Wall clock time and date at job start Wed Apr 1 2020 05:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35953 * 117.00204 * 2 1 4 4 C 1.38085 * 119.99996 * 0.23501 * 3 2 1 5 5 C 1.39972 * 119.83908 * 180.29601 * 4 3 2 6 6 C 1.46960 * 120.07933 * 179.69959 * 5 4 3 7 7 C 1.35028 * 120.00073 * 180.02562 * 6 5 4 8 8 C 1.46260 * 120.00060 * 180.02562 * 7 6 5 9 9 O 1.21714 * 120.00154 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99782 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99787 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.52028 * 35.12326 * 11 10 8 13 13 C 1.53181 * 109.52011 * 155.31032 * 11 10 8 14 14 C 1.53179 * 109.03426 * 176.88690 * 13 11 10 15 15 C 1.53093 * 109.16155 * 303.02205 * 14 13 11 16 16 O 1.42906 * 109.41774 * 57.61018 * 15 14 13 17 17 C 1.42907 * 114.09381 * 298.83990 * 16 15 14 18 18 C 1.40035 * 119.84536 * 359.72339 * 5 4 3 19 19 C 1.37651 * 119.99640 * 0.02562 * 18 5 4 20 20 C 1.39062 * 120.16118 * 0.02562 * 19 18 5 21 21 O 1.35611 * 119.91928 * 179.97438 * 20 19 18 22 22 C 1.34760 * 117.00244 * 354.38892 * 21 20 19 23 23 H 1.07998 * 119.99640 * 5.05281 * 22 21 20 24 24 C 1.38707 * 120.00106 * 185.06269 * 22 21 20 25 25 N 1.31519 * 119.99982 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00180 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46868 * 89.99491 * 26 24 22 28 28 H 1.48497 * 109.47472 * 210.00034 * 26 24 22 29 29 H 1.48503 * 109.46769 * 330.00150 * 26 24 22 30 30 H 1.09001 * 109.47245 * 300.00640 * 1 2 3 31 31 H 1.09001 * 109.47234 * 59.99985 * 1 2 3 32 32 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 33 33 H 1.08001 * 120.07645 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.00329 * 0.02562 * 6 5 4 35 35 H 1.08006 * 119.99861 * 0.02562 * 7 6 5 36 36 H 0.97000 * 120.00251 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.54093 * 296.75396 * 13 11 10 38 38 H 1.08999 * 109.54423 * 57.02114 * 13 11 10 39 39 H 1.08994 * 109.52535 * 183.11731 * 14 13 11 40 40 H 1.09001 * 109.57371 * 62.95456 * 14 13 11 41 41 H 1.08998 * 109.48539 * 297.62423 * 15 14 13 42 42 H 1.09006 * 109.48237 * 177.59272 * 15 14 13 43 43 H 1.08999 * 109.48081 * 301.17428 * 17 16 15 44 44 H 1.08997 * 109.48444 * 181.14552 * 17 16 15 45 45 H 1.07990 * 120.00346 * 180.02562 * 18 5 4 46 46 H 1.07993 * 119.91953 * 180.02562 * 19 18 5 47 47 H 0.96996 * 119.99928 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3694 0.0049 5 6 1.9332 3.6148 -0.0014 6 6 1.1380 4.8506 -0.0029 7 6 1.7561 6.0512 -0.0095 8 6 0.9646 7.2811 -0.0104 9 8 -0.2511 7.2226 -0.0047 10 7 1.5816 8.4794 -0.0175 11 6 0.7889 9.7114 -0.0190 12 1 -0.1125 9.5653 0.5764 13 6 1.6175 10.8539 0.5764 14 6 0.8077 12.1518 0.4981 15 6 0.4186 12.4142 -0.9591 16 8 -0.3230 11.3004 -1.4608 17 6 0.4005 10.0681 -1.4562 18 6 3.3320 3.6803 -0.0068 19 6 4.0753 2.5217 -0.0064 20 6 3.4405 1.2844 -0.0012 21 8 4.1776 0.1461 -0.0014 22 6 5.5127 0.2817 -0.1241 23 1 5.9568 1.2661 -0.1344 24 6 6.3165 -0.8431 -0.2373 25 7 5.7757 -2.0418 -0.2245 26 14 8.1672 -0.6551 -0.4081 27 1 8.7907 -0.6503 0.9397 28 1 8.7089 -1.7884 -1.2002 29 1 8.4731 0.6230 -1.0996 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2157 2.3144 0.0092 34 1 0.0593 4.7987 0.0013 35 1 2.8349 6.1031 -0.0141 36 1 2.5505 8.5261 -0.0216 37 1 1.8501 10.6315 1.6177 38 1 2.5425 10.9666 0.0108 39 1 1.4109 12.9805 0.8689 40 1 -0.0933 12.0572 1.1043 41 1 1.3196 12.5501 -1.5572 42 1 -0.1943 13.3140 -1.0154 43 1 1.3014 10.1732 -2.0607 44 1 -0.2252 9.2776 -1.8705 45 1 3.8277 4.6398 -0.0112 46 1 5.1539 2.5737 -0.0101 47 1 6.3379 -2.8283 -0.3033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171699274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:24 Heat of formation + Delta-G solvation = -130.360675 kcal Electronic energy + Delta-G solvation = -29011.398661 eV Core-core repulsion = 24738.773172 eV Total energy + Delta-G solvation = -4272.625489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.35479 -41.12194 -39.79054 -39.31414 -38.08955 -36.13779 -34.63084 -33.95544 -33.67941 -31.36467 -31.06365 -29.86415 -27.88053 -27.37071 -26.07850 -25.37354 -23.90148 -23.30484 -22.08581 -21.60501 -20.35522 -19.93904 -19.32446 -18.28892 -17.84890 -17.39801 -17.22719 -16.97907 -16.68294 -16.53583 -16.32027 -16.04412 -15.63892 -15.56673 -15.29793 -15.26156 -15.06485 -15.03893 -14.43543 -14.08155 -13.88113 -13.66003 -13.60807 -13.32671 -13.22606 -12.88377 -12.85184 -12.68475 -12.49464 -12.17106 -12.14968 -12.13332 -12.01643 -11.92681 -11.43668 -11.33663 -10.99727 -10.99068 -10.86321 -10.51600 -9.95565 -9.47679 -8.53410 -8.46881 -6.11438 -0.31758 0.54550 1.09997 1.37405 1.48061 1.55567 2.11737 2.17448 2.32834 2.55007 2.86382 2.98935 3.14501 3.35721 3.60664 3.74817 3.83559 3.92290 3.92786 4.03471 4.14113 4.17068 4.25426 4.32356 4.39605 4.41328 4.46478 4.52290 4.60453 4.62744 4.70368 4.71648 4.78620 4.87911 4.90872 5.01039 5.07633 5.10595 5.12282 5.24528 5.29175 5.42292 5.47685 5.51582 5.77195 5.92191 5.98102 6.20036 6.57577 6.59298 6.95542 7.25785 7.75845 8.74822 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015063 B = 0.001878 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.473515 B =14906.984316 C =16471.040772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.037 3.963 4 C -0.135 4.135 5 C -0.133 4.133 6 C 0.012 3.988 7 C -0.237 4.237 8 C 0.550 3.450 9 O -0.591 6.591 10 N -0.707 5.707 11 C 0.114 3.886 12 H 0.067 0.933 13 C -0.124 4.124 14 C -0.150 4.150 15 C 0.047 3.953 16 O -0.403 6.403 17 C 0.055 3.945 18 C -0.064 4.064 19 C -0.218 4.218 20 C 0.101 3.899 21 O -0.212 6.212 22 C -0.415 4.415 23 H 0.111 0.889 24 C -0.023 4.023 25 N -0.914 5.914 26 Si 1.022 2.978 27 H -0.263 1.263 28 H -0.275 1.275 29 H -0.247 1.247 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.154 0.846 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.419 0.581 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.160 0.840 46 H 0.138 0.862 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 27.212 0.379 27.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C -0.008 4.008 4 C -0.154 4.154 5 C -0.134 4.134 6 C -0.008 4.008 7 C -0.258 4.258 8 C 0.342 3.658 9 O -0.474 6.474 10 N -0.360 5.360 11 C 0.008 3.992 12 H 0.085 0.915 13 C -0.162 4.162 14 C -0.188 4.188 15 C -0.029 4.029 16 O -0.322 6.322 17 C -0.023 4.023 18 C -0.082 4.082 19 C -0.237 4.237 20 C 0.049 3.951 21 O -0.118 6.118 22 C -0.490 4.490 23 H 0.128 0.872 24 C -0.222 4.222 25 N -0.551 5.551 26 Si 0.840 3.160 27 H -0.187 1.187 28 H -0.199 1.199 29 H -0.170 1.170 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.171 0.829 34 H 0.143 0.857 35 H 0.173 0.827 36 H 0.257 0.743 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.125 0.875 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.177 0.823 46 H 0.156 0.844 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.332 26.577 0.317 27.322 hybrid contribution 0.919 -0.681 0.055 1.145 sum -5.413 25.896 0.372 26.458 Atomic orbital electron populations 1.23272 0.77120 1.04973 1.02053 1.86189 1.22926 1.26890 1.89889 1.18389 0.89167 0.85789 1.07427 1.21260 1.00077 0.90123 1.03901 1.18531 0.93071 0.91959 1.09862 1.22131 0.99247 0.90505 0.88880 1.22797 1.01244 0.90770 1.10974 1.18587 0.87209 0.84993 0.75036 1.90796 1.15972 1.88209 1.52440 1.45695 1.11069 1.04266 1.74931 1.21539 0.95687 0.84643 0.97304 0.91474 1.21883 0.98849 0.92875 1.02579 1.22175 1.01018 0.98105 0.97471 1.22904 0.97299 0.88861 0.93845 1.87966 1.42076 1.17364 1.84766 1.22892 0.97197 0.86219 0.95981 1.21304 0.92500 0.97970 0.96452 1.21048 1.01152 0.90773 1.10743 1.19591 0.89522 0.88193 0.97806 1.83977 1.20307 1.27861 1.79633 1.21992 0.78850 0.95924 1.52273 0.87184 1.26702 1.06219 0.93548 0.95691 1.70207 1.38542 0.98827 1.47550 0.84546 0.73071 0.79172 0.79167 1.18748 1.19944 1.17045 0.91616 0.91684 0.87234 0.82859 0.85723 0.82711 0.74320 0.89913 0.89038 0.87803 0.91741 0.91559 0.87510 0.91224 0.90944 0.82285 0.84435 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.70 16 2 O -0.34 -15.21 10.28 -79.04 -0.81 -16.02 16 3 C 0.04 1.62 6.70 22.57 0.15 1.77 16 4 C -0.13 -4.60 8.77 22.65 0.20 -4.40 16 5 C -0.13 -4.11 5.87 -20.14 -0.12 -4.22 16 6 C 0.01 0.32 9.45 23.82 0.23 0.54 16 7 C -0.24 -5.09 9.41 23.62 0.22 -4.86 16 8 C 0.55 12.83 7.70 86.33 0.66 13.50 16 9 O -0.59 -18.88 15.90 -4.39 -0.07 -18.95 16 10 N -0.71 -11.01 5.08 -446.48 -2.27 -13.27 16 11 C 0.11 1.83 2.65 45.08 0.12 1.95 16 12 H 0.07 1.50 7.58 -2.39 -0.02 1.48 16 13 C -0.12 -1.11 5.50 30.71 0.17 -0.94 16 14 C -0.15 -1.24 6.14 30.69 0.19 -1.05 16 15 C 0.05 0.49 6.84 72.01 0.49 0.98 16 16 O -0.40 -7.62 10.77 -148.98 -1.60 -9.22 16 17 C 0.06 0.98 6.42 72.01 0.46 1.44 16 18 C -0.06 -2.01 9.40 22.57 0.21 -1.80 16 19 C -0.22 -8.82 9.14 22.33 0.20 -8.61 16 20 C 0.10 4.99 6.67 22.80 0.15 5.14 16 21 O -0.21 -12.76 9.52 -6.54 -0.06 -12.82 16 22 C -0.41 -23.46 9.48 67.93 0.64 -22.82 16 23 H 0.11 5.52 5.18 -2.91 -0.02 5.50 16 24 C -0.02 -1.29 5.49 84.85 0.47 -0.83 16 25 N -0.91 -55.83 13.67 21.62 0.30 -55.53 16 26 Si 1.02 41.36 29.55 68.60 2.03 43.39 16 27 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 28 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 29 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 30 H 0.07 1.63 7.65 -2.39 -0.02 1.61 16 31 H 0.06 1.62 7.67 -2.39 -0.02 1.60 16 32 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.15 4.22 6.28 -2.91 -0.02 4.20 16 34 H 0.12 3.28 7.52 -2.91 -0.02 3.26 16 35 H 0.16 2.41 6.06 -2.91 -0.02 2.39 16 36 H 0.42 3.67 8.58 -92.71 -0.80 2.88 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.16 3.52 6.15 -2.92 -0.02 3.50 16 46 H 0.14 5.44 5.61 -2.91 -0.02 5.42 16 47 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -81.04 391.42 3.29 -77.75 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.22 Total: 27.20 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 5.57 Total: -22.51 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -1.97 Total: -68.81 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: -2.55 Total: -57.02 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -81.04 3.29 -77.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171699274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.613 kcal (2) G-P(sol) polarization free energy of solvation -81.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds