Wall clock time and date at job start Wed Apr 1 2020 04:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45196 * 109.46862 * 2 1 4 4 C 1.34234 * 116.99915 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99656 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00215 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.46541 * 60.00329 * 6 4 3 8 8 C 1.52996 * 109.47187 * 300.00699 * 6 4 3 9 9 C 1.52995 * 109.47256 * 180.02562 * 6 4 3 10 10 N 1.46500 * 109.47101 * 184.99978 * 9 6 4 11 11 C 1.34780 * 120.00085 * 180.02562 * 10 9 6 12 12 O 1.21727 * 119.99701 * 0.02562 * 11 10 9 13 13 C 1.46250 * 120.00001 * 180.27770 * 11 10 9 14 14 C 1.35025 * 119.99872 * 172.93753 * 13 11 10 15 15 C 1.46960 * 119.99925 * 348.68575 * 14 13 11 16 16 C 1.40028 * 120.10009 * 316.40557 * 15 14 13 17 17 C 1.37594 * 119.89430 * 179.72348 * 16 15 14 18 18 C 1.39178 * 120.10545 * 0.57472 * 17 16 15 19 19 O 1.35570 * 119.89974 * 179.70498 * 18 17 16 20 20 C 1.34784 * 116.99709 * 174.33776 * 19 18 17 21 21 H 1.08003 * 120.00118 * 5.06382 * 20 19 18 22 22 C 1.38719 * 120.00009 * 185.05536 * 20 19 18 23 23 N 1.31512 * 119.99551 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00225 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47164 * 90.00280 * 24 22 20 26 26 H 1.48501 * 109.46981 * 209.99935 * 24 22 20 27 27 H 1.48497 * 109.47030 * 330.00247 * 24 22 20 28 28 C 1.39179 * 120.19889 * 359.67528 * 18 17 16 29 29 C 1.37596 * 120.10342 * 0.04860 * 28 18 17 30 30 H 1.08998 * 109.46945 * 60.00361 * 1 2 3 31 31 H 1.09007 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47261 * 299.99984 * 1 2 3 33 33 H 1.08994 * 109.47153 * 239.99600 * 2 1 3 34 34 H 1.08998 * 109.46945 * 119.99639 * 2 1 3 35 35 H 1.09002 * 109.46965 * 299.99819 * 8 6 4 36 36 H 1.09003 * 109.47377 * 59.99396 * 8 6 4 37 37 H 1.09002 * 109.47544 * 179.97438 * 8 6 4 38 38 H 1.09004 * 109.47004 * 65.00243 * 9 6 4 39 39 H 1.08994 * 109.47448 * 305.00450 * 9 6 4 40 40 H 0.96995 * 120.00304 * 0.02562 * 10 9 6 41 41 H 1.07994 * 119.99828 * 352.93725 * 13 11 10 42 42 H 1.07997 * 120.00191 * 168.68458 * 14 13 11 43 43 H 1.08001 * 120.04804 * 359.97438 * 16 15 14 44 44 H 1.08010 * 119.94843 * 180.27620 * 17 16 15 45 45 H 0.97006 * 119.99836 * 179.97438 * 23 22 20 46 46 H 1.08002 * 119.94590 * 180.02562 * 28 18 17 47 47 H 1.07995 * 120.05096 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4700 0.8896 8 6 3.4497 3.6837 -1.2498 9 6 5.4486 2.8574 0.0001 10 7 6.0083 4.2060 0.1200 11 6 7.3444 4.3817 0.1409 12 8 8.0861 3.4199 0.0598 13 6 7.9030 5.7275 0.2667 14 6 9.2329 5.8937 0.4311 15 6 10.0865 4.7359 0.7322 16 6 9.6739 3.7852 1.6739 17 6 10.4738 2.6999 1.9483 18 6 11.6967 2.5523 1.3004 19 8 12.4843 1.4844 1.5784 20 6 13.5987 1.3361 0.8351 21 1 13.8727 2.0934 0.1154 22 6 14.3940 0.2107 0.9944 23 7 14.0602 -0.7116 1.8704 24 14 15.9390 0.0054 -0.0353 25 1 17.0918 0.6154 0.6747 26 1 16.2003 -1.4402 -0.2529 27 1 15.7530 0.6776 -1.3463 28 6 12.1133 3.4975 0.3676 29 6 11.3174 4.5831 0.0825 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.7860 3.1511 -2.1394 36 1 2.3612 3.7407 -1.2503 37 1 3.8659 4.6911 -1.2500 38 1 5.7888 2.4043 -0.9311 39 1 5.7806 2.2501 0.8421 40 1 5.4173 4.9724 0.1842 41 1 7.2519 6.5882 0.2280 42 1 9.6693 6.8775 0.3414 43 1 8.7274 3.9017 2.1809 44 1 10.1544 1.9637 2.6712 45 1 14.6161 -1.4988 1.9816 46 1 13.0628 3.3787 -0.1331 47 1 11.6413 5.3158 -0.6418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255598626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:55 Heat of formation + Delta-G solvation = -102.372159 kcal Electronic energy + Delta-G solvation = -29233.439374 eV Core-core repulsion = 24962.027559 eV Total energy + Delta-G solvation = -4271.411816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.96583 -39.72453 -38.70003 -37.29057 -36.56495 -35.66407 -33.04026 -32.88683 -32.09854 -31.81131 -30.08281 -28.25684 -26.82995 -25.45291 -25.01014 -23.29508 -22.44145 -21.73860 -20.93228 -20.68420 -19.29696 -18.02573 -17.90237 -17.28069 -17.05035 -16.70777 -16.30892 -15.65012 -15.42893 -14.75289 -14.60718 -14.46198 -14.25066 -13.98008 -13.88133 -13.63014 -13.45060 -13.27809 -13.10847 -12.99528 -12.91090 -12.68259 -12.47174 -12.30445 -12.14750 -12.01488 -11.73406 -11.66518 -11.51065 -11.33357 -10.98478 -10.90311 -10.66710 -10.65729 -10.58622 -10.38368 -9.49204 -9.39861 -9.13085 -8.99359 -8.66629 -7.88831 -6.83113 -6.42431 -3.98072 1.26246 1.87985 2.17341 2.46192 2.73318 3.15799 3.17584 3.21863 3.38420 3.65489 4.00073 4.10105 4.37427 4.42810 4.53127 4.57400 4.73042 4.74426 4.87048 5.06922 5.14469 5.20262 5.24360 5.28578 5.33303 5.34942 5.39350 5.52822 5.55258 5.60473 5.71310 5.76354 5.84302 5.88112 6.09401 6.28363 6.35244 6.42791 6.48896 6.63069 6.82329 7.07116 7.15788 7.39715 7.41612 7.47976 7.54115 7.64350 7.95889 8.04268 8.54766 9.03108 9.75405 10.75426 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.002122 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.797725 B =13189.781170 C =15077.656430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.468 3.532 5 O -0.495 6.495 6 C -0.094 4.094 7 H 0.115 0.885 8 C -0.145 4.145 9 C 0.136 3.864 10 N -0.737 5.737 11 C 0.539 3.461 12 O -0.506 6.506 13 C -0.268 4.268 14 C 0.029 3.971 15 C -0.191 4.191 16 C 0.012 3.988 17 C -0.202 4.202 18 C 0.172 3.828 19 O -0.173 6.173 20 C -0.389 4.389 21 H 0.094 0.906 22 C 0.038 3.962 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.251 4.251 29 C -0.041 4.041 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.395 0.605 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.270 0.730 46 H 0.126 0.874 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.538 11.485 -4.498 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.309 3.691 5 O -0.381 6.381 6 C -0.113 4.113 7 H 0.133 0.867 8 C -0.202 4.202 9 C 0.011 3.989 10 N -0.392 5.392 11 C 0.329 3.671 12 O -0.381 6.381 13 C -0.289 4.289 14 C 0.010 3.990 15 C -0.192 4.192 16 C -0.007 4.007 17 C -0.221 4.221 18 C 0.117 3.883 19 O -0.075 6.075 20 C -0.465 4.465 21 H 0.111 0.889 22 C -0.166 4.166 23 N -0.494 5.494 24 Si 0.767 3.233 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.191 1.191 28 C -0.270 4.270 29 C -0.059 4.059 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.229 0.771 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.119 0.881 44 H 0.132 0.868 45 H 0.080 0.920 46 H 0.143 0.857 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.702 9.991 -4.312 26.993 hybrid contribution 0.316 0.082 -0.566 0.653 sum -24.386 10.073 -4.877 26.832 Atomic orbital electron populations 1.21809 0.92491 1.03100 1.03491 1.23070 0.95394 0.79997 1.02920 1.86472 1.24322 1.32621 1.84094 1.23403 0.80750 0.92236 0.72693 1.90755 1.60264 1.42933 1.44161 1.21197 0.96262 0.90931 1.02938 0.86675 1.21808 1.02292 1.00602 0.95547 1.21038 0.88695 0.84921 1.04199 1.45910 1.07380 1.08256 1.77608 1.18494 0.81272 0.90376 0.76995 1.91028 1.57605 1.42141 1.47365 1.22550 0.96454 0.95305 1.14585 1.22337 0.92601 0.97449 0.86627 1.18295 0.96762 0.98828 1.05357 1.20440 0.95039 0.91235 0.93946 1.20014 0.94569 1.00988 1.06569 1.19530 0.89885 0.87379 0.91538 1.83908 1.32086 1.38536 1.52956 1.21395 0.98968 1.06853 1.19333 0.88884 1.25335 0.99411 0.94517 0.97379 1.70030 1.37939 1.09052 1.32376 0.85692 0.80087 0.78074 0.79466 1.19854 1.20244 1.19138 1.20950 1.02784 0.97853 1.05421 1.20736 0.92283 0.96301 0.96623 0.91468 0.90132 0.91449 0.91063 0.91022 0.91648 0.90918 0.90723 0.90543 0.90328 0.77125 0.86112 0.86048 0.88092 0.86834 0.91973 0.85657 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.29 37.16 0.38 -0.34 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.36 -3.20 10.12 -39.27 -0.40 -3.60 16 4 C 0.47 4.90 7.26 36.01 0.26 5.17 16 5 O -0.50 -7.10 15.67 -18.75 -0.29 -7.40 16 6 C -0.09 -0.74 2.86 -91.78 -0.26 -1.00 16 7 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 8 C -0.15 -0.85 9.00 37.16 0.33 -0.51 16 9 C 0.14 1.55 4.41 -4.04 -0.02 1.53 16 10 N -0.74 -7.68 5.28 -61.76 -0.33 -8.01 16 11 C 0.54 7.87 6.77 -13.04 -0.09 7.78 16 12 O -0.51 -10.09 12.18 5.16 0.06 -10.03 16 13 C -0.27 -3.27 9.90 -37.51 -0.37 -3.64 16 14 C 0.03 0.41 9.80 -37.19 -0.36 0.05 16 15 C -0.19 -3.58 4.54 -105.02 -0.48 -4.06 16 16 C 0.01 0.24 6.59 -39.15 -0.26 -0.01 16 17 C -0.20 -4.77 9.97 -39.47 -0.39 -5.17 16 18 C 0.17 4.47 6.66 -38.88 -0.26 4.21 16 19 O -0.17 -5.18 9.74 0.73 0.01 -5.17 16 20 C -0.39 -11.30 9.48 30.91 0.29 -11.00 16 21 H 0.09 2.50 5.18 -52.48 -0.27 2.23 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 23 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 24 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 C -0.25 -5.84 9.14 -39.47 -0.36 -6.20 16 29 C -0.04 -0.81 9.78 -39.15 -0.38 -1.19 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 34 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 37 H 0.07 0.33 7.18 -51.93 -0.37 -0.04 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.09 7.96 -51.93 -0.41 0.68 16 40 H 0.39 2.61 7.63 -40.82 -0.31 2.29 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.10 1.87 7.02 -52.49 -0.37 1.51 16 44 H 0.11 2.63 8.06 -52.48 -0.42 2.21 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.13 2.88 5.62 -52.49 -0.29 2.58 16 47 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 400.06 15.07 6.03 6.03 Total: -1.00 -36.88 400.06 -7.68 -44.56 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.66 Total: 5.44 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -1.83 Total: -12.74 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.43 Total: -33.18 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.62 Total: -26.20 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.88 -7.68 -44.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255598626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.816 kcal (2) G-P(sol) polarization free energy of solvation -36.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds