Wall clock time and date at job start Wed Apr 1 2020 05:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35953 * 117.00204 * 2 1 4 4 C 1.38085 * 119.99996 * 0.23501 * 3 2 1 5 5 C 1.39972 * 119.83908 * 180.29601 * 4 3 2 6 6 C 1.46960 * 120.07933 * 179.69959 * 5 4 3 7 7 C 1.35028 * 120.00073 * 180.02562 * 6 5 4 8 8 C 1.46260 * 120.00060 * 180.02562 * 7 6 5 9 9 O 1.21714 * 120.00154 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99782 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99787 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.52028 * 35.12326 * 11 10 8 13 13 C 1.53181 * 109.52011 * 155.31032 * 11 10 8 14 14 C 1.53179 * 109.03426 * 176.88690 * 13 11 10 15 15 C 1.53093 * 109.16155 * 303.02205 * 14 13 11 16 16 O 1.42906 * 109.41774 * 57.61018 * 15 14 13 17 17 C 1.42907 * 114.09381 * 298.83990 * 16 15 14 18 18 C 1.40035 * 119.84536 * 359.72339 * 5 4 3 19 19 C 1.37651 * 119.99640 * 0.02562 * 18 5 4 20 20 C 1.39062 * 120.16118 * 0.02562 * 19 18 5 21 21 O 1.35611 * 119.91928 * 179.97438 * 20 19 18 22 22 C 1.34760 * 117.00244 * 354.38892 * 21 20 19 23 23 H 1.07998 * 119.99640 * 5.05281 * 22 21 20 24 24 C 1.38707 * 120.00106 * 185.06269 * 22 21 20 25 25 N 1.31519 * 119.99982 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00180 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46868 * 89.99491 * 26 24 22 28 28 H 1.48497 * 109.47472 * 210.00034 * 26 24 22 29 29 H 1.48503 * 109.46769 * 330.00150 * 26 24 22 30 30 H 1.09001 * 109.47245 * 300.00640 * 1 2 3 31 31 H 1.09001 * 109.47234 * 59.99985 * 1 2 3 32 32 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.07645 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.00329 * 0.02562 * 6 5 4 35 35 H 1.08006 * 119.99861 * 0.02562 * 7 6 5 36 36 H 0.97000 * 120.00251 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.54093 * 296.75396 * 13 11 10 38 38 H 1.08999 * 109.54423 * 57.02114 * 13 11 10 39 39 H 1.08994 * 109.52535 * 183.11731 * 14 13 11 40 40 H 1.09001 * 109.57371 * 62.95456 * 14 13 11 41 41 H 1.08998 * 109.48539 * 297.62423 * 15 14 13 42 42 H 1.09006 * 109.48237 * 177.59272 * 15 14 13 43 43 H 1.08999 * 109.48081 * 301.17428 * 17 16 15 44 44 H 1.08997 * 109.48444 * 181.14552 * 17 16 15 45 45 H 1.07990 * 120.00346 * 180.02562 * 18 5 4 46 46 H 1.07993 * 119.91953 * 180.02562 * 19 18 5 47 47 H 0.96996 * 119.99928 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3694 0.0049 5 6 1.9332 3.6148 -0.0014 6 6 1.1380 4.8506 -0.0029 7 6 1.7561 6.0512 -0.0095 8 6 0.9646 7.2811 -0.0104 9 8 -0.2511 7.2226 -0.0047 10 7 1.5816 8.4794 -0.0175 11 6 0.7889 9.7114 -0.0190 12 1 -0.1125 9.5653 0.5764 13 6 1.6175 10.8539 0.5764 14 6 0.8077 12.1518 0.4981 15 6 0.4186 12.4142 -0.9591 16 8 -0.3230 11.3004 -1.4608 17 6 0.4005 10.0681 -1.4562 18 6 3.3320 3.6803 -0.0068 19 6 4.0753 2.5217 -0.0064 20 6 3.4405 1.2844 -0.0012 21 8 4.1776 0.1461 -0.0014 22 6 5.5127 0.2817 -0.1241 23 1 5.9568 1.2661 -0.1344 24 6 6.3165 -0.8431 -0.2373 25 7 5.7757 -2.0418 -0.2245 26 14 8.1672 -0.6551 -0.4081 27 1 8.7907 -0.6503 0.9397 28 1 8.7089 -1.7884 -1.2002 29 1 8.4731 0.6230 -1.0996 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2157 2.3144 0.0092 34 1 0.0593 4.7987 0.0013 35 1 2.8349 6.1031 -0.0141 36 1 2.5505 8.5261 -0.0216 37 1 1.8501 10.6315 1.6177 38 1 2.5425 10.9666 0.0108 39 1 1.4109 12.9805 0.8689 40 1 -0.0933 12.0572 1.1043 41 1 1.3196 12.5501 -1.5572 42 1 -0.1943 13.3140 -1.0154 43 1 1.3014 10.1732 -2.0607 44 1 -0.2252 9.2776 -1.8705 45 1 3.8277 4.6398 -0.0112 46 1 5.1539 2.5737 -0.0101 47 1 6.3379 -2.8283 -0.3033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171699274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:25 Heat of formation + Delta-G solvation = -107.377905 kcal Electronic energy + Delta-G solvation = -29010.402053 eV Core-core repulsion = 24738.773172 eV Total energy + Delta-G solvation = -4271.628881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.30144 -39.73196 -38.87702 -37.69535 -36.60423 -35.23793 -33.14368 -33.02613 -32.27651 -30.29315 -29.73289 -28.54052 -26.59000 -25.60902 -25.45054 -24.30424 -22.85436 -21.79275 -20.89846 -20.85408 -19.21650 -18.23648 -17.78819 -17.21198 -16.76309 -16.50813 -16.18273 -15.72596 -15.39648 -15.30674 -15.22213 -14.76561 -14.50572 -14.25620 -14.01337 -13.96849 -13.71218 -13.61395 -13.46749 -13.27075 -13.02568 -12.40963 -12.23492 -12.16071 -11.83324 -11.73641 -11.63052 -11.47896 -11.34173 -11.13814 -11.05146 -10.80878 -10.79872 -10.71863 -10.52810 -10.18292 -9.84640 -9.60931 -9.45303 -9.10852 -8.85283 -8.00982 -6.94228 -6.64186 -4.15456 0.98384 2.08774 2.49719 2.99526 3.02988 3.04068 3.09088 3.51303 3.65911 3.80821 3.92483 4.25717 4.39549 4.43948 4.48542 4.59997 4.82910 4.87315 4.94984 4.97641 4.99774 5.13816 5.18997 5.30304 5.37546 5.40660 5.45749 5.51089 5.53197 5.55632 5.58755 5.68175 5.70357 5.81376 5.83001 5.97204 6.17815 6.26119 6.38346 6.44113 6.55471 6.80998 6.84928 6.97619 7.06114 7.22890 7.44033 7.48071 7.76244 8.05482 8.27729 8.78771 9.47522 10.51540 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015063 B = 0.001878 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.473515 B =14906.984316 C =16471.040772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.168 4.168 6 C 0.038 3.962 7 C -0.281 4.281 8 C 0.556 3.444 9 O -0.555 6.555 10 N -0.728 5.728 11 C 0.114 3.886 12 H 0.096 0.904 13 C -0.131 4.131 14 C -0.152 4.152 15 C 0.055 3.945 16 O -0.378 6.378 17 C 0.052 3.948 18 C -0.059 4.059 19 C -0.225 4.225 20 C 0.149 3.851 21 O -0.147 6.147 22 C -0.391 4.391 23 H 0.098 0.902 24 C 0.041 3.959 25 N -0.844 5.844 26 Si 0.945 3.055 27 H -0.271 1.271 28 H -0.275 1.275 29 H -0.265 1.265 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.401 0.599 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.100 0.900 45 H 0.116 0.884 46 H 0.137 0.863 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.761 22.006 0.296 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.169 4.169 6 C 0.018 3.982 7 C -0.302 4.302 8 C 0.349 3.651 9 O -0.435 6.435 10 N -0.381 5.381 11 C 0.008 3.992 12 H 0.114 0.886 13 C -0.169 4.169 14 C -0.191 4.191 15 C -0.022 4.022 16 O -0.295 6.295 17 C -0.026 4.026 18 C -0.077 4.077 19 C -0.245 4.245 20 C 0.092 3.908 21 O -0.047 6.047 22 C -0.466 4.466 23 H 0.115 0.885 24 C -0.166 4.166 25 N -0.476 5.476 26 Si 0.769 3.231 27 H -0.196 1.196 28 H -0.200 1.200 29 H -0.189 1.189 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.235 0.765 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.118 0.882 45 H 0.134 0.866 46 H 0.155 0.845 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.697 21.259 0.228 22.290 hybrid contribution 1.538 0.282 0.071 1.565 sum -5.159 21.541 0.299 22.152 Atomic orbital electron populations 1.22921 0.80138 1.03094 1.00437 1.86236 1.19597 1.26187 1.89705 1.18049 0.89374 0.84623 1.07274 1.20888 0.98622 0.90921 1.05087 1.18164 0.92780 0.91404 1.14562 1.22245 0.99152 0.90967 0.85797 1.22434 0.99809 0.91544 1.16420 1.18461 0.87714 0.83895 0.75080 1.90787 1.14210 1.87617 1.50908 1.45833 1.10045 1.05097 1.77087 1.21515 0.96045 0.83978 0.97648 0.88644 1.21885 0.98637 0.94159 1.02173 1.22175 1.01107 0.97555 0.98221 1.22641 0.96657 0.89709 0.93161 1.87999 1.40713 1.16556 1.84241 1.23011 0.97220 0.86625 0.95741 1.20928 0.92488 0.97345 0.96944 1.20832 1.00711 0.90749 1.12202 1.18886 0.88275 0.87650 0.96014 1.83987 1.19775 1.25883 1.75091 1.21519 0.78422 0.95077 1.51593 0.88502 1.25421 1.00919 0.94149 0.96091 1.70045 1.36682 0.97828 1.43010 0.85644 0.79850 0.78710 0.78882 1.19621 1.20037 1.18924 0.93443 0.93410 0.88949 0.85832 0.85958 0.85755 0.76466 0.90566 0.91160 0.90321 0.90615 0.93075 0.88672 0.92992 0.88237 0.86617 0.84511 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.43 10.28 -34.21 -0.35 -6.78 16 3 C 0.05 1.10 6.70 -39.12 -0.26 0.84 16 4 C -0.14 -2.42 8.77 -38.99 -0.34 -2.77 16 5 C -0.17 -2.85 5.87 -105.04 -0.62 -3.47 16 6 C 0.04 0.57 9.45 -37.19 -0.35 0.22 16 7 C -0.28 -3.72 9.41 -37.50 -0.35 -4.07 16 8 C 0.56 7.51 7.70 -13.04 -0.10 7.41 16 9 O -0.56 -9.45 15.90 5.18 0.08 -9.37 16 10 N -0.73 -7.16 5.08 -55.11 -0.28 -7.43 16 11 C 0.11 1.07 2.65 -67.79 -0.18 0.89 16 12 H 0.10 1.13 7.58 -51.93 -0.39 0.74 16 13 C -0.13 -0.85 5.50 -26.55 -0.15 -1.00 16 14 C -0.15 -0.89 6.14 -26.59 -0.16 -1.06 16 15 C 0.06 0.37 6.84 37.21 0.25 0.63 16 16 O -0.38 -3.90 10.77 -35.23 -0.38 -4.28 16 17 C 0.05 0.52 6.42 37.20 0.24 0.76 16 18 C -0.06 -1.01 9.40 -39.12 -0.37 -1.38 16 19 C -0.23 -4.59 9.14 -39.49 -0.36 -4.95 16 20 C 0.15 3.51 6.67 -38.76 -0.26 3.25 16 21 O -0.15 -4.08 9.52 -13.94 -0.13 -4.21 16 22 C -0.39 -10.38 9.48 30.91 0.29 -10.09 16 23 H 0.10 2.32 5.18 -52.49 -0.27 2.05 16 24 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 25 N -0.84 -23.80 13.67 55.48 0.76 -23.04 16 26 Si 0.95 19.34 29.55 -169.99 -5.02 14.32 16 27 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 28 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 29 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 30 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 31 H 0.05 0.62 7.67 -51.93 -0.40 0.23 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.12 1.86 6.28 -52.49 -0.33 1.53 16 34 H 0.12 1.81 7.52 -52.49 -0.39 1.42 16 35 H 0.12 1.41 6.06 -52.48 -0.32 1.09 16 36 H 0.40 2.87 8.58 -40.82 -0.35 2.52 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.12 1.62 6.15 -52.49 -0.32 1.29 16 46 H 0.14 2.70 5.61 -52.49 -0.29 2.41 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 391.42 15.07 5.90 5.90 Total: -1.00 -32.89 391.42 -7.66 -40.55 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.41 Total: 6.72 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.82 Total: -12.37 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 0.48 Total: -30.48 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.78 Total: -24.64 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.89 -7.66 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171699274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.832 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds