Wall clock time and date at job start Wed Apr 1 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99586 * 2 1 4 4 C 1.52998 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.78115 * 46.28164 * 4 3 2 6 6 C 1.53758 * 113.55367 * 177.13552 * 4 3 2 7 7 C 1.53495 * 83.25872 * 140.98738 * 6 4 3 8 8 N 1.47068 * 113.46885 * 275.50031 * 4 3 2 9 9 C 1.34774 * 136.06066 * 38.13145 * 8 4 3 10 10 O 1.21724 * 119.99837 * 359.63117 * 9 8 4 11 11 C 1.46251 * 120.00076 * 179.63321 * 9 8 4 12 12 C 1.35024 * 119.99967 * 180.02562 * 11 9 8 13 13 C 1.46965 * 120.00331 * 179.97438 * 12 11 9 14 14 C 1.40028 * 120.07623 * 0.02562 * 13 12 11 15 15 C 1.37644 * 120.00104 * 180.02562 * 14 13 12 16 16 C 1.39065 * 120.16128 * 0.02562 * 15 14 13 17 17 O 1.35610 * 119.91969 * 179.97438 * 16 15 14 18 18 C 1.34760 * 117.00350 * 354.37969 * 17 16 15 19 19 H 1.08002 * 120.00189 * 5.06272 * 18 17 16 20 20 C 1.38707 * 120.00315 * 185.06845 * 18 17 16 21 21 N 1.31517 * 119.99999 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99822 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47234 * 90.00405 * 22 20 18 24 24 H 1.48501 * 109.46978 * 210.00588 * 22 20 18 25 25 H 1.48498 * 109.47226 * 330.00003 * 22 20 18 26 26 C 1.39616 * 120.15565 * 0.02562 * 16 15 14 27 27 O 1.35957 * 119.99643 * 179.97438 * 26 16 15 28 28 C 1.42904 * 116.99758 * 180.02562 * 27 26 16 29 29 C 1.38076 * 119.99807 * 0.23213 * 26 16 15 30 30 H 1.09001 * 109.46928 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47026 * 299.99416 * 1 2 3 32 32 H 1.09002 * 109.47417 * 59.99609 * 1 2 3 33 33 H 1.09004 * 109.46947 * 60.00351 * 3 2 1 34 34 H 1.09000 * 109.47339 * 300.00249 * 3 2 1 35 35 H 1.09001 * 114.38874 * 27.42479 * 6 4 3 36 36 H 1.08999 * 114.26939 * 254.54712 * 6 4 3 37 37 H 1.09003 * 113.46993 * 218.98373 * 7 6 4 38 38 H 1.08997 * 113.46275 * 88.54248 * 7 6 4 39 39 H 1.07995 * 120.00365 * 359.97438 * 11 9 8 40 40 H 1.08006 * 120.00187 * 359.97438 * 12 11 9 41 41 H 1.08006 * 119.99893 * 0.02562 * 14 13 12 42 42 H 1.08006 * 119.91962 * 179.97438 * 15 14 13 43 43 H 0.97007 * 120.00084 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.47214 * 180.02562 * 28 27 26 45 45 H 1.09006 * 109.46894 * 300.00471 * 28 27 26 46 46 H 1.09000 * 109.47250 * 60.00204 * 28 27 26 47 47 H 1.07999 * 120.07781 * 179.72913 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.9010 0.4592 -0.7272 6 6 4.2590 2.5396 -0.0711 7 6 5.2234 1.8715 0.9186 8 7 4.1096 1.0094 1.3419 9 6 3.7683 0.3459 2.4643 10 8 2.7407 -0.3057 2.4974 11 6 4.6327 0.4087 3.6423 12 6 4.2911 -0.2564 4.7666 13 6 5.1599 -0.1937 5.9503 14 6 6.3421 0.5558 5.9141 15 6 7.1550 0.6129 7.0235 16 6 6.8056 -0.0727 8.1818 17 8 7.6103 -0.0134 9.2717 18 6 8.7865 0.6288 9.1297 19 1 9.0158 1.1374 8.2049 20 6 9.7027 0.6365 10.1710 21 7 10.8504 1.2636 10.0325 22 14 9.3059 -0.2428 11.7707 23 1 9.7797 -1.6480 11.6939 24 1 9.9847 0.4478 12.8966 25 1 7.8378 -0.2269 11.9933 26 6 5.6289 -0.8229 8.2248 27 8 5.2907 -1.4924 9.3587 28 6 4.0733 -2.2404 9.3319 29 6 4.8114 -0.8891 7.1140 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6885 1.8464 0.8901 34 1 1.6885 1.8465 -0.8899 35 1 3.6953 3.3732 0.3477 36 1 4.6992 2.7623 -1.0430 37 1 5.5750 2.5426 1.7023 38 1 6.0339 1.3269 0.4343 39 1 5.5446 0.9865 3.6128 40 1 3.3793 -0.8346 4.7961 41 1 6.6162 1.0890 5.0158 42 1 8.0668 1.1911 6.9940 43 1 11.4910 1.2693 10.7609 44 1 3.9227 -2.7241 10.2969 45 1 3.2389 -1.5691 9.1280 46 1 4.1294 -2.9979 8.5502 47 1 3.9031 -1.4726 7.1445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293908781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:10 Heat of formation + Delta-G solvation = -50.858899 kcal Electronic energy + Delta-G solvation = -29402.399155 eV Core-core repulsion = 25133.221122 eV Total energy + Delta-G solvation = -4269.178033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.61465 -39.85970 -38.07115 -37.85203 -37.41492 -36.59907 -33.04515 -32.40676 -30.57953 -29.81254 -29.24168 -28.64521 -26.68711 -26.28925 -25.48823 -23.79630 -23.21449 -22.15404 -21.57946 -19.98180 -18.61344 -18.12254 -17.92210 -17.11170 -16.62949 -16.56945 -16.21496 -15.90120 -15.57925 -15.35850 -15.15004 -14.61970 -14.41255 -14.10290 -13.95625 -13.90282 -13.79451 -13.54595 -13.22427 -12.85240 -12.64555 -12.47529 -12.33581 -12.23284 -11.96425 -11.91392 -11.81432 -11.58978 -11.39105 -11.09776 -10.98666 -10.97997 -10.88434 -10.71533 -10.29652 -9.83647 -9.64252 -9.56510 -9.44215 -8.90875 -8.75444 -8.07886 -7.04496 -6.57751 -4.17676 0.97225 2.00687 2.46972 2.75038 3.17246 3.21794 3.39186 3.47555 3.62242 3.78807 4.05608 4.15713 4.38435 4.47639 4.58116 4.68525 4.77984 4.91681 4.96063 5.00710 5.02052 5.15164 5.17838 5.21698 5.24395 5.28383 5.37176 5.37594 5.42765 5.45210 5.51248 5.52230 5.65272 5.70532 5.76111 5.87595 5.93400 6.07744 6.36076 6.41945 6.53857 6.79511 6.91862 7.00877 7.16526 7.32367 7.50272 7.74236 7.79136 7.98799 8.36182 8.76038 9.38080 10.48027 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.002102 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.945330 B =13315.673278 C =14843.024701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.374 6.374 3 C 0.062 3.938 4 C 0.136 3.864 5 H 0.098 0.902 6 C -0.148 4.148 7 C 0.100 3.900 8 N -0.645 5.645 9 C 0.579 3.421 10 O -0.535 6.535 11 C -0.261 4.261 12 C 0.026 3.974 13 C -0.153 4.153 14 C -0.064 4.064 15 C -0.209 4.209 16 C 0.155 3.845 17 O -0.190 6.190 18 C -0.388 4.388 19 H 0.111 0.889 20 C 0.067 3.933 21 N -0.866 5.866 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.254 1.254 26 C 0.052 3.948 27 O -0.309 6.309 28 C 0.029 3.971 29 C -0.137 4.137 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.144 0.856 43 H 0.283 0.717 44 H 0.092 0.908 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.404 1.439 -18.009 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.292 6.292 3 C -0.016 4.016 4 C 0.032 3.968 5 H 0.115 0.885 6 C -0.186 4.186 7 C -0.023 4.023 8 N -0.382 5.382 9 C 0.374 3.626 10 O -0.414 6.414 11 C -0.281 4.281 12 C 0.006 3.994 13 C -0.154 4.154 14 C -0.083 4.083 15 C -0.228 4.228 16 C 0.100 3.900 17 O -0.093 6.093 18 C -0.463 4.463 19 H 0.128 0.872 20 C -0.139 4.139 21 N -0.502 5.502 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.178 1.178 26 C 0.007 3.993 27 O -0.223 6.223 28 C -0.066 4.066 29 C -0.156 4.156 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.161 0.839 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.572 0.775 -17.216 22.568 hybrid contribution -0.238 -0.090 0.419 0.490 sum -14.810 0.684 -16.797 22.404 Atomic orbital electron populations 1.22657 0.81384 1.02595 0.99339 1.87990 1.19301 1.26688 1.95198 1.22680 0.92800 0.85872 1.00229 1.22701 0.92791 0.96224 0.85093 0.88453 1.23528 0.98136 0.96176 1.00764 1.22899 0.91208 0.91588 0.96652 1.49668 1.25777 1.51435 1.11317 1.17960 0.85614 0.77224 0.81797 1.90831 1.26232 1.41043 1.83265 1.22469 1.02645 1.09296 0.93733 1.22216 0.95688 0.91118 0.90370 1.18242 0.97694 1.05745 0.93736 1.20975 0.92931 0.96928 0.97419 1.20974 1.03289 1.05859 0.92701 1.18613 0.89468 0.94296 0.87633 1.83586 1.28298 1.66563 1.30808 1.20897 0.90044 1.31003 1.04320 0.87209 1.24516 0.93801 0.96272 0.99286 1.69624 1.06730 1.39810 1.34039 0.86164 0.80349 0.79611 0.80900 1.19646 1.20639 1.17779 1.18034 0.95170 0.98969 0.87158 1.86177 1.40423 1.62260 1.33436 1.22936 0.85824 0.94980 1.02892 1.20890 0.99692 1.02680 0.92333 0.89830 0.94252 0.94653 0.92878 0.92618 0.88537 0.88911 0.89900 0.89628 0.85916 0.85878 0.86416 0.83879 0.90683 0.88946 0.93276 0.93236 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 11.01 101.05 1.11 1.47 16 2 O -0.37 -4.81 9.83 -43.71 -0.43 -5.24 16 3 C 0.06 0.62 5.39 37.16 0.20 0.82 16 4 C 0.14 1.25 4.33 -72.26 -0.31 0.93 16 5 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.15 -0.83 8.04 -26.08 -0.21 -1.04 16 7 C 0.10 0.74 8.30 -8.50 -0.07 0.67 16 8 N -0.64 -7.53 3.56 -178.98 -0.64 -8.17 16 9 C 0.58 8.80 7.89 -13.04 -0.10 8.70 16 10 O -0.54 -9.85 15.64 -3.31 -0.05 -9.91 16 11 C -0.26 -3.75 9.25 -37.51 -0.35 -4.09 16 12 C 0.03 0.40 9.45 -37.19 -0.35 0.05 16 13 C -0.15 -2.60 5.87 -105.04 -0.62 -3.21 16 14 C -0.06 -1.12 9.40 -39.13 -0.37 -1.49 16 15 C -0.21 -4.29 9.14 -39.49 -0.36 -4.65 16 16 C 0.15 3.54 6.67 -38.76 -0.26 3.28 16 17 O -0.19 -4.96 8.35 -13.94 -0.12 -5.07 16 18 C -0.39 -10.55 9.94 30.91 0.31 -10.24 16 19 H 0.11 2.99 5.42 -52.49 -0.28 2.70 16 20 C 0.07 1.81 5.49 -17.51 -0.10 1.72 16 21 N -0.87 -24.04 13.96 55.48 0.77 -23.27 16 22 Si 0.90 21.34 28.62 -169.99 -4.86 16.47 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 25 H -0.25 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.05 1.05 6.70 -39.13 -0.26 0.79 16 27 O -0.31 -6.09 10.28 -34.22 -0.35 -6.44 16 28 C 0.03 0.40 9.81 101.05 0.99 1.39 16 29 C -0.14 -2.37 8.77 -38.99 -0.34 -2.71 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.52 8.13 -51.93 -0.42 0.10 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.12 1.57 5.97 -52.49 -0.31 1.25 16 40 H 0.12 1.87 7.52 -52.48 -0.39 1.48 16 41 H 0.12 1.72 6.15 -52.48 -0.32 1.40 16 42 H 0.14 3.00 5.62 -52.48 -0.29 2.71 16 43 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 46 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 47 H 0.13 1.81 6.28 -52.49 -0.33 1.48 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -33.70 397.16 -7.30 -41.00 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.52 Total: 2.28 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.09 Total: -7.64 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.14 Total: -31.44 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.95 Total: -26.66 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.86 Total: 16.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.70 -7.30 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293908781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.861 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds