Wall clock time and date at job start Wed Apr 1 2020 05:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35950 * 116.99970 * 2 1 4 4 C 1.38076 * 120.00237 * 359.97430 * 3 2 1 5 5 C 1.39975 * 119.83937 * 180.02562 * 4 3 2 6 6 C 1.46960 * 120.07932 * 180.02562 * 5 4 3 7 7 C 1.35024 * 120.00056 * 136.97931 * 6 5 4 8 8 C 1.46254 * 120.00293 * 346.48647 * 7 6 5 9 9 O 1.21720 * 119.99462 * 353.51857 * 8 7 6 10 10 N 1.34775 * 120.00445 * 173.51763 * 8 7 6 11 11 C 1.46499 * 120.00009 * 180.02562 * 10 8 7 12 12 C 1.53183 * 109.54099 * 274.55355 * 11 10 8 13 13 C 1.53092 * 109.16056 * 183.15498 * 12 11 10 14 14 O 1.42900 * 109.41548 * 57.60869 * 13 12 11 15 15 C 1.42905 * 114.09911 * 298.84017 * 14 13 12 16 16 C 1.53094 * 109.41299 * 61.15901 * 15 14 13 17 17 C 1.40028 * 119.84518 * 0.02562 * 5 4 3 18 18 C 1.37655 * 119.99687 * 0.02562 * 17 5 4 19 19 C 1.39053 * 120.16417 * 359.97438 * 18 17 5 20 20 O 1.35614 * 119.92292 * 180.02562 * 19 18 17 21 21 C 1.34759 * 116.99568 * 355.09141 * 20 19 18 22 22 H 1.07997 * 120.00640 * 5.04802 * 21 20 19 23 23 C 1.38711 * 119.99495 * 185.03798 * 21 20 19 24 24 N 1.31518 * 120.00237 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99851 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47107 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47045 * 120.00071 * 25 23 21 28 28 H 1.48495 * 109.47041 * 240.00436 * 25 23 21 29 29 H 1.08996 * 109.47702 * 300.00134 * 1 2 3 30 30 H 1.09001 * 109.46692 * 60.00705 * 1 2 3 31 31 H 1.09001 * 109.47306 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.07858 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.00093 * 316.98641 * 6 5 4 34 34 H 1.08000 * 120.00136 * 166.47846 * 7 6 5 35 35 H 0.96996 * 120.00040 * 359.97438 * 10 8 7 36 36 H 1.08993 * 109.54354 * 34.82197 * 11 10 8 37 37 H 1.09002 * 109.52268 * 303.05730 * 12 11 10 38 38 H 1.08996 * 109.51930 * 63.25161 * 12 11 10 39 39 H 1.09000 * 109.47977 * 297.62466 * 13 12 11 40 40 H 1.09001 * 109.48220 * 177.59480 * 13 12 11 41 41 H 1.08997 * 109.47934 * 301.17346 * 15 14 13 42 42 H 1.09000 * 109.48717 * 181.14602 * 15 14 13 43 43 H 1.08999 * 109.51825 * 182.48383 * 16 15 14 44 44 H 1.09003 * 109.52002 * 62.29592 * 16 15 14 45 45 H 1.07996 * 120.00361 * 180.29718 * 17 5 4 46 46 H 1.08005 * 119.91712 * 180.02562 * 18 17 5 47 47 H 0.97000 * 120.00166 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 -0.0005 5 6 1.9332 3.6147 -0.0011 6 6 1.1380 4.8506 -0.0011 7 6 1.4919 5.8812 0.7963 8 6 2.4697 5.6769 1.8646 9 8 2.8759 4.5564 2.1117 10 7 2.9210 6.7293 2.5754 11 6 3.9009 6.5247 3.6451 12 6 3.1737 6.1607 4.9433 13 6 4.1986 6.0262 6.0726 14 8 4.9259 7.2495 6.2022 15 6 5.6638 7.6161 5.0346 16 6 4.6977 7.8145 3.8636 17 6 3.3319 3.6803 -0.0016 18 6 4.0752 2.5216 -0.0021 19 6 3.4405 1.2844 -0.0016 20 8 4.1775 0.1460 -0.0016 21 6 5.5142 0.2827 -0.1049 22 1 5.9584 1.2671 -0.1007 23 6 6.3196 -0.8411 -0.2164 24 7 5.7788 -2.0399 -0.2219 25 14 8.1726 -0.6518 -0.3589 26 1 8.5266 0.7901 -0.3289 27 1 8.8299 -1.3471 0.7767 28 1 8.6341 -1.2477 -1.6383 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2156 2.3144 -0.0014 33 1 0.2704 4.9346 -0.6388 34 1 1.0531 6.8563 0.6452 35 1 2.5976 7.6223 2.3783 36 1 4.5804 5.7188 3.3679 37 1 2.4583 6.9445 5.1921 38 1 2.6485 5.2145 4.8135 39 1 4.8894 5.2153 5.8418 40 1 3.6826 5.8092 7.0078 41 1 6.3738 6.8260 4.7903 42 1 6.2033 8.5445 5.2220 43 1 5.2624 8.0511 2.9617 44 1 4.0130 8.6317 4.0907 45 1 3.8276 4.6397 0.0028 46 1 5.1540 2.5737 -0.0021 47 1 6.3420 -2.8258 -0.3002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255635940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:10 Heat of formation + Delta-G solvation = -90.040242 kcal Electronic energy + Delta-G solvation = -30619.897703 eV Core-core repulsion = 26349.020639 eV Total energy + Delta-G solvation = -4270.877064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.21598 -39.51554 -38.76987 -37.45582 -36.31292 -35.02654 -32.96216 -32.18014 -31.52926 -31.34281 -29.45599 -28.47271 -26.47585 -25.48290 -24.93949 -23.84015 -22.89864 -21.48316 -21.03210 -20.61451 -19.19355 -17.98643 -17.75205 -16.84890 -16.56137 -16.22537 -16.07360 -15.47171 -15.18781 -15.07475 -15.03831 -14.60861 -14.47068 -14.11811 -13.95571 -13.82063 -13.48857 -13.37823 -13.30888 -13.15757 -12.64326 -12.57083 -12.26865 -11.76418 -11.66805 -11.57466 -11.43551 -11.34963 -11.14499 -11.02575 -10.92294 -10.66866 -10.57797 -10.45822 -10.32638 -9.96672 -9.49355 -9.32155 -9.13086 -8.96666 -8.66517 -7.72570 -6.64974 -6.43429 -3.95785 1.18087 2.33711 2.66064 3.14486 3.15073 3.20813 3.24911 3.60875 3.65088 3.97433 4.11842 4.43146 4.61391 4.63307 4.70608 4.90327 4.99133 5.02090 5.11220 5.14334 5.21471 5.23374 5.32107 5.43561 5.49333 5.53774 5.58132 5.59509 5.62718 5.74006 5.75385 5.84366 5.87365 5.91614 6.03123 6.22139 6.31182 6.45324 6.52168 6.57999 6.71878 6.94174 7.03259 7.16979 7.29095 7.45322 7.66257 7.70901 7.98541 8.27986 8.53576 9.00895 9.73659 10.73681 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008439 B = 0.003348 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.002620 B = 8362.080974 C =10571.002619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.040 3.960 4 C -0.135 4.135 5 C -0.157 4.157 6 C 0.026 3.974 7 C -0.265 4.265 8 C 0.539 3.461 9 O -0.510 6.510 10 N -0.732 5.732 11 C 0.145 3.855 12 C -0.165 4.165 13 C 0.062 3.938 14 O -0.385 6.385 15 C 0.064 3.936 16 C -0.162 4.162 17 C -0.010 4.010 18 C -0.223 4.223 19 C 0.153 3.847 20 O -0.157 6.157 21 C -0.388 4.388 22 H 0.094 0.906 23 C 0.040 3.960 24 N -0.853 5.853 25 Si 0.941 3.059 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.395 0.605 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.131 0.869 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 19.557 5.389 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.005 4.005 4 C -0.155 4.155 5 C -0.158 4.158 6 C 0.006 3.994 7 C -0.286 4.286 8 C 0.329 3.671 9 O -0.386 6.386 10 N -0.385 5.385 11 C 0.040 3.960 12 C -0.204 4.204 13 C -0.015 4.015 14 O -0.303 6.303 15 C -0.014 4.014 16 C -0.200 4.200 17 C -0.029 4.029 18 C -0.242 4.242 19 C 0.097 3.903 20 O -0.060 6.060 21 C -0.464 4.464 22 H 0.111 0.889 23 C -0.166 4.166 24 N -0.487 5.487 25 Si 0.766 3.234 26 H -0.190 1.190 27 H -0.201 1.201 28 H -0.201 1.201 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.228 0.772 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.117 0.883 46 H 0.149 0.851 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.289 18.129 5.734 20.027 hybrid contribution 0.359 0.727 -0.372 0.892 sum -5.930 18.856 5.362 20.481 Atomic orbital electron populations 1.22849 0.80670 1.02729 1.00085 1.86221 1.19153 1.26480 1.90067 1.17939 0.89344 0.84359 1.08831 1.20679 0.97979 0.90978 1.05827 1.18016 0.92828 0.91224 1.13713 1.22293 0.93892 0.91471 0.91749 1.22608 1.05624 0.99964 1.00435 1.18504 0.81459 0.84546 0.82572 1.91004 1.56860 1.22524 1.68213 1.46033 1.45655 1.10207 1.36569 1.20870 0.90509 0.97877 0.86706 1.22597 0.99272 1.03384 0.95133 1.22591 0.93512 0.86407 0.98992 1.87919 1.64645 1.41305 1.36475 1.22533 0.92988 1.00979 0.84862 1.22485 0.99659 0.97925 0.99957 1.20498 0.91959 0.96480 0.93974 1.20721 1.00299 0.90880 1.12337 1.18813 0.88231 0.87539 0.95677 1.83990 1.19391 1.25688 1.76887 1.21479 0.78527 0.94875 1.51548 0.88866 1.25331 1.00495 0.94218 0.96522 1.70062 1.36106 0.97673 1.44838 0.85644 0.80594 0.78884 0.78298 1.19029 1.20081 1.20077 0.93766 0.93732 0.89236 0.86544 0.86094 0.86133 0.77194 0.89130 0.91156 0.90034 0.92595 0.88622 0.92673 0.88542 0.90195 0.90665 0.88306 0.85145 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.30 -6.99 10.28 -34.20 -0.35 -7.34 16 3 C 0.04 0.93 6.70 -39.12 -0.26 0.67 16 4 C -0.14 -2.62 8.77 -38.99 -0.34 -2.96 16 5 C -0.16 -2.89 4.50 -105.04 -0.47 -3.36 16 6 C 0.03 0.35 9.80 -37.19 -0.36 -0.01 16 7 C -0.27 -3.26 9.87 -37.51 -0.37 -3.63 16 8 C 0.54 7.76 6.73 -13.04 -0.09 7.67 16 9 O -0.51 -9.74 12.03 5.17 0.06 -9.68 16 10 N -0.73 -7.86 5.08 -55.07 -0.28 -8.14 16 11 C 0.15 1.58 2.54 -67.75 -0.17 1.41 16 12 C -0.16 -1.78 5.72 -26.59 -0.15 -1.93 16 13 C 0.06 0.63 6.84 37.21 0.25 0.89 16 14 O -0.38 -4.11 10.77 -35.23 -0.38 -4.49 16 15 C 0.06 0.54 6.84 37.21 0.25 0.80 16 16 C -0.16 -1.31 5.61 -26.59 -0.15 -1.46 16 17 C -0.01 -0.21 6.69 -39.12 -0.26 -0.47 16 18 C -0.22 -5.20 9.14 -39.49 -0.36 -5.57 16 19 C 0.15 3.98 6.67 -38.76 -0.26 3.72 16 20 O -0.16 -4.75 9.52 -13.94 -0.13 -4.88 16 21 C -0.39 -11.20 9.48 30.91 0.29 -10.91 16 22 H 0.09 2.49 5.18 -52.49 -0.27 2.22 16 23 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 24 N -0.85 -25.59 13.67 55.48 0.76 -24.83 16 25 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 28 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 29 H 0.04 0.63 7.66 -51.93 -0.40 0.24 16 30 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.12 1.87 6.28 -52.49 -0.33 1.54 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.39 3.03 8.58 -40.82 -0.35 2.68 16 36 H 0.09 1.24 7.57 -51.93 -0.39 0.84 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.10 1.82 7.07 -52.49 -0.37 1.45 16 46 H 0.13 3.03 5.61 -52.48 -0.29 2.74 16 47 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -35.72 386.75 -7.67 -43.39 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.59 Total: 6.95 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -1.56 Total: -12.63 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.48 Total: -32.97 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.80 Total: -26.39 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.72 -7.67 -43.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255635940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.651 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds