Wall clock time and date at job start Wed Apr 1 2020 05:26:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42897 * 113.99940 * 2 1
4 4 C 1.53007 * 109.47107 * 179.97438 * 3 2 1
5 5 N 1.46499 * 109.46895 * 62.47022 * 4 3 2
6 6 C 1.36940 * 120.00352 * 88.46235 * 5 4 3
7 7 H 1.07997 * 119.99459 * 37.57959 * 6 5 4
8 8 C 1.38808 * 120.00097 * 217.30376 * 6 5 4
9 9 N 1.31620 * 120.00078 * 211.70194 * 8 6 5
10 10 Si 1.86802 * 119.99916 * 31.71139 * 8 6 5
11 11 H 1.48501 * 109.47173 * 88.49959 * 10 8 6
12 12 H 1.48507 * 109.46629 * 208.49450 * 10 8 6
13 13 H 1.48496 * 109.47300 * 328.49464 * 10 8 6
14 14 C 1.46500 * 119.99763 * 268.46976 * 5 4 3
15 15 C 1.53001 * 109.47144 * 274.60038 * 14 5 4
16 16 H 1.08997 * 109.46651 * 59.99950 * 15 14 5
17 17 O 1.42903 * 109.47162 * 300.00383 * 15 14 5
18 18 C 1.52998 * 109.47343 * 179.97438 * 15 14 5
19 19 C 1.50696 * 109.47226 * 184.99932 * 18 15 14
20 20 C 1.38238 * 120.00422 * 269.73176 * 19 18 15
21 21 C 1.38233 * 120.00060 * 179.78721 * 20 19 18
22 22 C 1.38233 * 120.00186 * 0.46217 * 21 20 19
23 23 C 1.50696 * 120.00159 * 179.79077 * 22 21 20
24 24 F 1.39897 * 109.47114 * 269.97826 * 23 22 21
25 25 F 1.39902 * 109.47180 * 29.97716 * 23 22 21
26 26 F 1.39902 * 109.47165 * 149.97545 * 23 22 21
27 27 C 1.38237 * 119.99636 * 359.76667 * 22 21 20
28 28 C 1.38230 * 120.00521 * 0.02562 * 27 22 21
29 29 H 1.09000 * 109.47162 * 59.99743 * 1 2 3
30 30 H 1.08998 * 109.47234 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47102 * 300.00080 * 1 2 3
32 32 H 1.09001 * 109.46870 * 60.00223 * 3 2 1
33 33 H 1.08996 * 109.47889 * 300.00347 * 3 2 1
34 34 H 1.08994 * 109.47160 * 302.46855 * 4 3 2
35 35 H 1.09005 * 109.47052 * 182.46431 * 4 3 2
36 36 H 0.96998 * 120.00144 * 180.02562 * 9 8 6
37 37 H 1.09002 * 109.47576 * 34.60393 * 14 5 4
38 38 H 1.09002 * 109.47049 * 154.60121 * 14 5 4
39 39 H 0.96706 * 113.99923 * 299.99563 * 17 15 14
40 40 H 1.09001 * 109.47189 * 305.00511 * 18 15 14
41 41 H 1.09003 * 109.46963 * 65.00378 * 18 15 14
42 42 H 1.07995 * 119.99456 * 359.97438 * 20 19 18
43 43 H 1.08003 * 120.00093 * 180.25186 * 21 20 19
44 44 H 1.08000 * 119.99806 * 180.02562 * 27 22 21
45 45 H 1.07995 * 120.00554 * 179.97438 * 28 27 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1846 0.0006
5 7 3.9723 0.5094 -1.2239
6 6 4.2294 1.2392 -2.3538
7 1 4.6998 2.2082 -2.2753
8 6 3.8907 0.7310 -3.6003
9 7 4.6169 1.0359 -4.6548
10 14 2.4040 -0.3855 -3.7812
11 1 1.1934 0.4383 -4.0283
12 1 2.6154 -1.3099 -4.9240
13 1 2.2214 -1.1724 -2.5352
14 6 4.1339 -0.9465 -1.2397
15 6 5.5287 -1.3104 -0.7266
16 1 5.6483 -0.9426 0.2924
17 8 6.5168 -0.7123 -1.5680
18 6 5.6973 -2.8310 -0.7425
19 6 7.0219 -3.1961 -0.1236
20 6 8.1499 -3.2999 -0.9159
21 6 9.3658 -3.6304 -0.3475
22 6 9.4520 -3.8665 1.0118
23 6 10.7766 -4.2315 1.6308
24 9 10.9304 -5.6219 1.6171
25 9 11.8120 -3.6405 0.8987
26 9 10.8171 -3.7707 2.9511
27 6 8.3230 -3.7673 1.8034
28 6 7.1079 -3.4326 1.2357
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.6885 1.8463 0.8900
33 1 1.6886 1.8465 -0.8899
34 1 3.8537 0.6062 0.8679
35 1 3.9787 2.1795 0.0448
36 1 4.3800 0.6810 -5.5259
37 1 3.3802 -1.4028 -0.5979
38 1 4.0143 -1.3143 -2.2588
39 1 6.4700 -0.9946 -2.4918
40 1 4.8905 -3.2920 -0.1727
41 1 5.6661 -3.1893 -1.7715
42 1 8.0817 -3.1198 -1.9786
43 1 10.2479 -3.7075 -0.9659
44 1 8.3903 -3.9514 2.8655
45 1 6.2259 -3.3555 1.8540
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000459540665.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:26:08
Heat of formation + Delta-G solvation = -197.363934 kcal
Electronic energy + Delta-G solvation = -31137.765497 eV
Core-core repulsion = 26320.377788 eV
Total energy + Delta-G solvation = -4817.387708 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.150 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-50.26576 -47.77973 -47.73511 -39.65316 -37.80333 -36.97092 -34.80409 -33.08680
-31.75243 -31.14870 -30.16118 -28.80448 -26.76493 -25.87549 -24.60500 -23.33505
-22.98483 -21.86938 -20.81807 -20.13321 -18.60968 -18.52863 -18.46245 -17.14371
-16.07359 -15.73795 -15.66008 -15.44206 -15.19235 -14.93265 -14.73464 -14.59519
-14.54397 -14.41615 -14.22604 -14.18835 -13.98658 -13.89670 -13.81785 -13.65575
-13.46286 -12.77704 -12.68849 -12.47163 -12.31380 -11.80370 -11.70578 -11.48411
-11.35647 -11.23291 -11.05871 -10.73911 -10.69402 -10.42785 -10.37382 -10.01550
-9.53751 -9.34798 -9.10996 -9.09043 -8.81456 -8.41186 -6.76495 -6.03676
-3.32262 0.89497 1.24448 2.57161 3.35721 3.44274 3.49154 3.59539
3.63593 3.93321 4.32317 4.33088 4.56197 4.68199 4.72970 4.77557
4.97390 5.14241 5.27284 5.28965 5.39020 5.47751 5.51284 5.58299
5.61289 5.67004 5.85255 5.86276 5.93976 5.97595 6.01152 6.03548
6.10469 6.14006 6.14231 6.28560 6.47597 6.51897 6.64565 6.73792
6.75661 6.90967 7.67730 8.03532 8.40181 8.53944 9.01572 9.73571
10.17380 11.11729
Molecular weight = 347.15amu
Principal moments of inertia in cm(-1)
A = 0.015887 B = 0.002667 C = 0.002474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1762.064960 B =10497.882360 C =11313.389856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.380 6.380
3 C 0.037 3.963
4 C 0.151 3.849
5 N -0.585 5.585
6 C -0.258 4.258
7 H 0.073 0.927
8 C 0.043 3.957
9 N -0.886 5.886
10 Si 0.839 3.161
11 H -0.295 1.295
12 H -0.301 1.301
13 H -0.247 1.247
14 C 0.124 3.876
15 C 0.095 3.905
16 H 0.084 0.916
17 O -0.539 6.539
18 C -0.127 4.127
19 C -0.026 4.026
20 C -0.106 4.106
21 C -0.068 4.068
22 C -0.199 4.199
23 C 0.510 3.490
24 F -0.181 7.181
25 F -0.178 7.178
26 F -0.180 7.180
27 C -0.071 4.071
28 C -0.124 4.124
29 H 0.034 0.966
30 H 0.075 0.925
31 H 0.032 0.968
32 H 0.031 0.969
33 H 0.050 0.950
34 H 0.045 0.955
35 H 0.066 0.934
36 H 0.260 0.740
37 H 0.053 0.947
38 H 0.057 0.943
39 H 0.371 0.629
40 H 0.081 0.919
41 H 0.078 0.922
42 H 0.135 0.865
43 H 0.132 0.868
44 H 0.131 0.869
45 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.096 -10.795 12.111 16.733
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.299 6.299
3 C -0.042 4.042
4 C 0.024 3.976
5 N -0.305 5.305
6 C -0.386 4.386
7 H 0.091 0.909
8 C -0.158 4.158
9 N -0.526 5.526
10 Si 0.666 3.334
11 H -0.223 1.223
12 H -0.228 1.228
13 H -0.171 1.171
14 C -0.002 4.002
15 C 0.032 3.968
16 H 0.102 0.898
17 O -0.343 6.343
18 C -0.165 4.165
19 C -0.026 4.026
20 C -0.124 4.124
21 C -0.087 4.087
22 C -0.200 4.200
23 C 0.456 3.544
24 F -0.162 7.162
25 F -0.160 7.160
26 F -0.161 7.161
27 C -0.089 4.089
28 C -0.142 4.142
29 H 0.053 0.947
30 H 0.094 0.906
31 H 0.051 0.949
32 H 0.049 0.951
33 H 0.068 0.932
34 H 0.064 0.936
35 H 0.085 0.915
36 H 0.070 0.930
37 H 0.071 0.929
38 H 0.075 0.925
39 H 0.217 0.783
40 H 0.100 0.900
41 H 0.096 0.904
42 H 0.152 0.848
43 H 0.150 0.850
44 H 0.149 0.851
45 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 4.464 -10.663 12.499 17.025
hybrid contribution -1.205 -0.647 -0.727 1.549
sum 3.259 -11.311 11.772 16.647
Atomic orbital electron populations
1.22629 0.83025 1.01667 0.99163 1.87913 1.17965 1.28805 1.95179
1.23486 0.98036 0.83972 0.98659 1.21002 0.89074 0.97639 0.89883
1.43807 1.76244 1.01616 1.08797 1.18635 1.33540 1.03706 0.82757
0.90939 1.25402 0.97518 0.97567 0.95327 1.70051 1.36179 1.46294
1.00078 0.87575 0.86811 0.81232 0.77752 1.22278 1.22773 1.17131
1.21920 0.92945 0.85693 0.99691 1.22644 0.91663 0.87194 0.95287
0.89840 1.86545 1.54110 1.71025 1.22590 1.21616 0.93386 0.99921
1.01566 1.20158 0.96035 0.92935 0.93483 1.21068 0.91363 0.99195
1.00768 1.20899 0.98812 0.96170 0.92782 1.19849 0.92245 1.11917
0.96014 1.18359 0.85588 0.74472 0.76031 1.93209 1.96331 1.30354
1.96303 1.93186 1.61655 1.83907 1.77231 1.93177 1.96853 1.88719
1.37361 1.20834 0.91553 0.96900 0.99616 1.21039 0.97472 1.00920
0.94755 0.94740 0.90610 0.94950 0.95116 0.93191 0.93610 0.91538
0.92980 0.92923 0.92528 0.78285 0.89999 0.90355 0.84755 0.85020
0.85135 0.85007
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.47 11.01 101.05 1.11 1.58 16
2 O -0.38 -6.89 9.50 -35.23 -0.33 -7.23 16
3 C 0.04 0.66 6.29 37.16 0.23 0.89 16
4 C 0.15 2.83 6.10 -4.04 -0.02 2.80 16
5 N -0.58 -12.82 1.90 -173.23 -0.33 -13.15 16
6 C -0.26 -6.73 9.41 -15.06 -0.14 -6.87 16
7 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16
8 C 0.04 1.15 5.06 -17.43 -0.09 1.06 16
9 N -0.89 -25.47 13.97 55.49 0.78 -24.69 16
10 Si 0.84 20.51 26.42 -169.99 -4.49 16.02 16
11 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16
12 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16
13 H -0.25 -5.74 5.51 56.52 0.31 -5.43 16
14 C 0.12 2.44 3.34 -4.04 -0.01 2.43 16
15 C 0.09 1.59 3.22 -26.73 -0.09 1.51 16
16 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16
17 O -0.54 -10.47 12.34 -35.23 -0.43 -10.91 16
18 C -0.13 -1.68 5.03 -27.89 -0.14 -1.82 16
19 C -0.03 -0.33 4.96 -104.62 -0.52 -0.85 16
20 C -0.11 -1.32 9.42 -39.58 -0.37 -1.69 16
21 C -0.07 -0.81 9.40 -39.59 -0.37 -1.19 16
22 C -0.20 -2.37 5.45 -104.63 -0.57 -2.94 16
23 C 0.51 5.88 3.36 36.00 0.12 6.00 16
24 F -0.18 -2.09 17.30 2.25 0.04 -2.05 16
25 F -0.18 -2.13 16.46 2.25 0.04 -2.10 16
26 F -0.18 -2.09 16.46 2.25 0.04 -2.05 16
27 C -0.07 -0.80 9.40 -39.58 -0.37 -1.17 16
28 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16
29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16
33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16
34 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16
35 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16
36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
37 H 0.05 1.00 7.13 -51.93 -0.37 0.63 16
38 H 0.06 1.21 4.37 -51.93 -0.23 0.98 16
39 H 0.37 6.96 9.05 45.56 0.41 7.38 16
40 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16
41 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16
42 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16
43 H 0.13 1.35 7.60 -52.48 -0.40 0.95 16
44 H 0.13 1.21 7.60 -52.49 -0.40 0.81 16
45 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16
LS Contribution 384.62 15.07 5.80 5.80
Total: -1.00 -30.07 384.62 -6.21 -36.28
By element:
Atomic # 1 Polarization: 11.83 SS G_CDS: -5.69 Total: 6.14 kcal
Atomic # 6 Polarization: -0.45 SS G_CDS: -1.62 Total: -2.07 kcal
Atomic # 7 Polarization: -38.28 SS G_CDS: 0.45 Total: -37.84 kcal
Atomic # 8 Polarization: -17.36 SS G_CDS: -0.77 Total: -18.13 kcal
Atomic # 9 Polarization: -6.31 SS G_CDS: 0.11 Total: -6.20 kcal
Atomic # 14 Polarization: 20.51 SS G_CDS: -4.49 Total: 16.02 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -30.07 -6.21 -36.28 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000459540665.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -161.081 kcal
(2) G-P(sol) polarization free energy of solvation -30.070 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.152 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal
(6) G-S(sol) free energy of system = (1) + (5) -197.364 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds