Wall clock time and date at job start Wed Apr 1 2020 05:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35948 * 117.00079 * 2 1 4 4 C 1.38077 * 120.00437 * 0.24928 * 3 2 1 5 5 C 1.39974 * 119.84180 * 180.22927 * 4 3 2 6 6 C 1.46964 * 120.07949 * 179.76910 * 5 4 3 7 7 C 1.35022 * 119.99787 * 179.72647 * 6 5 4 8 8 C 1.46256 * 119.99744 * 180.02562 * 7 6 5 9 9 O 1.21720 * 120.00242 * 4.96538 * 8 7 6 10 10 N 1.34783 * 119.99716 * 184.97037 * 8 7 6 11 11 C 1.46961 * 120.65652 * 354.44472 * 10 8 7 12 12 C 1.53187 * 108.89028 * 233.53922 * 11 10 8 13 13 C 1.53036 * 109.31549 * 305.44395 * 12 11 10 14 14 C 1.53047 * 109.53592 * 61.36563 * 13 12 11 15 15 H 1.09004 * 109.51986 * 58.60317 * 14 13 12 16 16 O 1.42898 * 109.49499 * 178.68109 * 14 13 12 17 17 C 1.46928 * 120.62656 * 174.63920 * 10 8 7 18 18 C 1.40027 * 119.83905 * 359.50028 * 5 4 3 19 19 C 1.37652 * 120.00358 * 0.26908 * 18 5 4 20 20 C 1.39059 * 120.15818 * 359.97438 * 19 18 5 21 21 O 1.35612 * 119.91772 * 180.02562 * 20 19 18 22 22 C 1.34763 * 116.99962 * 5.32519 * 21 20 19 23 23 H 1.07995 * 120.00213 * 354.96977 * 22 21 20 24 24 C 1.38708 * 119.99474 * 174.97011 * 22 21 20 25 25 N 1.31522 * 119.99797 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00433 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46989 * 90.00279 * 26 24 22 28 28 H 1.48499 * 109.47408 * 210.00073 * 26 24 22 29 29 H 1.48496 * 109.47285 * 330.00269 * 26 24 22 30 30 H 1.08997 * 109.47037 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47010 * 300.00473 * 1 2 3 32 32 H 1.09001 * 109.46746 * 60.00377 * 1 2 3 33 33 H 1.08003 * 120.07644 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.99931 * 359.72661 * 6 5 4 35 35 H 1.08000 * 120.00473 * 0.02562 * 7 6 5 36 36 H 1.08999 * 109.46385 * 113.75287 * 11 10 8 37 37 H 1.09004 * 109.59106 * 353.40492 * 11 10 8 38 38 H 1.08997 * 109.49437 * 185.49033 * 12 11 10 39 39 H 1.09007 * 109.52287 * 65.41481 * 12 11 10 40 40 H 1.08995 * 109.46006 * 301.34615 * 13 12 11 41 41 H 1.09003 * 109.44681 * 181.37710 * 13 12 11 42 42 H 0.96703 * 113.99788 * 179.83873 * 16 14 13 43 43 H 1.09002 * 109.59000 * 6.59836 * 17 10 8 44 44 H 1.08997 * 109.58222 * 246.31603 * 17 10 8 45 45 H 1.07997 * 119.99896 * 180.24744 * 18 5 4 46 46 H 1.07999 * 119.91550 * 179.97438 * 19 18 5 47 47 H 0.97001 * 120.00450 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2944 2.3694 0.0052 5 6 1.9334 3.6147 0.0003 6 6 1.1381 4.8506 0.0007 7 6 1.7563 6.0511 0.0016 8 6 0.9649 7.2810 0.0025 9 8 -0.2476 7.2246 0.0937 10 7 1.5782 8.4770 -0.0977 11 6 3.0448 8.5703 -0.0865 12 6 3.4703 9.5632 0.9997 13 6 2.7573 10.8981 0.7727 14 6 1.2438 10.6933 0.8716 15 1 0.9944 10.2882 1.8523 16 8 0.5802 11.9457 0.6900 17 6 0.7930 9.7133 -0.2161 18 6 3.3321 3.6801 0.0008 19 6 4.0754 2.5215 0.0004 20 6 3.4406 1.2843 0.0001 21 8 4.1776 0.1459 0.0003 22 6 5.5136 0.2821 0.1122 23 1 5.9578 1.2665 0.1147 24 6 6.3183 -0.8421 0.2242 25 7 7.6222 -0.7092 0.3339 26 14 5.5501 -2.5448 0.2207 27 1 5.4681 -3.0479 -1.1741 28 1 6.3859 -3.4667 1.0310 29 1 4.1856 -2.4735 0.8022 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2157 2.3144 0.0097 34 1 0.0594 4.7987 0.0003 35 1 2.8350 6.1031 0.0016 36 1 3.3939 8.9199 -1.0581 37 1 3.4718 7.5903 0.1265 38 1 4.5487 9.7141 0.9523 39 1 3.2008 9.1688 1.9795 40 1 3.0081 11.2801 -0.2169 41 1 3.0771 11.6138 1.5301 42 1 -0.3841 11.8905 0.7378 43 1 -0.2657 9.4875 -0.0885 44 1 0.9562 10.1570 -1.1982 45 1 3.8278 4.6396 0.0011 46 1 5.1541 2.5736 0.0004 47 1 8.1850 -1.4954 0.4119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298116395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:24 Heat of formation + Delta-G solvation = -100.092571 kcal Electronic energy + Delta-G solvation = -29560.594924 eV Core-core repulsion = 25289.281959 eV Total energy + Delta-G solvation = -4271.312965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.40245 -39.88189 -38.22520 -37.89503 -36.73049 -36.08481 -33.19498 -32.71230 -32.46122 -30.50199 -29.85622 -28.83066 -26.86149 -26.02779 -25.27006 -23.68900 -23.04584 -21.89913 -21.23653 -20.16108 -18.65507 -18.25358 -18.01284 -17.65832 -17.18788 -16.53471 -15.91219 -15.69866 -15.46262 -15.39152 -14.99477 -14.73784 -14.58845 -14.21320 -13.99342 -13.86543 -13.83576 -13.51657 -13.32700 -13.15493 -12.95456 -12.58771 -12.39509 -12.23208 -12.05326 -11.97299 -11.67009 -11.44639 -11.34982 -11.07125 -11.02384 -10.92122 -10.87283 -10.77679 -10.58011 -10.32124 -9.84726 -9.63139 -9.51285 -8.95984 -8.79299 -8.12455 -7.09494 -6.61465 -4.21264 0.87724 1.96599 2.38202 2.78121 3.15460 3.18652 3.36544 3.41006 3.75287 3.78726 4.12565 4.33010 4.33734 4.45889 4.52912 4.55084 4.66397 4.77739 4.85203 4.92821 5.00465 5.17226 5.23553 5.27403 5.37941 5.39674 5.41272 5.42218 5.45948 5.52720 5.59356 5.60645 5.68384 5.71868 5.85218 5.89160 6.02546 6.16408 6.31858 6.36565 6.46603 6.72011 6.86307 7.10643 7.20986 7.26506 7.29954 7.46370 7.75308 7.94985 8.15971 8.71981 9.33642 10.44121 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.002132 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.750100 B =13128.646848 C =14687.393749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.157 4.157 6 C 0.034 3.966 7 C -0.275 4.275 8 C 0.559 3.441 9 O -0.558 6.558 10 N -0.612 5.612 11 C 0.103 3.897 12 C -0.134 4.134 13 C -0.113 4.113 14 C 0.092 3.908 15 H 0.059 0.941 16 O -0.565 6.565 17 C 0.082 3.918 18 C -0.062 4.062 19 C -0.210 4.210 20 C 0.155 3.845 21 O -0.188 6.188 22 C -0.388 4.388 23 H 0.111 0.889 24 C 0.067 3.933 25 N -0.865 5.865 26 Si 0.904 3.096 27 H -0.271 1.271 28 H -0.281 1.281 29 H -0.253 1.253 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.381 0.619 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.118 0.882 46 H 0.144 0.856 47 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 17.106 0.067 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.158 4.158 6 C 0.014 3.986 7 C -0.296 4.296 8 C 0.353 3.647 9 O -0.439 6.439 10 N -0.347 5.347 11 C -0.020 4.020 12 C -0.172 4.172 13 C -0.151 4.151 14 C 0.032 3.968 15 H 0.077 0.923 16 O -0.370 6.370 17 C -0.041 4.041 18 C -0.081 4.081 19 C -0.229 4.229 20 C 0.100 3.900 21 O -0.091 6.091 22 C -0.462 4.462 23 H 0.128 0.872 24 C -0.139 4.139 25 N -0.500 5.500 26 Si 0.729 3.271 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.177 1.177 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.228 0.772 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.136 0.864 46 H 0.162 0.838 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.439 16.726 0.064 19.716 hybrid contribution -0.741 -0.636 0.032 0.977 sum -11.180 16.090 0.096 19.593 Atomic orbital electron populations 1.22937 0.79868 1.03159 1.00668 1.86179 1.19881 1.26350 1.89863 1.18035 0.89266 0.84653 1.07368 1.20891 0.98720 0.90839 1.05055 1.18229 0.92834 0.91447 1.13315 1.22257 0.99187 0.90927 0.86217 1.22586 1.00010 0.91514 1.15494 1.18421 0.87404 0.83707 0.75127 1.90761 1.14540 1.87199 1.51356 1.47841 1.06833 1.05814 1.74172 1.21892 0.79569 1.01295 0.99237 1.21924 1.00890 0.94693 0.99722 1.21486 0.92523 0.97756 1.03308 1.22154 0.93579 0.83687 0.97386 0.92251 1.86512 1.23983 1.30676 1.95786 1.22238 0.97791 0.84777 0.99315 1.20965 0.92399 0.97540 0.97156 1.20972 1.01250 0.90504 1.10184 1.18622 0.87705 0.87040 0.96585 1.83586 1.20432 1.27537 1.77518 1.20909 0.77048 0.97216 1.51072 0.87152 1.24526 0.94545 0.99777 0.95017 1.69621 1.03131 1.32101 1.45167 0.86168 0.80427 0.81405 0.79087 1.19622 1.20615 1.17675 0.88929 0.93247 0.93251 0.85654 0.85883 0.85286 0.91111 0.88550 0.89606 0.91022 0.90948 0.90890 0.77204 0.88905 0.90993 0.86428 0.83841 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.31 -5.94 10.28 -34.19 -0.35 -6.29 16 3 C 0.05 1.02 6.70 -39.12 -0.26 0.76 16 4 C -0.14 -2.25 8.77 -38.99 -0.34 -2.60 16 5 C -0.16 -2.53 5.87 -105.04 -0.62 -3.14 16 6 C 0.03 0.49 9.45 -37.19 -0.35 0.13 16 7 C -0.28 -3.60 8.72 -37.51 -0.33 -3.93 16 8 C 0.56 7.68 7.61 -13.04 -0.10 7.58 16 9 O -0.56 -9.36 15.66 5.17 0.08 -9.28 16 10 N -0.61 -6.55 2.98 -174.44 -0.52 -7.07 16 11 C 0.10 0.83 6.31 -3.69 -0.02 0.80 16 12 C -0.13 -0.92 6.08 -26.62 -0.16 -1.08 16 13 C -0.11 -0.84 5.54 -26.69 -0.15 -0.99 16 14 C 0.09 0.77 3.62 -26.61 -0.10 0.67 16 15 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 16 O -0.56 -4.63 13.32 -35.23 -0.47 -5.10 16 17 C 0.08 0.78 6.06 -3.71 -0.02 0.76 16 18 C -0.06 -1.03 9.40 -39.13 -0.37 -1.40 16 19 C -0.21 -4.16 9.14 -39.49 -0.36 -4.52 16 20 C 0.16 3.46 6.67 -38.76 -0.26 3.20 16 21 O -0.19 -4.82 8.35 -13.95 -0.12 -4.93 16 22 C -0.39 -10.35 9.94 30.91 0.31 -10.04 16 23 H 0.11 2.94 5.41 -52.49 -0.28 2.66 16 24 C 0.07 1.79 5.49 -17.51 -0.10 1.70 16 25 N -0.86 -23.68 13.96 55.48 0.77 -22.90 16 26 Si 0.90 20.99 28.62 -169.99 -4.86 16.13 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.25 -6.02 7.11 56.52 0.40 -5.62 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 32 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 33 H 0.13 1.72 6.28 -52.48 -0.33 1.39 16 34 H 0.12 1.73 7.53 -52.49 -0.40 1.34 16 35 H 0.13 1.45 3.91 -52.49 -0.21 1.24 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.74 5.38 -51.93 -0.28 0.46 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.38 1.69 9.08 45.56 0.41 2.11 16 43 H 0.09 0.97 6.99 -51.93 -0.36 0.61 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.12 1.59 6.15 -52.49 -0.32 1.26 16 46 H 0.14 2.91 5.61 -52.49 -0.29 2.62 16 47 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -32.13 384.80 -7.28 -39.41 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.37 Total: 4.96 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.24 Total: -10.72 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.25 Total: -29.98 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.86 Total: -25.60 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.86 Total: 16.13 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.13 -7.28 -39.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298116395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.687 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds