Wall clock time and date at job start Wed Apr 1 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99940 * 2 1 4 4 C 1.53007 * 109.47107 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46895 * 62.47022 * 4 3 2 6 6 C 1.36940 * 120.00352 * 88.46235 * 5 4 3 7 7 H 1.07997 * 119.99459 * 37.57959 * 6 5 4 8 8 C 1.38808 * 120.00097 * 217.30376 * 6 5 4 9 9 N 1.31620 * 120.00078 * 211.70194 * 8 6 5 10 10 Si 1.86802 * 119.99916 * 31.71139 * 8 6 5 11 11 H 1.48501 * 109.47173 * 88.49959 * 10 8 6 12 12 H 1.48507 * 109.46629 * 208.49450 * 10 8 6 13 13 H 1.48496 * 109.47300 * 328.49464 * 10 8 6 14 14 C 1.46500 * 119.99763 * 268.46976 * 5 4 3 15 15 C 1.53001 * 109.47144 * 274.60038 * 14 5 4 16 16 H 1.08997 * 109.46651 * 59.99950 * 15 14 5 17 17 O 1.42903 * 109.47162 * 300.00383 * 15 14 5 18 18 C 1.52998 * 109.47343 * 179.97438 * 15 14 5 19 19 C 1.50696 * 109.47226 * 184.99932 * 18 15 14 20 20 C 1.38238 * 120.00422 * 269.73176 * 19 18 15 21 21 C 1.38233 * 120.00060 * 179.78721 * 20 19 18 22 22 C 1.38233 * 120.00186 * 0.46217 * 21 20 19 23 23 C 1.50696 * 120.00159 * 179.79077 * 22 21 20 24 24 F 1.39897 * 109.47114 * 269.97826 * 23 22 21 25 25 F 1.39902 * 109.47180 * 29.97716 * 23 22 21 26 26 F 1.39902 * 109.47165 * 149.97545 * 23 22 21 27 27 C 1.38237 * 119.99636 * 359.76667 * 22 21 20 28 28 C 1.38230 * 120.00521 * 0.02562 * 27 22 21 29 29 H 1.09000 * 109.47162 * 59.99743 * 1 2 3 30 30 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47102 * 300.00080 * 1 2 3 32 32 H 1.09001 * 109.46870 * 60.00223 * 3 2 1 33 33 H 1.08996 * 109.47889 * 300.00347 * 3 2 1 34 34 H 1.08994 * 109.47160 * 302.46855 * 4 3 2 35 35 H 1.09005 * 109.47052 * 182.46431 * 4 3 2 36 36 H 0.96998 * 120.00144 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47576 * 34.60393 * 14 5 4 38 38 H 1.09002 * 109.47049 * 154.60121 * 14 5 4 39 39 H 0.96706 * 113.99923 * 299.99563 * 17 15 14 40 40 H 1.09001 * 109.47189 * 305.00511 * 18 15 14 41 41 H 1.09003 * 109.46963 * 65.00378 * 18 15 14 42 42 H 1.07995 * 119.99456 * 359.97438 * 20 19 18 43 43 H 1.08003 * 120.00093 * 180.25186 * 21 20 19 44 44 H 1.08000 * 119.99806 * 180.02562 * 27 22 21 45 45 H 1.07995 * 120.00554 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9723 0.5094 -1.2239 6 6 4.2294 1.2392 -2.3538 7 1 4.6998 2.2082 -2.2753 8 6 3.8907 0.7310 -3.6003 9 7 4.6169 1.0359 -4.6548 10 14 2.4040 -0.3855 -3.7812 11 1 1.1934 0.4383 -4.0283 12 1 2.6154 -1.3099 -4.9240 13 1 2.2214 -1.1724 -2.5352 14 6 4.1339 -0.9465 -1.2397 15 6 5.5287 -1.3104 -0.7266 16 1 5.6483 -0.9426 0.2924 17 8 6.5168 -0.7123 -1.5680 18 6 5.6973 -2.8310 -0.7425 19 6 7.0219 -3.1961 -0.1236 20 6 8.1499 -3.2999 -0.9159 21 6 9.3658 -3.6304 -0.3475 22 6 9.4520 -3.8665 1.0118 23 6 10.7766 -4.2315 1.6308 24 9 10.9304 -5.6219 1.6171 25 9 11.8120 -3.6405 0.8987 26 9 10.8171 -3.7707 2.9511 27 6 8.3230 -3.7673 1.8034 28 6 7.1079 -3.4326 1.2357 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 3.8537 0.6062 0.8679 35 1 3.9787 2.1795 0.0448 36 1 4.3800 0.6810 -5.5259 37 1 3.3802 -1.4028 -0.5979 38 1 4.0143 -1.3143 -2.2588 39 1 6.4700 -0.9946 -2.4918 40 1 4.8905 -3.2920 -0.1727 41 1 5.6661 -3.1893 -1.7715 42 1 8.0817 -3.1198 -1.9786 43 1 10.2479 -3.7075 -0.9659 44 1 8.3903 -3.9514 2.8655 45 1 6.2259 -3.3555 1.8540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459540665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:08 Heat of formation + Delta-G solvation = -197.363934 kcal Electronic energy + Delta-G solvation = -31137.765497 eV Core-core repulsion = 26320.377788 eV Total energy + Delta-G solvation = -4817.387708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.26576 -47.77973 -47.73511 -39.65316 -37.80333 -36.97092 -34.80409 -33.08680 -31.75243 -31.14870 -30.16118 -28.80448 -26.76493 -25.87549 -24.60500 -23.33505 -22.98483 -21.86938 -20.81807 -20.13321 -18.60968 -18.52863 -18.46245 -17.14371 -16.07359 -15.73795 -15.66008 -15.44206 -15.19235 -14.93265 -14.73464 -14.59519 -14.54397 -14.41615 -14.22604 -14.18835 -13.98658 -13.89670 -13.81785 -13.65575 -13.46286 -12.77704 -12.68849 -12.47163 -12.31380 -11.80370 -11.70578 -11.48411 -11.35647 -11.23291 -11.05871 -10.73911 -10.69402 -10.42785 -10.37382 -10.01550 -9.53751 -9.34798 -9.10996 -9.09043 -8.81456 -8.41186 -6.76495 -6.03676 -3.32262 0.89497 1.24448 2.57161 3.35721 3.44274 3.49154 3.59539 3.63593 3.93321 4.32317 4.33088 4.56197 4.68199 4.72970 4.77557 4.97390 5.14241 5.27284 5.28965 5.39020 5.47751 5.51284 5.58299 5.61289 5.67004 5.85255 5.86276 5.93976 5.97595 6.01152 6.03548 6.10469 6.14006 6.14231 6.28560 6.47597 6.51897 6.64565 6.73792 6.75661 6.90967 7.67730 8.03532 8.40181 8.53944 9.01572 9.73571 10.17380 11.11729 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.002667 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.064960 B =10497.882360 C =11313.389856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.037 3.963 4 C 0.151 3.849 5 N -0.585 5.585 6 C -0.258 4.258 7 H 0.073 0.927 8 C 0.043 3.957 9 N -0.886 5.886 10 Si 0.839 3.161 11 H -0.295 1.295 12 H -0.301 1.301 13 H -0.247 1.247 14 C 0.124 3.876 15 C 0.095 3.905 16 H 0.084 0.916 17 O -0.539 6.539 18 C -0.127 4.127 19 C -0.026 4.026 20 C -0.106 4.106 21 C -0.068 4.068 22 C -0.199 4.199 23 C 0.510 3.490 24 F -0.181 7.181 25 F -0.178 7.178 26 F -0.180 7.180 27 C -0.071 4.071 28 C -0.124 4.124 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.260 0.740 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.371 0.629 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.096 -10.795 12.111 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.042 4.042 4 C 0.024 3.976 5 N -0.305 5.305 6 C -0.386 4.386 7 H 0.091 0.909 8 C -0.158 4.158 9 N -0.526 5.526 10 Si 0.666 3.334 11 H -0.223 1.223 12 H -0.228 1.228 13 H -0.171 1.171 14 C -0.002 4.002 15 C 0.032 3.968 16 H 0.102 0.898 17 O -0.343 6.343 18 C -0.165 4.165 19 C -0.026 4.026 20 C -0.124 4.124 21 C -0.087 4.087 22 C -0.200 4.200 23 C 0.456 3.544 24 F -0.162 7.162 25 F -0.160 7.160 26 F -0.161 7.161 27 C -0.089 4.089 28 C -0.142 4.142 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.217 0.783 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.464 -10.663 12.499 17.025 hybrid contribution -1.205 -0.647 -0.727 1.549 sum 3.259 -11.311 11.772 16.647 Atomic orbital electron populations 1.22629 0.83025 1.01667 0.99163 1.87913 1.17965 1.28805 1.95179 1.23486 0.98036 0.83972 0.98659 1.21002 0.89074 0.97639 0.89883 1.43807 1.76244 1.01616 1.08797 1.18635 1.33540 1.03706 0.82757 0.90939 1.25402 0.97518 0.97567 0.95327 1.70051 1.36179 1.46294 1.00078 0.87575 0.86811 0.81232 0.77752 1.22278 1.22773 1.17131 1.21920 0.92945 0.85693 0.99691 1.22644 0.91663 0.87194 0.95287 0.89840 1.86545 1.54110 1.71025 1.22590 1.21616 0.93386 0.99921 1.01566 1.20158 0.96035 0.92935 0.93483 1.21068 0.91363 0.99195 1.00768 1.20899 0.98812 0.96170 0.92782 1.19849 0.92245 1.11917 0.96014 1.18359 0.85588 0.74472 0.76031 1.93209 1.96331 1.30354 1.96303 1.93186 1.61655 1.83907 1.77231 1.93177 1.96853 1.88719 1.37361 1.20834 0.91553 0.96900 0.99616 1.21039 0.97472 1.00920 0.94755 0.94740 0.90610 0.94950 0.95116 0.93191 0.93610 0.91538 0.92980 0.92923 0.92528 0.78285 0.89999 0.90355 0.84755 0.85020 0.85135 0.85007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -6.89 9.50 -35.23 -0.33 -7.23 16 3 C 0.04 0.66 6.29 37.16 0.23 0.89 16 4 C 0.15 2.83 6.10 -4.04 -0.02 2.80 16 5 N -0.58 -12.82 1.90 -173.23 -0.33 -13.15 16 6 C -0.26 -6.73 9.41 -15.06 -0.14 -6.87 16 7 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 8 C 0.04 1.15 5.06 -17.43 -0.09 1.06 16 9 N -0.89 -25.47 13.97 55.49 0.78 -24.69 16 10 Si 0.84 20.51 26.42 -169.99 -4.49 16.02 16 11 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.25 -5.74 5.51 56.52 0.31 -5.43 16 14 C 0.12 2.44 3.34 -4.04 -0.01 2.43 16 15 C 0.09 1.59 3.22 -26.73 -0.09 1.51 16 16 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 17 O -0.54 -10.47 12.34 -35.23 -0.43 -10.91 16 18 C -0.13 -1.68 5.03 -27.89 -0.14 -1.82 16 19 C -0.03 -0.33 4.96 -104.62 -0.52 -0.85 16 20 C -0.11 -1.32 9.42 -39.58 -0.37 -1.69 16 21 C -0.07 -0.81 9.40 -39.59 -0.37 -1.19 16 22 C -0.20 -2.37 5.45 -104.63 -0.57 -2.94 16 23 C 0.51 5.88 3.36 36.00 0.12 6.00 16 24 F -0.18 -2.09 17.30 2.25 0.04 -2.05 16 25 F -0.18 -2.13 16.46 2.25 0.04 -2.10 16 26 F -0.18 -2.09 16.46 2.25 0.04 -2.05 16 27 C -0.07 -0.80 9.40 -39.58 -0.37 -1.17 16 28 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 35 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.05 1.00 7.13 -51.93 -0.37 0.63 16 38 H 0.06 1.21 4.37 -51.93 -0.23 0.98 16 39 H 0.37 6.96 9.05 45.56 0.41 7.38 16 40 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 42 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 43 H 0.13 1.35 7.60 -52.48 -0.40 0.95 16 44 H 0.13 1.21 7.60 -52.49 -0.40 0.81 16 45 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -30.07 384.62 -6.21 -36.28 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.69 Total: 6.14 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.62 Total: -2.07 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.45 Total: -37.84 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.77 Total: -18.13 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.11 Total: -6.20 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.49 Total: 16.02 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.07 -6.21 -36.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459540665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.081 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds