 * 120.05406 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94597 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05332 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94665 * 180.02562 * 6 5 4 8 8 N 1.46494 * 109.47051 * 89.99959 * 7 6 5 9 9 C 1.46867 * 124.34218 * 269.97566 * 8 7 6 10 10 C 1.54474 * 105.42574 * 197.02356 * 9 8 7 11 11 H 1.09003 * 110.96790 * 216.44267 * 10 9 8 12 12 C 1.50696 * 110.97336 * 92.71908 * 10 9 8 13 13 O 1.20833 * 119.99655 * 3.08231 * 12 10 9 14 14 O 1.34231 * 120.00640 * 183.36502 * 12 10 9 15 15 C 1.45193 * 117.00126 * 179.71955 * 14 12 10 16 16 C 1.53006 * 109.46665 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.46788 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00388 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99872 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99802 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47007 * 90.00215 * 21 19 17 23 23 H 1.48496 * 109.46956 * 210.00227 * 21 19 17 24 24 H 1.48499 * 109.46971 * 330.00343 * 21 19 17 25 25 C 1.54624 * 101.80004 * 334.57722 * 10 9 8 26 26 C 1.34415 * 124.35149 * 89.98024 * 8 7 6 27 27 O 1.21283 * 124.94380 * 359.61914 * 26 8 7 28 28 C 1.38269 * 120.11206 * 0.27598 * 6 5 4 29 29 C 1.38144 * 120.05339 * 359.44765 * 28 6 5 30 30 H 1.08996 * 109.47047 * 60.00144 * 1 2 3 31 31 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46894 * 300.00529 * 1 2 3 33 33 H 1.08001 * 120.02955 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.97681 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.46802 * 330.00253 * 7 6 5 36 36 H 1.09001 * 109.47236 * 210.00169 * 7 6 5 37 37 H 1.09004 * 110.25716 * 78.03990 * 9 8 7 38 38 H 1.09004 * 110.27955 * 316.01784 * 9 8 7 39 39 H 1.08997 * 109.47488 * 299.99586 * 15 14 12 40 40 H 1.08997 * 109.47515 * 60.00401 * 15 14 12 41 41 H 1.08997 * 109.47361 * 299.99752 * 16 15 14 42 42 H 1.08997 * 109.47194 * 60.00320 * 16 15 14 43 43 H 0.97000 * 119.99313 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.48888 * 143.49377 * 25 10 9 45 45 H 1.09000 * 110.49081 * 266.13973 * 25 10 9 46 46 H 1.07992 * 119.97376 * 179.70539 * 28 6 5 47 47 H 1.08001 * 120.03193 * 180.27622 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0562 2.5169 -0.0011 6 6 3.3020 3.6758 -0.0016 7 6 3.9861 5.0186 -0.0028 8 7 4.2073 5.4527 -1.3843 9 6 5.4131 5.1481 -2.1655 10 6 5.3986 6.1421 -3.3479 11 1 5.7802 5.6743 -4.2554 12 6 6.1810 7.3866 -3.0160 13 8 6.7597 7.4723 -1.9588 14 8 6.2303 8.4021 -3.8924 15 6 6.9975 9.5718 -3.5034 16 6 6.9386 10.6151 -4.6211 17 6 7.7355 11.8289 -4.2176 18 1 8.2337 11.8540 -3.2598 19 6 7.8284 12.9075 -5.0715 20 7 7.2213 12.8772 -6.2377 21 14 8.8156 14.4125 -4.5711 22 1 10.2224 14.2530 -5.0190 23 1 8.2290 15.6216 -5.2027 24 1 8.7800 14.5590 -3.0938 25 6 3.8901 6.4554 -3.4791 26 6 3.3329 6.1809 -2.0997 27 8 2.2543 6.5630 -1.6977 28 6 1.9211 3.6048 0.0042 29 6 1.2916 2.3752 -0.0011 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.0208 0.3799 -0.0005 34 1 5.1346 2.5750 -0.0019 35 1 4.9442 4.9386 0.5108 36 1 3.3582 5.7467 0.5108 37 1 5.3752 4.1230 -2.5339 38 1 6.3052 5.2983 -1.5573 39 1 6.5789 9.9936 -2.5898 40 1 8.0345 9.2848 -3.3292 41 1 7.3576 10.1931 -5.5345 42 1 5.9018 10.9023 -4.7958 43 1 7.2871 13.6360 -6.8385 44 1 3.7396 7.5003 -3.7504 45 1 3.4267 5.7986 -4.2154 46 1 1.3343 4.5114 0.0085 47 1 0.2130 2.3202 -0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171107545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:32 Heat of formation + Delta-G solvation = -156.754089 kcal Electronic energy + Delta-G solvation = -29439.679683 eV Core-core repulsion = 25165.909690 eV Total energy + Delta-G solvation = -4273.769993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.18427 -41.17286 -40.67950 -38.61074 -37.99509 -37.12440 -35.45988 -34.51876 -32.36667 -32.08003 -31.25707 -28.81746 -28.55173 -27.37351 -26.58344 -24.83813 -23.59350 -22.89336 -22.43026 -21.49978 -20.51018 -19.19658 -19.08804 -18.37266 -18.01944 -17.73580 -17.35796 -17.16764 -16.94219 -16.66307 -16.53268 -16.15459 -15.87993 -15.31081 -15.11455 -14.87470 -14.62557 -14.52971 -14.43565 -14.40202 -14.06946 -13.77179 -13.45523 -13.17061 -13.10563 -13.03306 -12.93186 -12.82027 -12.73698 -12.58220 -12.56573 -12.37840 -12.00029 -11.83379 -11.74387 -11.51570 -11.47257 -11.29004 -10.95794 -10.61096 -9.98754 -9.82417 -9.15736 -8.27238 -6.40286 0.30138 0.36642 1.12345 1.40575 1.42616 1.46504 1.53429 1.69723 2.02164 2.35146 2.39730 2.83399 3.07320 3.18689 3.27439 3.60425 3.75183 3.80505 3.85547 3.91422 4.12960 4.21659 4.23391 4.30883 4.33770 4.35000 4.39953 4.53323 4.57197 4.63574 4.66972 4.70087 4.70865 4.73429 4.81363 4.81843 5.05253 5.25592 5.27071 5.35746 5.44978 5.47301 5.55759 5.60765 5.74814 5.77192 6.04217 6.06471 6.39858 6.68689 6.74274 7.05564 7.29540 8.85067 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.001707 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.870236 B =16397.722174 C =16603.311941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.119 3.881 4 C -0.161 4.161 5 C -0.056 4.056 6 C -0.150 4.150 7 C 0.169 3.831 8 N -0.609 5.609 9 C 0.115 3.885 10 C -0.087 4.087 11 H 0.181 0.819 12 C 0.457 3.543 13 O -0.534 6.534 14 O -0.361 6.361 15 C 0.092 3.908 16 C 0.030 3.970 17 C -0.552 4.552 18 H 0.064 0.936 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.972 3.028 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.141 4.141 26 C 0.505 3.495 27 O -0.574 6.574 28 C -0.071 4.071 29 C -0.216 4.216 30 H 0.060 0.940 31 H 0.120 0.880 32 H 0.061 0.939 33 H 0.146 0.854 34 H 0.157 0.843 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.128 0.872 38 H 0.099 0.901 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.011 0.989 42 H 0.004 0.996 43 H 0.268 0.732 44 H 0.097 0.903 45 H 0.155 0.845 46 H 0.112 0.888 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.221 -29.122 10.721 32.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.073 3.927 4 C -0.179 4.179 5 C -0.075 4.075 6 C -0.151 4.151 7 C 0.048 3.952 8 N -0.341 5.341 9 C -0.007 4.007 10 C -0.105 4.105 11 H 0.198 0.802 12 C 0.301 3.699 13 O -0.424 6.424 14 O -0.277 6.277 15 C 0.019 3.981 16 C -0.007 4.007 17 C -0.590 4.590 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.564 5.564 21 Si 0.795 3.205 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.190 1.190 25 C -0.181 4.181 26 C 0.293 3.707 27 O -0.454 6.454 28 C -0.090 4.090 29 C -0.235 4.235 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.080 0.920 33 H 0.164 0.836 34 H 0.175 0.825 35 H 0.130 0.870 36 H 0.089 0.911 37 H 0.146 0.854 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.029 0.971 42 H 0.023 0.977 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.173 0.827 46 H 0.130 0.870 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.544 -28.969 11.168 32.481 hybrid contribution -0.068 1.475 0.188 1.489 sum -9.612 -27.493 11.356 31.261 Atomic orbital electron populations 1.23313 0.76683 1.05554 1.01999 1.86045 1.23251 1.26842 1.88580 1.19306 0.93059 0.84268 0.96040 1.20696 0.91248 0.99493 1.06484 1.21105 1.00996 0.89921 0.95437 1.20113 0.93622 0.95648 1.05744 1.20254 1.01750 0.92127 0.81053 1.48435 1.19356 1.52412 1.13921 1.22365 0.88015 0.99075 0.91200 1.22176 0.94180 0.90087 1.04103 0.80224 1.24195 0.78694 0.85535 0.81506 1.90625 1.44631 1.81477 1.25651 1.86498 1.67270 1.26500 1.47427 1.23127 0.93907 0.82215 0.98855 1.18981 0.96707 0.91790 0.93247 1.21385 1.32669 1.01145 1.03810 0.91811 1.25937 0.96583 1.01960 0.94687 1.70090 1.43958 1.32524 1.09794 0.85349 0.78643 0.77731 0.78737 1.19354 1.20477 1.18951 1.22407 0.93348 1.06403 0.95941 1.21344 0.83791 0.76915 0.88608 1.90683 1.23364 1.55158 1.76205 1.20976 0.94714 0.97122 0.96196 1.21361 1.00835 0.92032 1.09226 0.92167 0.86136 0.91991 0.83648 0.82502 0.87000 0.91142 0.85418 0.88318 0.92925 0.91763 0.97080 0.97732 0.92355 0.88480 0.82688 0.86952 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -5.38 10.50 -92.43 -0.97 -6.35 16 3 C 0.12 2.05 6.69 22.51 0.15 2.20 16 4 C -0.16 -2.37 9.99 22.37 0.22 -2.15 16 5 C -0.06 -0.75 9.69 22.26 0.22 -0.53 16 6 C -0.15 -2.59 5.46 -19.85 -0.11 -2.70 16 7 C 0.17 3.11 6.05 85.63 0.52 3.62 16 8 N -0.61 -12.32 2.92 -822.08 -2.40 -14.72 16 9 C 0.12 1.64 6.71 86.81 0.58 2.22 16 10 C -0.09 -1.52 3.65 -10.49 -0.04 -1.56 16 11 H 0.18 1.66 8.14 -2.39 -0.02 1.64 16 12 C 0.46 13.69 7.22 71.23 0.51 14.21 16 13 O -0.53 -18.62 15.26 21.94 0.33 -18.29 16 14 O -0.36 -13.38 10.10 -51.42 -0.52 -13.90 16 15 C 0.09 4.03 5.40 71.98 0.39 4.42 16 16 C 0.03 1.58 5.35 29.85 0.16 1.74 16 17 C -0.55 -31.15 9.11 25.60 0.23 -30.92 16 18 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 19 C 0.01 0.43 5.46 84.66 0.46 0.89 16 20 N -0.92 -54.96 13.29 21.45 0.28 -54.68 16 21 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 25 C -0.14 -2.81 6.40 30.59 0.20 -2.61 16 26 C 0.50 13.18 8.02 87.90 0.71 13.88 16 27 O -0.57 -19.79 17.60 -3.04 -0.05 -19.85 16 28 C -0.07 -1.42 9.69 22.25 0.22 -1.21 16 29 C -0.22 -3.81 9.04 22.37 0.20 -3.61 16 30 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 31 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.48 7.66 -2.39 -0.02 0.46 16 33 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.11 1.53 8.08 -2.39 -0.02 1.51 16 36 H 0.07 1.57 7.87 -2.39 -0.02 1.55 16 37 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.10 1.53 6.98 -2.39 -0.02 1.51 16 39 H 0.05 2.34 8.13 -2.39 -0.02 2.32 16 40 H 0.06 2.73 8.13 -2.39 -0.02 2.71 16 41 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.10 2.39 7.80 -2.39 -0.02 2.37 16 45 H 0.16 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.11 2.56 8.06 -2.91 -0.02 2.53 16 47 H 0.14 1.97 6.30 -2.91 -0.02 1.96 16 Total: -1.00 -78.08 401.99 5.41 -72.66 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.97 Total: 10.46 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 5.73 Total: -0.82 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -2.11 Total: -69.40 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -1.21 Total: -58.39 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -78.08 5.41 -72.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171107545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.091 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds