Wall clock time and date at job start Wed Apr 1 2020 05:26:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42897 * 113.99940 * 2 1
4 4 C 1.53007 * 109.47107 * 179.97438 * 3 2 1
5 5 N 1.46499 * 109.46895 * 62.47022 * 4 3 2
6 6 C 1.36940 * 120.00352 * 88.46235 * 5 4 3
7 7 H 1.07997 * 119.99459 * 37.57959 * 6 5 4
8 8 C 1.38808 * 120.00097 * 217.30376 * 6 5 4
9 9 N 1.31620 * 120.00078 * 211.70194 * 8 6 5
10 10 Si 1.86802 * 119.99916 * 31.71139 * 8 6 5
11 11 H 1.48501 * 109.47173 * 88.49959 * 10 8 6
12 12 H 1.48507 * 109.46629 * 208.49450 * 10 8 6
13 13 H 1.48496 * 109.47300 * 328.49464 * 10 8 6
14 14 C 1.46500 * 119.99763 * 268.46976 * 5 4 3
15 15 C 1.53001 * 109.47144 * 274.60038 * 14 5 4
16 16 H 1.08997 * 109.46651 * 59.99950 * 15 14 5
17 17 O 1.42903 * 109.47162 * 300.00383 * 15 14 5
18 18 C 1.52998 * 109.47343 * 179.97438 * 15 14 5
19 19 C 1.50696 * 109.47226 * 184.99932 * 18 15 14
20 20 C 1.38238 * 120.00422 * 269.73176 * 19 18 15
21 21 C 1.38233 * 120.00060 * 179.78721 * 20 19 18
22 22 C 1.38233 * 120.00186 * 0.46217 * 21 20 19
23 23 C 1.50696 * 120.00159 * 179.79077 * 22 21 20
24 24 F 1.39897 * 109.47114 * 269.97826 * 23 22 21
25 25 F 1.39902 * 109.47180 * 29.97716 * 23 22 21
26 26 F 1.39902 * 109.47165 * 149.97545 * 23 22 21
27 27 C 1.38237 * 119.99636 * 359.76667 * 22 21 20
28 28 C 1.38230 * 120.00521 * 0.02562 * 27 22 21
29 29 H 1.09000 * 109.47162 * 59.99743 * 1 2 3
30 30 H 1.08998 * 109.47234 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47102 * 300.00080 * 1 2 3
32 32 H 1.09001 * 109.46870 * 60.00223 * 3 2 1
33 33 H 1.08996 * 109.47889 * 300.00347 * 3 2 1
34 34 H 1.08994 * 109.47160 * 302.46855 * 4 3 2
35 35 H 1.09005 * 109.47052 * 182.46431 * 4 3 2
36 36 H 0.96998 * 120.00144 * 180.02562 * 9 8 6
37 37 H 1.09002 * 109.47576 * 34.60393 * 14 5 4
38 38 H 1.09002 * 109.47049 * 154.60121 * 14 5 4
39 39 H 0.96706 * 113.99923 * 299.99563 * 17 15 14
40 40 H 1.09001 * 109.47189 * 305.00511 * 18 15 14
41 41 H 1.09003 * 109.46963 * 65.00378 * 18 15 14
42 42 H 1.07995 * 119.99456 * 359.97438 * 20 19 18
43 43 H 1.08003 * 120.00093 * 180.25186 * 21 20 19
44 44 H 1.08000 * 119.99806 * 180.02562 * 27 22 21
45 45 H 1.07995 * 120.00554 * 179.97438 * 28 27 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1846 0.0006
5 7 3.9723 0.5094 -1.2239
6 6 4.2294 1.2392 -2.3538
7 1 4.6998 2.2082 -2.2753
8 6 3.8907 0.7310 -3.6003
9 7 4.6169 1.0359 -4.6548
10 14 2.4040 -0.3855 -3.7812
11 1 1.1934 0.4383 -4.0283
12 1 2.6154 -1.3099 -4.9240
13 1 2.2214 -1.1724 -2.5352
14 6 4.1339 -0.9465 -1.2397
15 6 5.5287 -1.3104 -0.7266
16 1 5.6483 -0.9426 0.2924
17 8 6.5168 -0.7123 -1.5680
18 6 5.6973 -2.8310 -0.7425
19 6 7.0219 -3.1961 -0.1236
20 6 8.1499 -3.2999 -0.9159
21 6 9.3658 -3.6304 -0.3475
22 6 9.4520 -3.8665 1.0118
23 6 10.7766 -4.2315 1.6308
24 9 10.9304 -5.6219 1.6171
25 9 11.8120 -3.6405 0.8987
26 9 10.8171 -3.7707 2.9511
27 6 8.3230 -3.7673 1.8034
28 6 7.1079 -3.4326 1.2357
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.6885 1.8463 0.8900
33 1 1.6886 1.8465 -0.8899
34 1 3.8537 0.6062 0.8679
35 1 3.9787 2.1795 0.0448
36 1 4.3800 0.6810 -5.5259
37 1 3.3802 -1.4028 -0.5979
38 1 4.0143 -1.3143 -2.2588
39 1 6.4700 -0.9946 -2.4918
40 1 4.8905 -3.2920 -0.1727
41 1 5.6661 -3.1893 -1.7715
42 1 8.0817 -3.1198 -1.9786
43 1 10.2479 -3.7075 -0.9659
44 1 8.3903 -3.9514 2.8655
45 1 6.2259 -3.3555 1.8540
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000459540665.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:26:07
Heat of formation + Delta-G solvation = -215.561983 kcal
Electronic energy + Delta-G solvation = -31138.554623 eV
Core-core repulsion = 26320.377788 eV
Total energy + Delta-G solvation = -4818.176835 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.150 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-51.18159 -48.70017 -48.64903 -40.61407 -39.22453 -38.30639 -36.40579 -34.19004
-33.71781 -32.03589 -31.48222 -30.19033 -28.08417 -27.15018 -25.89040 -24.84863
-23.87852 -23.12853 -21.90037 -21.76802 -19.52161 -19.42886 -19.37827 -18.93539
-17.50348 -17.15141 -16.92682 -16.77390 -16.50602 -16.17137 -15.84597 -15.76645
-15.61934 -15.47827 -15.38913 -15.22446 -15.11111 -15.06980 -14.89423 -14.81417
-14.53971 -14.34531 -14.27578 -13.62214 -13.43453 -13.22027 -12.95214 -12.88504
-12.69469 -12.52866 -12.34853 -12.23170 -12.00121 -11.97232 -11.88482 -11.74296
-11.17168 -10.88200 -10.51061 -10.40068 -9.98369 -9.84788 -8.57961 -8.12919
-5.36490 -0.03229 0.35619 1.37949 1.48999 1.61964 1.66027 2.51078
2.52626 2.72964 3.01888 3.02770 3.12372 3.41931 3.46613 3.75533
3.82457 3.93896 3.97076 4.23262 4.35250 4.40751 4.42938 4.46017
4.48421 4.57642 4.59498 4.65824 4.68234 4.71266 4.81622 4.82328
4.98359 5.01818 5.03750 5.15990 5.21395 5.23396 5.27465 5.37731
5.64075 5.85538 6.02997 6.28174 6.41881 7.02153 7.16370 7.77932
8.22467 9.06963
Molecular weight = 347.15amu
Principal moments of inertia in cm(-1)
A = 0.015887 B = 0.002667 C = 0.002474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1762.064960 B =10497.882360 C =11313.389856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.401 6.401
3 C 0.045 3.955
4 C 0.146 3.854
5 N -0.596 5.596
6 C -0.238 4.238
7 H 0.032 0.968
8 C -0.001 4.001
9 N -0.932 5.932
10 Si 0.899 3.101
11 H -0.311 1.311
12 H -0.306 1.306
13 H -0.225 1.225
14 C 0.124 3.876
15 C 0.102 3.898
16 H 0.085 0.915
17 O -0.559 6.559
18 C -0.115 4.115
19 C -0.039 4.039
20 C -0.117 4.117
21 C -0.077 4.077
22 C -0.206 4.206
23 C 0.513 3.487
24 F -0.181 7.181
25 F -0.182 7.182
26 F -0.179 7.179
27 C -0.073 4.073
28 C -0.123 4.123
29 H 0.024 0.976
30 H 0.094 0.906
31 H 0.057 0.943
32 H 0.065 0.935
33 H 0.023 0.977
34 H 0.069 0.931
35 H 0.062 0.938
36 H 0.258 0.742
37 H 0.066 0.934
38 H 0.038 0.962
39 H 0.370 0.630
40 H 0.103 0.897
41 H 0.079 0.921
42 H 0.136 0.864
43 H 0.142 0.858
44 H 0.151 0.849
45 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.087 -12.458 14.553 19.404
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.320 6.320
3 C -0.034 4.034
4 C 0.020 3.980
5 N -0.317 5.317
6 C -0.368 4.368
7 H 0.049 0.951
8 C -0.198 4.198
9 N -0.576 5.576
10 Si 0.728 3.272
11 H -0.241 1.241
12 H -0.234 1.234
13 H -0.148 1.148
14 C -0.002 4.002
15 C 0.040 3.960
16 H 0.103 0.897
17 O -0.363 6.363
18 C -0.153 4.153
19 C -0.040 4.040
20 C -0.135 4.135
21 C -0.095 4.095
22 C -0.207 4.207
23 C 0.459 3.541
24 F -0.162 7.162
25 F -0.164 7.164
26 F -0.161 7.161
27 C -0.091 4.091
28 C -0.141 4.141
29 H 0.042 0.958
30 H 0.112 0.888
31 H 0.076 0.924
32 H 0.083 0.917
33 H 0.041 0.959
34 H 0.087 0.913
35 H 0.080 0.920
36 H 0.067 0.933
37 H 0.085 0.915
38 H 0.056 0.944
39 H 0.216 0.784
40 H 0.121 0.879
41 H 0.098 0.902
42 H 0.154 0.846
43 H 0.160 0.840
44 H 0.169 0.831
45 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges 3.438 -12.353 14.993 19.728
hybrid contribution -0.843 -0.089 -1.372 1.612
sum 2.595 -12.442 13.622 18.630
Atomic orbital electron populations
1.22835 0.81098 1.03179 0.99913 1.87853 1.20080 1.28733 1.95343
1.23282 0.96868 0.84204 0.99002 1.21121 0.90217 0.97579 0.89102
1.43901 1.76900 1.02485 1.08433 1.18418 1.31551 1.02415 0.84371
0.95071 1.25772 0.99337 0.99675 0.95052 1.70145 1.37906 1.48996
1.00524 0.86633 0.82903 0.79507 0.78198 1.24053 1.23391 1.14793
1.21947 0.95049 0.84130 0.99041 1.22499 0.89285 0.89732 0.94434
0.89719 1.86522 1.55011 1.71991 1.22816 1.21439 0.94633 0.96919
1.02330 1.20175 0.95602 0.93990 0.94189 1.21202 0.91749 0.99480
1.01094 1.21057 0.99087 0.96168 0.93161 1.20001 0.92641 1.11900
0.96162 1.18304 0.85413 0.74394 0.75955 1.93209 1.96325 1.30370
1.96302 1.93180 1.61845 1.83984 1.77344 1.93176 1.96843 1.88720
1.37324 1.21112 0.91162 0.96192 1.00626 1.21300 0.98385 0.99983
0.94403 0.95773 0.88804 0.92399 0.91675 0.95882 0.91257 0.92008
0.93288 0.91548 0.94413 0.78380 0.87870 0.90207 0.84648 0.84031
0.83140 0.82829
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.67 11.01 113.37 1.25 1.92 16
2 O -0.40 -13.31 9.50 -148.98 -1.41 -14.73 16
3 C 0.05 1.49 6.29 71.98 0.45 1.95 16
4 C 0.15 5.22 6.10 86.38 0.53 5.75 16
5 N -0.60 -25.72 1.90 -701.99 -1.33 -27.05 16
6 C -0.24 -12.65 9.41 84.03 0.79 -11.86 16
7 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16
8 C 0.00 -0.06 5.06 84.86 0.43 0.37 16
9 N -0.93 -55.35 13.97 21.65 0.30 -55.05 16
10 Si 0.90 43.15 26.42 68.60 1.81 44.96 16
11 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16
12 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16
13 H -0.23 -9.85 5.51 99.48 0.55 -9.30 16
14 C 0.12 4.66 3.34 86.38 0.29 4.95 16
15 C 0.10 3.28 3.22 30.59 0.10 3.38 16
16 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16
17 O -0.56 -21.69 12.34 -148.98 -1.84 -23.52 16
18 C -0.12 -2.79 5.03 29.85 0.15 -2.64 16
19 C -0.04 -0.92 4.96 -19.86 -0.10 -1.02 16
20 C -0.12 -2.80 9.42 22.27 0.21 -2.59 16
21 C -0.08 -1.73 9.40 22.27 0.21 -1.52 16
22 C -0.21 -4.53 5.45 -19.87 -0.11 -4.64 16
23 C 0.51 11.04 3.36 71.23 0.24 11.28 16
24 F -0.18 -3.91 17.30 44.97 0.78 -3.13 16
25 F -0.18 -4.15 16.46 44.97 0.74 -3.41 16
26 F -0.18 -3.84 16.46 44.97 0.74 -3.10 16
27 C -0.07 -1.45 9.40 22.27 0.21 -1.24 16
28 C -0.12 -2.48 9.70 22.27 0.22 -2.26 16
29 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16
30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16
31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16
33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16
34 H 0.07 2.16 8.06 -2.39 -0.02 2.14 16
35 H 0.06 2.25 8.05 -2.38 -0.02 2.23 16
36 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16
37 H 0.07 2.33 7.13 -2.39 -0.02 2.31 16
38 H 0.04 1.56 4.37 -2.39 -0.01 1.55 16
39 H 0.37 14.19 9.05 -74.05 -0.67 13.52 16
40 H 0.10 2.06 8.09 -2.39 -0.02 2.05 16
41 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16
42 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16
43 H 0.14 2.79 7.60 -2.91 -0.02 2.77 16
44 H 0.15 2.32 7.60 -2.91 -0.02 2.30 16
45 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16
Total: -1.00 -65.40 384.62 4.84 -60.56
By element:
Atomic # 1 Polarization: 22.46 SS G_CDS: 0.19 Total: 22.65 kcal
Atomic # 6 Polarization: -3.05 SS G_CDS: 4.86 Total: 1.82 kcal
Atomic # 7 Polarization: -81.08 SS G_CDS: -1.03 Total: -82.11 kcal
Atomic # 8 Polarization: -35.00 SS G_CDS: -3.25 Total: -38.25 kcal
Atomic # 9 Polarization: -11.89 SS G_CDS: 2.26 Total: -9.63 kcal
Atomic # 14 Polarization: 43.15 SS G_CDS: 1.81 Total: 44.96 kcal
Total: -65.40 4.84 -60.56 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000459540665.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -154.999 kcal
(2) G-P(sol) polarization free energy of solvation -65.400 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.398 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.563 kcal
(6) G-S(sol) free energy of system = (1) + (5) -215.562 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds