Wall clock time and date at job start Wed Apr 1 2020 05:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35948 * 117.00079 * 2 1 4 4 C 1.38077 * 120.00437 * 0.24928 * 3 2 1 5 5 C 1.39974 * 119.84180 * 180.22927 * 4 3 2 6 6 C 1.46964 * 120.07949 * 179.76910 * 5 4 3 7 7 C 1.35022 * 119.99787 * 179.72647 * 6 5 4 8 8 C 1.46256 * 119.99744 * 180.02562 * 7 6 5 9 9 O 1.21720 * 120.00242 * 4.96538 * 8 7 6 10 10 N 1.34783 * 119.99716 * 184.97037 * 8 7 6 11 11 C 1.46961 * 120.65652 * 354.44472 * 10 8 7 12 12 C 1.53187 * 108.89028 * 233.53922 * 11 10 8 13 13 C 1.53036 * 109.31549 * 305.44395 * 12 11 10 14 14 C 1.53047 * 109.53592 * 61.36563 * 13 12 11 15 15 H 1.09004 * 109.51986 * 58.60317 * 14 13 12 16 16 O 1.42898 * 109.49499 * 178.68109 * 14 13 12 17 17 C 1.46928 * 120.62656 * 174.63920 * 10 8 7 18 18 C 1.40027 * 119.83905 * 359.50028 * 5 4 3 19 19 C 1.37652 * 120.00358 * 0.26908 * 18 5 4 20 20 C 1.39059 * 120.15818 * 359.97438 * 19 18 5 21 21 O 1.35612 * 119.91772 * 180.02562 * 20 19 18 22 22 C 1.34763 * 116.99962 * 5.32519 * 21 20 19 23 23 H 1.07995 * 120.00213 * 354.96977 * 22 21 20 24 24 C 1.38708 * 119.99474 * 174.97011 * 22 21 20 25 25 N 1.31522 * 119.99797 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00433 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46989 * 90.00279 * 26 24 22 28 28 H 1.48499 * 109.47408 * 210.00073 * 26 24 22 29 29 H 1.48496 * 109.47285 * 330.00269 * 26 24 22 30 30 H 1.08997 * 109.47037 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47010 * 300.00473 * 1 2 3 32 32 H 1.09001 * 109.46746 * 60.00377 * 1 2 3 33 33 H 1.08003 * 120.07644 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.99931 * 359.72661 * 6 5 4 35 35 H 1.08000 * 120.00473 * 0.02562 * 7 6 5 36 36 H 1.08999 * 109.46385 * 113.75287 * 11 10 8 37 37 H 1.09004 * 109.59106 * 353.40492 * 11 10 8 38 38 H 1.08997 * 109.49437 * 185.49033 * 12 11 10 39 39 H 1.09007 * 109.52287 * 65.41481 * 12 11 10 40 40 H 1.08995 * 109.46006 * 301.34615 * 13 12 11 41 41 H 1.09003 * 109.44681 * 181.37710 * 13 12 11 42 42 H 0.96703 * 113.99788 * 179.83873 * 16 14 13 43 43 H 1.09002 * 109.59000 * 6.59836 * 17 10 8 44 44 H 1.08997 * 109.58222 * 246.31603 * 17 10 8 45 45 H 1.07997 * 119.99896 * 180.24744 * 18 5 4 46 46 H 1.07999 * 119.91550 * 179.97438 * 19 18 5 47 47 H 0.97001 * 120.00450 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2944 2.3694 0.0052 5 6 1.9334 3.6147 0.0003 6 6 1.1381 4.8506 0.0007 7 6 1.7563 6.0511 0.0016 8 6 0.9649 7.2810 0.0025 9 8 -0.2476 7.2246 0.0937 10 7 1.5782 8.4770 -0.0977 11 6 3.0448 8.5703 -0.0865 12 6 3.4703 9.5632 0.9997 13 6 2.7573 10.8981 0.7727 14 6 1.2438 10.6933 0.8716 15 1 0.9944 10.2882 1.8523 16 8 0.5802 11.9457 0.6900 17 6 0.7930 9.7133 -0.2161 18 6 3.3321 3.6801 0.0008 19 6 4.0754 2.5215 0.0004 20 6 3.4406 1.2843 0.0001 21 8 4.1776 0.1459 0.0003 22 6 5.5136 0.2821 0.1122 23 1 5.9578 1.2665 0.1147 24 6 6.3183 -0.8421 0.2242 25 7 7.6222 -0.7092 0.3339 26 14 5.5501 -2.5448 0.2207 27 1 5.4681 -3.0479 -1.1741 28 1 6.3859 -3.4667 1.0310 29 1 4.1856 -2.4735 0.8022 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2157 2.3144 0.0097 34 1 0.0594 4.7987 0.0003 35 1 2.8350 6.1031 0.0016 36 1 3.3939 8.9199 -1.0581 37 1 3.4718 7.5903 0.1265 38 1 4.5487 9.7141 0.9523 39 1 3.2008 9.1688 1.9795 40 1 3.0081 11.2801 -0.2169 41 1 3.0771 11.6138 1.5301 42 1 -0.3841 11.8905 0.7378 43 1 -0.2657 9.4875 -0.0885 44 1 0.9562 10.1570 -1.1982 45 1 3.8278 4.6396 0.0011 46 1 5.1541 2.5736 0.0004 47 1 8.1850 -1.4954 0.4119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298116395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:23 Heat of formation + Delta-G solvation = -122.157638 kcal Electronic energy + Delta-G solvation = -29561.551737 eV Core-core repulsion = 25289.281959 eV Total energy + Delta-G solvation = -4272.269778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.47801 -41.22529 -39.43696 -39.09331 -38.13119 -36.84278 -34.70019 -34.14541 -33.45689 -31.46299 -31.15871 -30.08964 -27.98847 -27.43209 -26.53721 -24.68750 -23.95906 -23.33012 -22.31463 -21.13317 -19.93836 -19.66678 -19.50326 -18.58615 -18.14025 -17.74979 -17.22737 -16.78792 -16.73814 -16.43258 -16.27903 -15.70878 -15.62386 -15.56011 -15.43398 -15.20062 -15.03845 -14.81994 -14.27434 -14.21262 -13.99421 -13.84949 -13.60042 -13.39670 -13.29901 -13.01772 -12.86455 -12.75646 -12.59629 -12.15570 -12.11347 -12.07878 -12.03779 -11.94888 -11.56456 -11.42250 -11.25353 -11.06387 -10.89391 -10.61987 -9.70831 -9.49559 -8.61182 -8.52485 -6.19499 -0.38173 0.49438 1.03739 1.31546 1.35625 1.53266 1.91292 2.25173 2.27997 2.48402 2.78054 2.93739 3.10630 3.21958 3.47568 3.77641 3.80028 3.83904 3.96179 4.02755 4.09229 4.14844 4.23317 4.29953 4.32360 4.43897 4.48384 4.49642 4.52230 4.63394 4.73291 4.74547 4.77328 4.87386 4.89955 5.00743 5.07573 5.10182 5.14255 5.31415 5.33133 5.44251 5.51063 5.58874 5.72731 5.76876 6.00368 6.32637 6.54254 6.74400 6.81827 7.10528 7.56623 8.57807 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.002132 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.750100 B =13128.646848 C =14687.393749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.049 3.951 4 C -0.133 4.133 5 C -0.122 4.122 6 C 0.015 3.985 7 C -0.241 4.241 8 C 0.551 3.449 9 O -0.591 6.591 10 N -0.605 5.605 11 C 0.094 3.906 12 C -0.128 4.128 13 C -0.113 4.113 14 C 0.097 3.903 15 H 0.052 0.948 16 O -0.575 6.575 17 C 0.082 3.918 18 C -0.069 4.069 19 C -0.207 4.207 20 C 0.109 3.891 21 O -0.229 6.229 22 C -0.398 4.398 23 H 0.093 0.907 24 C 0.017 3.983 25 N -0.913 5.913 26 Si 0.961 3.039 27 H -0.267 1.267 28 H -0.266 1.266 29 H -0.267 1.267 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.160 0.840 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.395 0.605 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.155 0.845 46 H 0.130 0.870 47 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.813 19.878 -0.112 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.004 3.996 4 C -0.152 4.152 5 C -0.123 4.123 6 C -0.005 4.005 7 C -0.261 4.261 8 C 0.344 3.656 9 O -0.475 6.475 10 N -0.338 5.338 11 C -0.028 4.028 12 C -0.166 4.166 13 C -0.151 4.151 14 C 0.037 3.963 15 H 0.070 0.930 16 O -0.382 6.382 17 C -0.041 4.041 18 C -0.087 4.087 19 C -0.226 4.226 20 C 0.059 3.941 21 O -0.135 6.135 22 C -0.474 4.474 23 H 0.111 0.889 24 C -0.183 4.183 25 N -0.552 5.552 26 Si 0.784 3.216 27 H -0.192 1.192 28 H -0.191 1.191 29 H -0.192 1.192 30 H 0.131 0.869 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.178 0.822 34 H 0.148 0.852 35 H 0.170 0.830 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.245 0.755 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.172 0.828 46 H 0.147 0.853 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.585 19.570 -0.119 23.267 hybrid contribution -0.543 -0.865 0.065 1.024 sum -13.128 18.704 -0.054 22.851 Atomic orbital electron populations 1.23323 0.76784 1.05233 1.02279 1.86145 1.23167 1.26471 1.89826 1.18253 0.88650 0.85994 1.06719 1.21286 1.00366 0.89837 1.03670 1.18558 0.92792 0.92206 1.08775 1.22172 0.99424 0.90291 0.88602 1.22899 1.01194 0.90983 1.11026 1.18557 0.87022 0.84711 0.75281 1.90758 1.15986 1.87788 1.52943 1.47956 1.08232 1.05333 1.72244 1.22187 0.77641 1.02240 1.00700 1.21905 1.02084 0.93823 0.98829 1.21517 0.91738 0.98236 1.03610 1.22077 0.94326 0.83445 0.96404 0.93020 1.86490 1.25509 1.30528 1.95700 1.22311 0.97024 0.84478 1.00278 1.21273 0.92670 0.97849 0.96910 1.21063 1.00986 0.91155 1.09446 1.19256 0.89068 0.87262 0.98560 1.83553 1.19447 1.28902 1.81642 1.20830 0.78225 0.96683 1.51639 0.88932 1.25166 0.94971 1.02688 0.95434 1.69686 1.03969 1.32807 1.48782 0.85341 0.78847 0.78245 0.79141 1.19225 1.19076 1.19195 0.86931 0.91560 0.91434 0.82221 0.85204 0.82953 0.89442 0.87843 0.87477 0.91623 0.90612 0.90646 0.75504 0.90201 0.90082 0.82799 0.85276 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.34 -12.99 10.28 -78.99 -0.81 -13.80 16 3 C 0.05 1.91 6.70 22.57 0.15 2.06 16 4 C -0.13 -4.06 8.77 22.65 0.20 -3.86 16 5 C -0.12 -3.54 5.87 -20.14 -0.12 -3.65 16 6 C 0.01 0.37 9.45 23.82 0.23 0.59 16 7 C -0.24 -5.26 8.72 23.61 0.21 -5.05 16 8 C 0.55 13.30 7.61 86.33 0.66 13.95 16 9 O -0.59 -18.41 15.66 -4.41 -0.07 -18.48 16 10 N -0.60 -10.93 2.98 -824.00 -2.46 -13.38 16 11 C 0.09 1.12 6.31 86.35 0.54 1.66 16 12 C -0.13 -1.28 6.08 30.67 0.19 -1.09 16 13 C -0.11 -1.34 5.54 30.62 0.17 -1.17 16 14 C 0.10 1.39 3.62 30.67 0.11 1.50 16 15 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 16 O -0.58 -8.13 13.32 -148.98 -1.98 -10.12 16 17 C 0.08 1.35 6.06 86.36 0.52 1.87 16 18 C -0.07 -2.12 9.40 22.57 0.21 -1.91 16 19 C -0.21 -8.33 9.14 22.33 0.20 -8.13 16 20 C 0.11 5.01 6.67 22.80 0.15 5.16 16 21 O -0.23 -12.39 8.35 -6.57 -0.05 -12.44 16 22 C -0.40 -22.67 9.94 67.93 0.68 -21.99 16 23 H 0.09 5.35 5.41 -2.91 -0.02 5.33 16 24 C 0.02 0.98 5.49 84.85 0.47 1.44 16 25 N -0.91 -52.79 13.96 21.62 0.30 -52.48 16 26 Si 0.96 45.45 28.62 68.60 1.96 47.41 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 29 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 30 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 1.34 7.65 -2.39 -0.02 1.33 16 32 H 0.07 1.35 7.67 -2.39 -0.02 1.33 16 33 H 0.16 3.73 6.28 -2.91 -0.02 3.72 16 34 H 0.13 3.14 7.53 -2.91 -0.02 3.12 16 35 H 0.15 2.60 3.91 -2.91 -0.01 2.58 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 1.08 5.38 -2.38 -0.01 1.07 16 38 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.40 2.75 9.08 -74.06 -0.67 2.07 16 43 H 0.08 1.54 6.99 -2.39 -0.02 1.52 16 44 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.15 3.52 6.15 -2.91 -0.02 3.50 16 46 H 0.13 5.53 5.61 -2.91 -0.02 5.52 16 47 H 0.29 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -74.48 384.80 2.92 -71.56 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.35 Total: 18.80 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 5.68 Total: -17.06 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -2.15 Total: -65.87 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -2.92 Total: -54.83 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.96 Total: 47.41 kcal Total: -74.48 2.92 -71.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298116395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.603 kcal (2) G-P(sol) polarization free energy of solvation -74.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds