Wall clock time and date at job start Wed Apr 1 2020 04:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.46579 * 2 1 4 4 C 1.34240 * 116.99567 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99818 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99639 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47273 * 300.00243 * 6 4 3 8 8 C 1.53006 * 109.47088 * 60.00283 * 6 4 3 9 9 C 1.53007 * 109.46835 * 179.97438 * 6 4 3 10 10 N 1.46500 * 109.46992 * 175.00277 * 9 6 4 11 11 C 1.34770 * 120.00149 * 179.97438 * 10 9 6 12 12 O 1.21722 * 119.99697 * 0.02562 * 11 10 9 13 13 C 1.46250 * 120.00046 * 179.97438 * 11 10 9 14 14 C 1.35031 * 119.99722 * 180.02562 * 13 11 10 15 15 C 1.46959 * 119.99896 * 180.27394 * 14 13 11 16 16 C 1.40027 * 120.10017 * 359.45143 * 15 14 13 17 17 C 1.37601 * 119.89863 * 179.78912 * 16 15 14 18 18 C 1.39178 * 120.09610 * 0.48118 * 17 16 15 19 19 O 1.35575 * 119.89259 * 179.76441 * 18 17 16 20 20 C 1.34788 * 116.99533 * 174.42515 * 19 18 17 21 21 H 1.08001 * 120.00124 * 5.05799 * 20 19 18 22 22 C 1.38720 * 119.99795 * 185.06035 * 20 19 18 23 23 N 1.31507 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 119.99984 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47193 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47306 * 119.99699 * 24 22 20 27 27 H 1.48503 * 109.47196 * 239.99770 * 24 22 20 28 28 C 1.39170 * 120.20621 * 359.74800 * 18 17 16 29 29 C 1.37600 * 120.10262 * 0.02562 * 28 18 17 30 30 H 1.09000 * 109.47367 * 60.00388 * 1 2 3 31 31 H 1.09006 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47341 * 300.00134 * 1 2 3 33 33 H 1.08996 * 109.47341 * 239.99866 * 2 1 3 34 34 H 1.09000 * 109.47367 * 119.99612 * 2 1 3 35 35 H 1.09001 * 109.47104 * 179.97438 * 8 6 4 36 36 H 1.09001 * 109.46674 * 299.99276 * 8 6 4 37 37 H 1.09000 * 109.47398 * 59.99318 * 8 6 4 38 38 H 1.08994 * 109.46464 * 55.00205 * 9 6 4 39 39 H 1.09003 * 109.46757 * 295.00179 * 9 6 4 40 40 H 0.96999 * 119.99522 * 359.97438 * 10 9 6 41 41 H 1.07990 * 120.00180 * 359.97438 * 13 11 10 42 42 H 1.08000 * 120.00105 * 359.97438 * 14 13 11 43 43 H 1.08005 * 120.04944 * 359.97438 * 16 15 14 44 44 H 1.07995 * 119.95289 * 180.22906 * 17 16 15 45 45 H 0.97004 * 119.99419 * 180.02562 * 23 22 20 46 46 H 1.07998 * 119.95118 * 179.97438 * 28 18 17 47 47 H 1.07997 * 120.05056 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.5843 3.4694 -0.8911 8 6 3.4494 3.6848 1.2481 9 6 5.4485 2.8575 -0.0010 10 7 6.0082 4.2060 -0.1220 11 6 7.3442 4.3818 -0.1429 12 8 8.0859 3.4201 -0.0618 13 6 7.9028 5.7280 -0.2642 14 6 9.2414 5.9040 -0.2857 15 6 9.8028 7.2572 -0.4015 16 6 8.9515 8.3645 -0.5012 17 6 9.4816 9.6300 -0.6051 18 6 10.8617 9.8094 -0.6212 19 8 11.3796 11.0578 -0.7285 20 6 12.7180 11.1762 -0.6222 21 1 13.3336 10.2924 -0.5410 22 6 13.3049 12.4331 -0.6172 23 7 12.5554 13.5091 -0.7165 24 14 15.1597 12.5972 -0.4692 25 1 15.7699 11.2469 -0.3712 26 1 15.6920 13.2957 -1.6667 27 1 15.4919 13.3795 0.7486 28 6 11.7117 8.7115 -0.5271 29 6 11.1906 7.4426 -0.4183 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8663 4.6920 1.2479 36 1 2.3609 3.7419 1.2484 37 1 3.7857 3.1529 2.1381 38 1 5.7805 2.2495 -0.8426 39 1 5.7886 2.4052 0.9306 40 1 5.4170 4.9723 -0.1869 41 1 7.2448 6.5811 -0.3374 42 1 9.8995 5.0507 -0.2129 43 1 7.8805 8.2257 -0.4936 44 1 8.8259 10.4849 -0.6783 45 1 12.9659 14.3880 -0.7134 46 1 12.7820 8.8554 -0.5405 47 1 11.8509 6.5912 -0.3449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175181301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:47 Heat of formation + Delta-G solvation = -121.739596 kcal Electronic energy + Delta-G solvation = -27853.241346 eV Core-core repulsion = 23580.989695 eV Total energy + Delta-G solvation = -4272.251651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.09750 -39.62815 -39.13494 -37.37743 -36.90552 -35.97204 -33.24163 -33.00480 -32.29967 -31.92694 -30.43937 -28.50891 -26.92793 -25.70922 -25.12631 -23.41376 -22.65060 -22.12615 -20.84318 -20.79363 -19.37023 -18.23414 -18.13191 -17.28168 -17.13090 -17.11891 -16.50099 -15.75930 -15.58167 -14.97388 -14.77603 -14.70856 -14.40992 -14.12188 -14.01784 -13.88467 -13.79989 -13.42366 -13.26789 -13.11072 -13.03744 -12.75829 -12.60030 -12.44156 -12.12467 -11.95141 -11.91693 -11.74844 -11.72372 -11.62584 -11.15172 -11.08259 -11.02587 -10.80715 -10.67074 -10.53667 -9.83659 -9.61947 -9.50318 -9.20172 -8.86285 -8.39105 -7.12531 -6.66214 -4.20956 1.05948 1.73733 2.05024 2.12738 2.54799 3.03073 3.04482 3.10133 3.24501 3.56967 3.81587 3.97939 4.26106 4.32014 4.42131 4.46396 4.50232 4.64057 4.75387 4.91424 4.97805 5.03544 5.11302 5.20914 5.23020 5.25023 5.26867 5.39761 5.45284 5.51979 5.56210 5.63160 5.65987 5.69602 5.96515 6.00517 6.10891 6.26519 6.45393 6.47205 6.59721 6.78243 6.91227 7.12218 7.22768 7.26977 7.27539 7.48657 7.63030 7.79371 8.31162 8.78842 9.45630 10.50490 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.039796 B = 0.001308 C = 0.001274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.419400 B =21400.090823 C =21968.210719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.356 6.356 4 C 0.471 3.529 5 O -0.500 6.500 6 C -0.095 4.095 7 H 0.117 0.883 8 C -0.147 4.147 9 C 0.136 3.864 10 N -0.734 5.734 11 C 0.557 3.443 12 O -0.554 6.554 13 C -0.284 4.284 14 C 0.040 3.960 15 C -0.200 4.200 16 C -0.043 4.043 17 C -0.199 4.199 18 C 0.167 3.833 19 O -0.163 6.163 20 C -0.393 4.393 21 H 0.098 0.902 22 C 0.042 3.958 23 N -0.852 5.852 24 Si 0.945 3.055 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.242 4.242 29 C -0.034 4.034 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.400 0.600 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.274 0.726 46 H 0.131 0.869 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.194 -19.186 1.829 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.273 6.273 4 C 0.312 3.688 5 O -0.387 6.387 6 C -0.115 4.115 7 H 0.135 0.865 8 C -0.204 4.204 9 C 0.012 3.988 10 N -0.387 5.387 11 C 0.349 3.651 12 O -0.434 6.434 13 C -0.305 4.305 14 C 0.020 3.980 15 C -0.201 4.201 16 C -0.061 4.061 17 C -0.219 4.219 18 C 0.110 3.890 19 O -0.064 6.064 20 C -0.469 4.469 21 H 0.115 0.885 22 C -0.164 4.164 23 N -0.484 5.484 24 Si 0.769 3.231 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.261 4.261 29 C -0.053 4.053 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.235 0.765 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.084 0.916 46 H 0.149 0.851 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.533 -19.687 1.844 28.506 hybrid contribution 0.573 0.286 -0.018 0.641 sum -19.960 -19.402 1.827 27.896 Atomic orbital electron populations 1.21813 0.92415 1.03125 1.03629 1.23073 0.95489 0.79938 1.02805 1.86491 1.24232 1.32647 1.83937 1.23397 0.80766 0.92167 0.72422 1.90721 1.60347 1.43016 1.44630 1.21214 0.96064 0.90977 1.03234 0.86482 1.21826 1.02493 1.00748 0.95332 1.21044 0.88975 0.84847 1.03937 1.45777 1.07350 1.08531 1.77062 1.18399 0.81286 0.89974 0.75433 1.90800 1.59066 1.42855 1.50726 1.22392 0.96507 0.94879 1.16685 1.22299 0.94676 0.95542 0.85470 1.18465 0.93332 0.91940 1.16341 1.20880 0.98331 0.91236 0.95650 1.20149 0.92443 0.97290 1.11988 1.19618 0.92543 0.85653 0.91142 1.83906 1.24788 1.22693 1.74972 1.21533 0.78748 0.94437 1.52133 0.88471 1.25391 1.00986 0.94031 0.96024 1.70023 1.36164 0.98282 1.43971 0.85586 0.79901 0.79170 0.78486 1.18839 1.19908 1.19900 1.21103 1.00645 0.92143 1.12238 1.20994 0.93642 0.96321 0.94316 0.91378 0.90121 0.91386 0.91081 0.91085 0.90506 0.90764 0.91639 0.90486 0.90555 0.76521 0.85812 0.85907 0.86390 0.86127 0.91645 0.85113 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 10.29 37.16 0.38 -0.17 16 2 C 0.06 0.36 6.19 37.16 0.23 0.59 16 3 O -0.36 -2.71 10.12 -39.28 -0.40 -3.11 16 4 C 0.47 4.15 7.26 36.01 0.26 4.41 16 5 O -0.50 -6.03 15.67 -18.75 -0.29 -6.32 16 6 C -0.10 -0.63 2.87 -91.76 -0.26 -0.89 16 7 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 8 C -0.15 -0.75 9.00 37.16 0.33 -0.41 16 9 C 0.14 1.32 4.41 -4.04 -0.02 1.30 16 10 N -0.73 -7.08 5.28 -61.76 -0.33 -7.40 16 11 C 0.56 7.65 7.74 -13.04 -0.10 7.55 16 12 O -0.55 -9.84 16.23 5.17 0.08 -9.76 16 13 C -0.28 -3.74 9.41 -37.50 -0.35 -4.09 16 14 C 0.04 0.60 9.45 -37.19 -0.35 0.25 16 15 C -0.20 -3.36 5.87 -105.03 -0.62 -3.97 16 16 C -0.04 -0.71 9.40 -39.14 -0.37 -1.08 16 17 C -0.20 -3.92 9.97 -39.47 -0.39 -4.32 16 18 C 0.17 3.80 6.66 -38.89 -0.26 3.54 16 19 O -0.16 -4.39 9.74 0.70 0.01 -4.38 16 20 C -0.39 -10.39 9.48 30.91 0.29 -10.09 16 21 H 0.10 2.37 5.18 -52.49 -0.27 2.09 16 22 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 23 N -0.85 -23.70 13.67 55.48 0.76 -22.94 16 24 Si 0.94 19.44 29.55 -169.99 -5.02 14.42 16 25 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 28 C -0.24 -4.97 9.14 -39.47 -0.36 -5.33 16 29 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 34 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 35 H 0.08 0.32 7.18 -51.93 -0.37 -0.06 16 36 H 0.07 0.32 8.11 -51.93 -0.42 -0.10 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 2.58 7.63 -40.82 -0.31 2.27 16 41 H 0.12 1.35 6.06 -52.49 -0.32 1.03 16 42 H 0.12 1.85 7.52 -52.49 -0.39 1.46 16 43 H 0.12 1.57 6.16 -52.48 -0.32 1.25 16 44 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.13 2.67 5.62 -52.49 -0.29 2.37 16 47 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 404.96 15.07 6.10 6.10 Total: -1.00 -33.13 404.96 -7.63 -40.76 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.48 Total: 5.34 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -2.06 Total: -12.71 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 0.43 Total: -30.34 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.60 Total: -23.57 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.13 -7.63 -40.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175181301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.975 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds