Wall clock time and date at job start Wed Apr 1 2020 04:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45196 * 109.46862 * 2 1 4 4 C 1.34234 * 116.99915 * 179.97438 * 3 2 1 5 5 O 1.20820 * 119.99656 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00215 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.46541 * 60.00329 * 6 4 3 8 8 C 1.52996 * 109.47187 * 300.00699 * 6 4 3 9 9 C 1.52995 * 109.47256 * 180.02562 * 6 4 3 10 10 N 1.46500 * 109.47101 * 184.99978 * 9 6 4 11 11 C 1.34780 * 120.00085 * 180.02562 * 10 9 6 12 12 O 1.21727 * 119.99701 * 0.02562 * 11 10 9 13 13 C 1.46250 * 120.00001 * 180.27770 * 11 10 9 14 14 C 1.35025 * 119.99872 * 172.93753 * 13 11 10 15 15 C 1.46960 * 119.99925 * 348.68575 * 14 13 11 16 16 C 1.40028 * 120.10009 * 316.40557 * 15 14 13 17 17 C 1.37594 * 119.89430 * 179.72348 * 16 15 14 18 18 C 1.39178 * 120.10545 * 0.57472 * 17 16 15 19 19 O 1.35570 * 119.89974 * 179.70498 * 18 17 16 20 20 C 1.34784 * 116.99709 * 174.33776 * 19 18 17 21 21 H 1.08003 * 120.00118 * 5.06382 * 20 19 18 22 22 C 1.38719 * 120.00009 * 185.05536 * 20 19 18 23 23 N 1.31512 * 119.99551 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00225 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47164 * 90.00280 * 24 22 20 26 26 H 1.48501 * 109.46981 * 209.99935 * 24 22 20 27 27 H 1.48497 * 109.47030 * 330.00247 * 24 22 20 28 28 C 1.39179 * 120.19889 * 359.67528 * 18 17 16 29 29 C 1.37596 * 120.10342 * 0.04860 * 28 18 17 30 30 H 1.08998 * 109.46945 * 60.00361 * 1 2 3 31 31 H 1.09007 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47261 * 299.99984 * 1 2 3 33 33 H 1.08994 * 109.47153 * 239.99600 * 2 1 3 34 34 H 1.08998 * 109.46945 * 119.99639 * 2 1 3 35 35 H 1.09002 * 109.46965 * 299.99819 * 8 6 4 36 36 H 1.09003 * 109.47377 * 59.99396 * 8 6 4 37 37 H 1.09002 * 109.47544 * 179.97438 * 8 6 4 38 38 H 1.09004 * 109.47004 * 65.00243 * 9 6 4 39 39 H 1.08994 * 109.47448 * 305.00450 * 9 6 4 40 40 H 0.96995 * 120.00304 * 0.02562 * 10 9 6 41 41 H 1.07994 * 119.99828 * 352.93725 * 13 11 10 42 42 H 1.07997 * 120.00191 * 168.68458 * 14 13 11 43 43 H 1.08001 * 120.04804 * 359.97438 * 16 15 14 44 44 H 1.08010 * 119.94843 * 180.27620 * 17 16 15 45 45 H 0.97006 * 119.99836 * 179.97438 * 23 22 20 46 46 H 1.08002 * 119.94590 * 180.02562 * 28 18 17 47 47 H 1.07995 * 120.05096 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4700 0.8896 8 6 3.4497 3.6837 -1.2498 9 6 5.4486 2.8574 0.0001 10 7 6.0083 4.2060 0.1200 11 6 7.3444 4.3817 0.1409 12 8 8.0861 3.4199 0.0598 13 6 7.9030 5.7275 0.2667 14 6 9.2329 5.8937 0.4311 15 6 10.0865 4.7359 0.7322 16 6 9.6739 3.7852 1.6739 17 6 10.4738 2.6999 1.9483 18 6 11.6967 2.5523 1.3004 19 8 12.4843 1.4844 1.5784 20 6 13.5987 1.3361 0.8351 21 1 13.8727 2.0934 0.1154 22 6 14.3940 0.2107 0.9944 23 7 14.0602 -0.7116 1.8704 24 14 15.9390 0.0054 -0.0353 25 1 17.0918 0.6154 0.6747 26 1 16.2003 -1.4402 -0.2529 27 1 15.7530 0.6776 -1.3463 28 6 12.1133 3.4975 0.3676 29 6 11.3174 4.5831 0.0825 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.7860 3.1511 -2.1394 36 1 2.3612 3.7407 -1.2503 37 1 3.8659 4.6911 -1.2500 38 1 5.7888 2.4043 -0.9311 39 1 5.7806 2.2501 0.8421 40 1 5.4173 4.9724 0.1842 41 1 7.2519 6.5882 0.2280 42 1 9.6693 6.8775 0.3414 43 1 8.7274 3.9017 2.1809 44 1 10.1544 1.9637 2.6712 45 1 14.6161 -1.4988 1.9816 46 1 13.0628 3.3787 -0.1331 47 1 11.6413 5.3158 -0.6418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255598626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:54 Heat of formation + Delta-G solvation = -127.944407 kcal Electronic energy + Delta-G solvation = -29234.548270 eV Core-core repulsion = 24962.027559 eV Total energy + Delta-G solvation = -4272.520711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.82229 -41.07972 -40.38566 -38.40197 -37.92434 -36.77033 -34.59366 -34.00884 -33.68880 -32.42005 -31.82266 -29.74990 -27.82599 -27.31032 -25.88037 -24.31580 -23.56574 -23.31128 -22.35699 -21.52693 -20.54436 -19.77287 -18.93194 -18.83048 -18.15259 -17.82630 -17.24638 -16.67700 -16.55139 -16.31392 -16.20436 -15.78535 -15.62756 -15.43475 -15.07717 -14.77036 -14.63673 -14.54071 -14.37754 -14.16775 -13.82744 -13.72331 -13.60258 -13.56140 -13.26561 -13.02341 -12.96904 -12.65559 -12.57005 -12.50649 -12.35270 -12.22309 -12.18040 -12.12861 -11.58602 -11.51210 -11.24519 -10.97433 -10.69706 -10.38917 -10.08131 -9.58177 -8.55444 -8.49102 -6.16749 0.00812 0.71246 1.04306 1.13057 1.32076 1.42839 1.44763 1.51270 2.16370 2.43501 2.49536 2.86445 3.20247 3.32474 3.52400 3.71535 3.77075 3.96409 4.01841 4.04600 4.08719 4.11391 4.15889 4.18469 4.31664 4.54321 4.56029 4.62608 4.70461 4.77466 4.79253 4.85728 4.90505 4.93777 5.05941 5.09590 5.11546 5.23076 5.26164 5.28419 5.39264 5.45282 5.47737 5.68193 5.72467 5.85571 6.01682 6.25562 6.59668 6.71589 6.94336 7.46014 7.77074 8.74091 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.002122 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.797725 B =13189.781170 C =15077.656430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.350 6.350 4 C 0.467 3.533 5 O -0.545 6.545 6 C -0.081 4.081 7 H 0.150 0.850 8 C -0.141 4.141 9 C 0.139 3.861 10 N -0.708 5.708 11 C 0.524 3.476 12 O -0.570 6.570 13 C -0.225 4.225 14 C 0.004 3.996 15 C -0.160 4.160 16 C 0.013 3.987 17 C -0.224 4.224 18 C 0.125 3.875 19 O -0.233 6.233 20 C -0.415 4.415 21 H 0.103 0.897 22 C -0.027 4.027 23 N -0.922 5.922 24 Si 1.024 2.976 25 H -0.258 1.258 26 H -0.271 1.271 27 H -0.253 1.253 28 C -0.259 4.259 29 C -0.047 4.047 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.421 0.579 41 H 0.182 0.818 42 H 0.172 0.828 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.273 0.727 46 H 0.120 0.880 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.594 16.642 -6.338 33.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.267 6.267 4 C 0.310 3.690 5 O -0.435 6.435 6 C -0.100 4.100 7 H 0.168 0.832 8 C -0.198 4.198 9 C 0.014 3.986 10 N -0.363 5.363 11 C 0.315 3.685 12 O -0.450 6.450 13 C -0.245 4.245 14 C -0.015 4.015 15 C -0.161 4.161 16 C -0.005 4.005 17 C -0.244 4.244 18 C 0.074 3.926 19 O -0.139 6.139 20 C -0.491 4.491 21 H 0.120 0.880 22 C -0.224 4.224 23 N -0.560 5.560 24 Si 0.842 3.158 25 H -0.183 1.183 26 H -0.195 1.195 27 H -0.177 1.177 28 C -0.278 4.278 29 C -0.065 4.065 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.259 0.741 41 H 0.200 0.800 42 H 0.190 0.810 43 H 0.137 0.863 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.138 0.862 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -27.882 15.259 -6.158 32.376 hybrid contribution 0.710 -1.230 -0.036 1.421 sum -27.172 14.029 -6.194 31.201 Atomic orbital electron populations 1.21814 0.89895 1.04347 1.04032 1.23302 0.97394 0.79315 1.02292 1.86478 1.23315 1.33420 1.83476 1.24009 0.80946 0.92815 0.71184 1.90749 1.61378 1.44738 1.46624 1.21196 0.93171 0.89867 1.05773 0.83249 1.21844 1.03513 1.01042 0.93379 1.20836 0.91441 0.84871 1.01432 1.45631 1.06643 1.08778 1.75266 1.19239 0.82120 0.90974 0.76197 1.91041 1.59376 1.44357 1.50231 1.23054 0.96399 0.95342 1.09744 1.22599 0.92559 0.97289 0.89036 1.18923 0.96416 0.98910 1.01867 1.20686 0.94875 0.90576 0.94388 1.20195 0.94848 1.02442 1.06865 1.20020 0.90839 0.87881 0.93819 1.83876 1.33623 1.41131 1.55293 1.21899 0.99419 1.07775 1.20007 0.87952 1.26727 1.03247 0.93694 0.98741 1.70190 1.40261 1.10244 1.35317 0.84527 0.75064 0.78349 0.77837 1.18296 1.19547 1.17666 1.21101 1.03343 0.98568 1.04826 1.21205 0.92299 0.95807 0.97222 0.90818 0.88578 0.90911 0.91741 0.91816 0.93152 0.89166 0.88286 0.93305 0.93571 0.74065 0.80037 0.81039 0.86252 0.88448 0.91786 0.86212 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 10.29 71.98 0.74 -0.38 16 2 C 0.05 0.75 6.19 71.98 0.45 1.19 16 3 O -0.35 -5.87 10.12 -51.45 -0.52 -6.39 16 4 C 0.47 9.62 7.26 71.24 0.52 10.14 16 5 O -0.55 -16.55 15.67 21.98 0.34 -16.21 16 6 C -0.08 -1.08 2.86 -11.54 -0.03 -1.12 16 7 H 0.15 1.04 8.14 -2.38 -0.02 1.02 16 8 C -0.14 -1.13 9.00 71.98 0.65 -0.48 16 9 C 0.14 3.08 4.41 86.38 0.38 3.46 16 10 N -0.71 -12.17 5.28 -467.50 -2.47 -14.64 16 11 C 0.52 13.49 6.77 86.32 0.58 14.08 16 12 O -0.57 -22.42 12.18 -4.44 -0.05 -22.48 16 13 C -0.23 -3.99 9.90 23.61 0.23 -3.75 16 14 C 0.00 0.10 9.80 23.82 0.23 0.33 16 15 C -0.16 -5.61 4.54 -20.13 -0.09 -5.70 16 16 C 0.01 0.53 6.59 22.55 0.15 0.68 16 17 C -0.22 -11.38 9.97 22.34 0.22 -11.16 16 18 C 0.13 7.04 6.66 22.72 0.15 7.19 16 19 O -0.23 -15.36 9.74 -20.29 -0.20 -15.56 16 20 C -0.42 -25.94 9.48 67.93 0.64 -25.30 16 21 H 0.10 5.87 5.18 -2.91 -0.02 5.85 16 22 C -0.03 -1.63 5.49 84.86 0.47 -1.16 16 23 N -0.92 -59.91 13.67 21.62 0.30 -59.62 16 24 Si 1.02 45.29 29.55 68.60 2.03 47.31 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 28 C -0.26 -12.52 9.14 22.34 0.20 -12.31 16 29 C -0.05 -1.79 9.78 22.55 0.22 -1.57 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 34 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 35 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.49 8.11 -2.39 -0.02 0.47 16 37 H 0.10 0.33 7.18 -2.39 -0.02 0.32 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.05 1.34 7.96 -2.39 -0.02 1.32 16 40 H 0.42 2.99 7.63 -92.71 -0.71 2.28 16 41 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.12 4.34 7.02 -2.91 -0.02 4.32 16 44 H 0.10 5.05 8.06 -2.91 -0.02 5.02 16 45 H 0.27 16.17 8.31 -92.70 -0.77 15.40 16 46 H 0.12 5.77 5.62 -2.91 -0.02 5.75 16 47 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -94.60 400.06 5.43 -89.17 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.29 Total: 24.29 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 5.72 Total: -25.88 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -2.17 Total: -74.25 kcal Atomic # 8 Polarization: -60.21 SS G_CDS: -0.43 Total: -60.64 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -94.60 5.43 -89.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255598626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.775 kcal (2) G-P(sol) polarization free energy of solvation -94.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds