Wall clock time and date at job start Wed Apr 1 2020 05:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35950 * 116.99970 * 2 1 4 4 C 1.38076 * 120.00237 * 359.97430 * 3 2 1 5 5 C 1.39975 * 119.83937 * 180.02562 * 4 3 2 6 6 C 1.46960 * 120.07932 * 180.02562 * 5 4 3 7 7 C 1.35024 * 120.00056 * 136.97931 * 6 5 4 8 8 C 1.46254 * 120.00293 * 346.48647 * 7 6 5 9 9 O 1.21720 * 119.99462 * 353.51857 * 8 7 6 10 10 N 1.34775 * 120.00445 * 173.51763 * 8 7 6 11 11 C 1.46499 * 120.00009 * 180.02562 * 10 8 7 12 12 C 1.53183 * 109.54099 * 274.55355 * 11 10 8 13 13 C 1.53092 * 109.16056 * 183.15498 * 12 11 10 14 14 O 1.42900 * 109.41548 * 57.60869 * 13 12 11 15 15 C 1.42905 * 114.09911 * 298.84017 * 14 13 12 16 16 C 1.53094 * 109.41299 * 61.15901 * 15 14 13 17 17 C 1.40028 * 119.84518 * 0.02562 * 5 4 3 18 18 C 1.37655 * 119.99687 * 0.02562 * 17 5 4 19 19 C 1.39053 * 120.16417 * 359.97438 * 18 17 5 20 20 O 1.35614 * 119.92292 * 180.02562 * 19 18 17 21 21 C 1.34759 * 116.99568 * 355.09141 * 20 19 18 22 22 H 1.07997 * 120.00640 * 5.04802 * 21 20 19 23 23 C 1.38711 * 119.99495 * 185.03798 * 21 20 19 24 24 N 1.31518 * 120.00237 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99851 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47107 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47045 * 120.00071 * 25 23 21 28 28 H 1.48495 * 109.47041 * 240.00436 * 25 23 21 29 29 H 1.08996 * 109.47702 * 300.00134 * 1 2 3 30 30 H 1.09001 * 109.46692 * 60.00705 * 1 2 3 31 31 H 1.09001 * 109.47306 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.07858 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.00093 * 316.98641 * 6 5 4 34 34 H 1.08000 * 120.00136 * 166.47846 * 7 6 5 35 35 H 0.96996 * 120.00040 * 359.97438 * 10 8 7 36 36 H 1.08993 * 109.54354 * 34.82197 * 11 10 8 37 37 H 1.09002 * 109.52268 * 303.05730 * 12 11 10 38 38 H 1.08996 * 109.51930 * 63.25161 * 12 11 10 39 39 H 1.09000 * 109.47977 * 297.62466 * 13 12 11 40 40 H 1.09001 * 109.48220 * 177.59480 * 13 12 11 41 41 H 1.08997 * 109.47934 * 301.17346 * 15 14 13 42 42 H 1.09000 * 109.48717 * 181.14602 * 15 14 13 43 43 H 1.08999 * 109.51825 * 182.48383 * 16 15 14 44 44 H 1.09003 * 109.52002 * 62.29592 * 16 15 14 45 45 H 1.07996 * 120.00361 * 180.29718 * 17 5 4 46 46 H 1.08005 * 119.91712 * 180.02562 * 18 17 5 47 47 H 0.97000 * 120.00166 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 -0.0005 5 6 1.9332 3.6147 -0.0011 6 6 1.1380 4.8506 -0.0011 7 6 1.4919 5.8812 0.7963 8 6 2.4697 5.6769 1.8646 9 8 2.8759 4.5564 2.1117 10 7 2.9210 6.7293 2.5754 11 6 3.9009 6.5247 3.6451 12 6 3.1737 6.1607 4.9433 13 6 4.1986 6.0262 6.0726 14 8 4.9259 7.2495 6.2022 15 6 5.6638 7.6161 5.0346 16 6 4.6977 7.8145 3.8636 17 6 3.3319 3.6803 -0.0016 18 6 4.0752 2.5216 -0.0021 19 6 3.4405 1.2844 -0.0016 20 8 4.1775 0.1460 -0.0016 21 6 5.5142 0.2827 -0.1049 22 1 5.9584 1.2671 -0.1007 23 6 6.3196 -0.8411 -0.2164 24 7 5.7788 -2.0399 -0.2219 25 14 8.1726 -0.6518 -0.3589 26 1 8.5266 0.7901 -0.3289 27 1 8.8299 -1.3471 0.7767 28 1 8.6341 -1.2477 -1.6383 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2156 2.3144 -0.0014 33 1 0.2704 4.9346 -0.6388 34 1 1.0531 6.8563 0.6452 35 1 2.5976 7.6223 2.3783 36 1 4.5804 5.7188 3.3679 37 1 2.4583 6.9445 5.1921 38 1 2.6485 5.2145 4.8135 39 1 4.8894 5.2153 5.8418 40 1 3.6826 5.8092 7.0078 41 1 6.3738 6.8260 4.7903 42 1 6.2033 8.5445 5.2220 43 1 5.2624 8.0511 2.9617 44 1 4.0130 8.6317 4.0907 45 1 3.8276 4.6397 0.0028 46 1 5.1540 2.5737 -0.0021 47 1 6.3420 -2.8258 -0.3002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255635940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:09 Heat of formation + Delta-G solvation = -116.551922 kcal Electronic energy + Delta-G solvation = -30621.047335 eV Core-core repulsion = 26349.020639 eV Total energy + Delta-G solvation = -4272.026696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.43612 -40.94888 -39.84941 -39.23995 -37.81125 -36.13666 -34.53977 -33.90331 -32.55249 -32.12170 -31.12412 -29.97651 -27.85584 -27.36578 -26.07993 -24.62693 -24.14671 -23.20483 -22.39224 -21.51741 -20.38644 -19.87967 -19.32390 -18.08178 -17.79795 -17.43835 -17.01870 -16.89939 -16.62208 -16.47850 -16.28930 -15.97362 -15.66488 -15.37156 -15.33994 -15.19101 -14.99233 -14.89687 -14.49861 -14.29292 -13.92082 -13.90230 -13.47789 -13.35905 -13.07873 -12.82665 -12.74915 -12.55583 -12.54489 -12.35135 -12.15618 -12.03561 -11.95152 -11.82389 -11.43960 -11.35916 -10.93020 -10.84693 -10.52681 -10.24873 -10.00772 -9.35815 -8.47360 -8.36608 -6.11089 -0.06642 0.64384 1.09267 1.31404 1.42482 1.50891 2.16336 2.30083 2.47477 2.61464 2.84919 2.89783 3.17696 3.43621 3.65177 3.78375 3.89771 3.96665 4.03208 4.08097 4.12779 4.23020 4.24646 4.34074 4.43238 4.44786 4.53064 4.57248 4.62451 4.69623 4.70359 4.74431 4.76102 4.81954 4.98658 5.00376 5.03356 5.09392 5.14508 5.16979 5.37455 5.50980 5.57084 5.59302 5.81771 5.96261 6.06535 6.16904 6.68106 6.73293 6.96609 7.46868 7.80863 8.76650 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008439 B = 0.003348 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.002620 B = 8362.080974 C =10571.002619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.348 6.348 3 C 0.027 3.973 4 C -0.136 4.136 5 C -0.120 4.120 6 C 0.000 4.000 7 C -0.224 4.224 8 C 0.525 3.475 9 O -0.566 6.566 10 N -0.711 5.711 11 C 0.142 3.858 12 C -0.157 4.157 13 C 0.063 3.937 14 O -0.395 6.395 15 C 0.056 3.944 16 C -0.150 4.150 17 C -0.022 4.022 18 C -0.225 4.225 19 C 0.096 3.904 20 O -0.220 6.220 21 C -0.415 4.415 22 H 0.098 0.902 23 C -0.023 4.023 24 N -0.918 5.918 25 Si 1.020 2.980 26 H -0.253 1.253 27 H -0.267 1.267 28 H -0.264 1.264 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.159 0.841 33 H 0.171 0.829 34 H 0.177 0.823 35 H 0.416 0.584 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.108 0.892 41 H 0.047 0.953 42 H 0.121 0.879 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.894 25.014 5.370 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.263 6.263 3 C -0.017 4.017 4 C -0.154 4.154 5 C -0.121 4.121 6 C -0.020 4.020 7 C -0.244 4.244 8 C 0.315 3.685 9 O -0.446 6.446 10 N -0.363 5.363 11 C 0.037 3.963 12 C -0.196 4.196 13 C -0.015 4.015 14 O -0.314 6.314 15 C -0.021 4.021 16 C -0.188 4.188 17 C -0.040 4.040 18 C -0.245 4.245 19 C 0.045 3.955 20 O -0.127 6.127 21 C -0.491 4.491 22 H 0.115 0.885 23 C -0.221 4.221 24 N -0.556 5.556 25 Si 0.839 3.161 26 H -0.176 1.176 27 H -0.192 1.192 28 H -0.189 1.189 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.176 0.824 33 H 0.188 0.812 34 H 0.194 0.806 35 H 0.253 0.747 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.126 0.874 41 H 0.065 0.935 42 H 0.139 0.861 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.528 23.712 5.723 25.841 hybrid contribution 0.651 -0.467 -0.228 0.833 sum -7.877 23.246 5.495 25.152 Atomic orbital electron populations 1.23238 0.77226 1.04789 1.01974 1.86164 1.22918 1.27056 1.90208 1.18315 0.88881 0.85916 1.08621 1.21162 0.99857 0.89863 1.04567 1.18668 0.92615 0.93350 1.07439 1.22560 0.95518 0.89198 0.94679 1.23110 1.02330 1.01540 0.97467 1.19139 0.81655 0.84345 0.83330 1.91022 1.58924 1.24937 1.69725 1.45864 1.44492 1.10553 1.35401 1.20874 0.90324 0.98540 0.86603 1.22497 0.99412 1.02401 0.95329 1.22579 0.93258 0.86190 0.99427 1.87909 1.64798 1.41049 1.37622 1.22747 0.92983 1.01844 0.84495 1.22416 0.99547 0.96527 1.00291 1.20681 0.93101 0.95779 0.94438 1.20811 1.00064 0.91564 1.12019 1.19452 0.89801 0.87657 0.98599 1.83955 1.19815 1.27699 1.81191 1.21898 0.79127 0.95542 1.52533 0.88510 1.26640 1.06092 0.93467 0.95856 1.70212 1.38259 0.98710 1.48374 0.84526 0.73291 0.79520 0.78769 1.17629 1.19166 1.18855 0.92047 0.91259 0.87427 0.82368 0.81189 0.80606 0.74703 0.92679 0.89611 0.92737 0.93941 0.87391 0.93492 0.86090 0.88955 0.88681 0.86550 0.86579 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.79 16 2 O -0.35 -16.71 10.28 -79.02 -0.81 -17.52 16 3 C 0.03 1.33 6.70 22.57 0.15 1.48 16 4 C -0.14 -5.05 8.77 22.65 0.20 -4.85 16 5 C -0.12 -4.12 4.50 -20.14 -0.09 -4.21 16 6 C 0.00 -0.01 9.80 23.82 0.23 0.23 16 7 C -0.22 -4.10 9.87 23.61 0.23 -3.87 16 8 C 0.52 13.31 6.73 86.33 0.58 13.90 16 9 O -0.57 -21.17 12.03 -4.41 -0.05 -21.22 16 10 N -0.71 -12.63 5.08 -446.35 -2.27 -14.90 16 11 C 0.14 2.84 2.54 45.11 0.11 2.96 16 12 C -0.16 -3.21 5.72 30.69 0.18 -3.03 16 13 C 0.06 1.24 6.84 72.01 0.49 1.73 16 14 O -0.39 -7.76 10.77 -148.98 -1.60 -9.37 16 15 C 0.06 0.84 6.84 72.01 0.49 1.33 16 16 C -0.15 -1.95 5.61 30.68 0.17 -1.78 16 17 C -0.02 -0.87 6.69 22.57 0.15 -0.71 16 18 C -0.23 -11.21 9.14 22.33 0.20 -11.00 16 19 C 0.10 5.39 6.67 22.80 0.15 5.54 16 20 O -0.22 -14.63 9.52 -6.55 -0.06 -14.69 16 21 C -0.41 -26.19 9.48 67.93 0.64 -25.55 16 22 H 0.10 5.68 5.18 -2.91 -0.02 5.67 16 23 C -0.02 -1.40 5.49 84.85 0.47 -0.93 16 24 N -0.92 -59.65 13.67 21.62 0.30 -59.35 16 25 Si 1.02 45.45 29.55 68.60 2.03 47.47 16 26 H -0.25 -10.47 7.11 99.48 0.71 -9.77 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 28 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 29 H 0.06 1.65 7.66 -2.39 -0.02 1.63 16 30 H 0.07 1.76 7.66 -2.39 -0.02 1.75 16 31 H 0.11 2.85 8.14 -2.39 -0.02 2.84 16 32 H 0.16 4.45 6.28 -2.91 -0.02 4.43 16 33 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 34 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.42 4.06 8.58 -92.71 -0.80 3.26 16 36 H 0.05 1.53 7.57 -2.39 -0.02 1.51 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.12 4.17 7.07 -2.91 -0.02 4.15 16 46 H 0.12 5.91 5.61 -2.91 -0.02 5.89 16 47 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -91.03 386.75 3.22 -87.81 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.21 Total: 28.75 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 5.48 Total: -26.98 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -1.97 Total: -74.25 kcal Atomic # 8 Polarization: -60.27 SS G_CDS: -2.53 Total: -62.80 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -91.03 3.22 -87.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255635940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.737 kcal (2) G-P(sol) polarization free energy of solvation -91.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds