Wall clock time and date at job start Wed Apr 1 2020 05:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99940 * 2 1 4 4 C 1.53007 * 109.47107 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46895 * 62.47022 * 4 3 2 6 6 C 1.36940 * 120.00352 * 88.46235 * 5 4 3 7 7 H 1.07997 * 119.99459 * 37.57959 * 6 5 4 8 8 C 1.38808 * 120.00097 * 217.30376 * 6 5 4 9 9 N 1.31620 * 120.00078 * 211.70194 * 8 6 5 10 10 Si 1.86802 * 119.99916 * 31.71139 * 8 6 5 11 11 H 1.48501 * 109.47173 * 88.49959 * 10 8 6 12 12 H 1.48507 * 109.46629 * 208.49450 * 10 8 6 13 13 H 1.48496 * 109.47300 * 328.49464 * 10 8 6 14 14 C 1.46500 * 119.99763 * 268.46976 * 5 4 3 15 15 C 1.53001 * 109.47144 * 274.60038 * 14 5 4 16 16 H 1.08997 * 109.46651 * 59.99950 * 15 14 5 17 17 O 1.42903 * 109.47162 * 300.00383 * 15 14 5 18 18 C 1.52998 * 109.47343 * 179.97438 * 15 14 5 19 19 C 1.50696 * 109.47226 * 184.99932 * 18 15 14 20 20 C 1.38238 * 120.00422 * 269.73176 * 19 18 15 21 21 C 1.38233 * 120.00060 * 179.78721 * 20 19 18 22 22 C 1.38233 * 120.00186 * 0.46217 * 21 20 19 23 23 C 1.50696 * 120.00159 * 179.79077 * 22 21 20 24 24 F 1.39897 * 109.47114 * 269.97826 * 23 22 21 25 25 F 1.39902 * 109.47180 * 29.97716 * 23 22 21 26 26 F 1.39902 * 109.47165 * 149.97545 * 23 22 21 27 27 C 1.38237 * 119.99636 * 359.76667 * 22 21 20 28 28 C 1.38230 * 120.00521 * 0.02562 * 27 22 21 29 29 H 1.09000 * 109.47162 * 59.99743 * 1 2 3 30 30 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47102 * 300.00080 * 1 2 3 32 32 H 1.09001 * 109.46870 * 60.00223 * 3 2 1 33 33 H 1.08996 * 109.47889 * 300.00347 * 3 2 1 34 34 H 1.08994 * 109.47160 * 302.46855 * 4 3 2 35 35 H 1.09005 * 109.47052 * 182.46431 * 4 3 2 36 36 H 0.96998 * 120.00144 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47576 * 34.60393 * 14 5 4 38 38 H 1.09002 * 109.47049 * 154.60121 * 14 5 4 39 39 H 0.96706 * 113.99923 * 299.99563 * 17 15 14 40 40 H 1.09001 * 109.47189 * 305.00511 * 18 15 14 41 41 H 1.09003 * 109.46963 * 65.00378 * 18 15 14 42 42 H 1.07995 * 119.99456 * 359.97438 * 20 19 18 43 43 H 1.08003 * 120.00093 * 180.25186 * 21 20 19 44 44 H 1.08000 * 119.99806 * 180.02562 * 27 22 21 45 45 H 1.07995 * 120.00554 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9723 0.5094 -1.2239 6 6 4.2294 1.2392 -2.3538 7 1 4.6998 2.2082 -2.2753 8 6 3.8907 0.7310 -3.6003 9 7 4.6169 1.0359 -4.6548 10 14 2.4040 -0.3855 -3.7812 11 1 1.1934 0.4383 -4.0283 12 1 2.6154 -1.3099 -4.9240 13 1 2.2214 -1.1724 -2.5352 14 6 4.1339 -0.9465 -1.2397 15 6 5.5287 -1.3104 -0.7266 16 1 5.6483 -0.9426 0.2924 17 8 6.5168 -0.7123 -1.5680 18 6 5.6973 -2.8310 -0.7425 19 6 7.0219 -3.1961 -0.1236 20 6 8.1499 -3.2999 -0.9159 21 6 9.3658 -3.6304 -0.3475 22 6 9.4520 -3.8665 1.0118 23 6 10.7766 -4.2315 1.6308 24 9 10.9304 -5.6219 1.6171 25 9 11.8120 -3.6405 0.8987 26 9 10.8171 -3.7707 2.9511 27 6 8.3230 -3.7673 1.8034 28 6 7.1079 -3.4326 1.2357 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 3.8537 0.6062 0.8679 35 1 3.9787 2.1795 0.0448 36 1 4.3800 0.6810 -5.5259 37 1 3.3802 -1.4028 -0.5979 38 1 4.0143 -1.3143 -2.2588 39 1 6.4700 -0.9946 -2.4918 40 1 4.8905 -3.2920 -0.1727 41 1 5.6661 -3.1893 -1.7715 42 1 8.0817 -3.1198 -1.9786 43 1 10.2479 -3.7075 -0.9659 44 1 8.3903 -3.9514 2.8655 45 1 6.2259 -3.3555 1.8540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459540665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:07 Heat of formation + Delta-G solvation = -215.561983 kcal Electronic energy + Delta-G solvation = -31138.554623 eV Core-core repulsion = 26320.377788 eV Total energy + Delta-G solvation = -4818.176835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.18159 -48.70017 -48.64903 -40.61407 -39.22453 -38.30639 -36.40579 -34.19004 -33.71781 -32.03589 -31.48222 -30.19033 -28.08417 -27.15018 -25.89040 -24.84863 -23.87852 -23.12853 -21.90037 -21.76802 -19.52161 -19.42886 -19.37827 -18.93539 -17.50348 -17.15141 -16.92682 -16.77390 -16.50602 -16.17137 -15.84597 -15.76645 -15.61934 -15.47827 -15.38913 -15.22446 -15.11111 -15.06980 -14.89423 -14.81417 -14.53971 -14.34531 -14.27578 -13.62214 -13.43453 -13.22027 -12.95214 -12.88504 -12.69469 -12.52866 -12.34853 -12.23170 -12.00121 -11.97232 -11.88482 -11.74296 -11.17168 -10.88200 -10.51061 -10.40068 -9.98369 -9.84788 -8.57961 -8.12919 -5.36490 -0.03229 0.35619 1.37949 1.48999 1.61964 1.66027 2.51078 2.52626 2.72964 3.01888 3.02770 3.12372 3.41931 3.46613 3.75533 3.82457 3.93896 3.97076 4.23262 4.35250 4.40751 4.42938 4.46017 4.48421 4.57642 4.59498 4.65824 4.68234 4.71266 4.81622 4.82328 4.98359 5.01818 5.03750 5.15990 5.21395 5.23396 5.27465 5.37731 5.64075 5.85538 6.02997 6.28174 6.41881 7.02153 7.16370 7.77932 8.22467 9.06963 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.002667 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.064960 B =10497.882360 C =11313.389856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.045 3.955 4 C 0.146 3.854 5 N -0.596 5.596 6 C -0.238 4.238 7 H 0.032 0.968 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.899 3.101 11 H -0.311 1.311 12 H -0.306 1.306 13 H -0.225 1.225 14 C 0.124 3.876 15 C 0.102 3.898 16 H 0.085 0.915 17 O -0.559 6.559 18 C -0.115 4.115 19 C -0.039 4.039 20 C -0.117 4.117 21 C -0.077 4.077 22 C -0.206 4.206 23 C 0.513 3.487 24 F -0.181 7.181 25 F -0.182 7.182 26 F -0.179 7.179 27 C -0.073 4.073 28 C -0.123 4.123 29 H 0.024 0.976 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.258 0.742 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.370 0.630 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.151 0.849 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 -12.458 14.553 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.034 4.034 4 C 0.020 3.980 5 N -0.317 5.317 6 C -0.368 4.368 7 H 0.049 0.951 8 C -0.198 4.198 9 N -0.576 5.576 10 Si 0.728 3.272 11 H -0.241 1.241 12 H -0.234 1.234 13 H -0.148 1.148 14 C -0.002 4.002 15 C 0.040 3.960 16 H 0.103 0.897 17 O -0.363 6.363 18 C -0.153 4.153 19 C -0.040 4.040 20 C -0.135 4.135 21 C -0.095 4.095 22 C -0.207 4.207 23 C 0.459 3.541 24 F -0.162 7.162 25 F -0.164 7.164 26 F -0.161 7.161 27 C -0.091 4.091 28 C -0.141 4.141 29 H 0.042 0.958 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.216 0.784 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.154 0.846 43 H 0.160 0.840 44 H 0.169 0.831 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.438 -12.353 14.993 19.728 hybrid contribution -0.843 -0.089 -1.372 1.612 sum 2.595 -12.442 13.622 18.630 Atomic orbital electron populations 1.22835 0.81098 1.03179 0.99913 1.87853 1.20080 1.28733 1.95343 1.23282 0.96868 0.84204 0.99002 1.21121 0.90217 0.97579 0.89102 1.43901 1.76900 1.02485 1.08433 1.18418 1.31551 1.02415 0.84371 0.95071 1.25772 0.99337 0.99675 0.95052 1.70145 1.37906 1.48996 1.00524 0.86633 0.82903 0.79507 0.78198 1.24053 1.23391 1.14793 1.21947 0.95049 0.84130 0.99041 1.22499 0.89285 0.89732 0.94434 0.89719 1.86522 1.55011 1.71991 1.22816 1.21439 0.94633 0.96919 1.02330 1.20175 0.95602 0.93990 0.94189 1.21202 0.91749 0.99480 1.01094 1.21057 0.99087 0.96168 0.93161 1.20001 0.92641 1.11900 0.96162 1.18304 0.85413 0.74394 0.75955 1.93209 1.96325 1.30370 1.96302 1.93180 1.61845 1.83984 1.77344 1.93176 1.96843 1.88720 1.37324 1.21112 0.91162 0.96192 1.00626 1.21300 0.98385 0.99983 0.94403 0.95773 0.88804 0.92399 0.91675 0.95882 0.91257 0.92008 0.93288 0.91548 0.94413 0.78380 0.87870 0.90207 0.84648 0.84031 0.83140 0.82829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.40 -13.31 9.50 -148.98 -1.41 -14.73 16 3 C 0.05 1.49 6.29 71.98 0.45 1.95 16 4 C 0.15 5.22 6.10 86.38 0.53 5.75 16 5 N -0.60 -25.72 1.90 -701.99 -1.33 -27.05 16 6 C -0.24 -12.65 9.41 84.03 0.79 -11.86 16 7 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 8 C 0.00 -0.06 5.06 84.86 0.43 0.37 16 9 N -0.93 -55.35 13.97 21.65 0.30 -55.05 16 10 Si 0.90 43.15 26.42 68.60 1.81 44.96 16 11 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 12 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 13 H -0.23 -9.85 5.51 99.48 0.55 -9.30 16 14 C 0.12 4.66 3.34 86.38 0.29 4.95 16 15 C 0.10 3.28 3.22 30.59 0.10 3.38 16 16 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 17 O -0.56 -21.69 12.34 -148.98 -1.84 -23.52 16 18 C -0.12 -2.79 5.03 29.85 0.15 -2.64 16 19 C -0.04 -0.92 4.96 -19.86 -0.10 -1.02 16 20 C -0.12 -2.80 9.42 22.27 0.21 -2.59 16 21 C -0.08 -1.73 9.40 22.27 0.21 -1.52 16 22 C -0.21 -4.53 5.45 -19.87 -0.11 -4.64 16 23 C 0.51 11.04 3.36 71.23 0.24 11.28 16 24 F -0.18 -3.91 17.30 44.97 0.78 -3.13 16 25 F -0.18 -4.15 16.46 44.97 0.74 -3.41 16 26 F -0.18 -3.84 16.46 44.97 0.74 -3.10 16 27 C -0.07 -1.45 9.40 22.27 0.21 -1.24 16 28 C -0.12 -2.48 9.70 22.27 0.22 -2.26 16 29 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 2.16 8.06 -2.39 -0.02 2.14 16 35 H 0.06 2.25 8.05 -2.38 -0.02 2.23 16 36 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.07 2.33 7.13 -2.39 -0.02 2.31 16 38 H 0.04 1.56 4.37 -2.39 -0.01 1.55 16 39 H 0.37 14.19 9.05 -74.05 -0.67 13.52 16 40 H 0.10 2.06 8.09 -2.39 -0.02 2.05 16 41 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 42 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 43 H 0.14 2.79 7.60 -2.91 -0.02 2.77 16 44 H 0.15 2.32 7.60 -2.91 -0.02 2.30 16 45 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -65.40 384.62 4.84 -60.56 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.19 Total: 22.65 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 4.86 Total: 1.82 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -1.03 Total: -82.11 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -3.25 Total: -38.25 kcal Atomic # 9 Polarization: -11.89 SS G_CDS: 2.26 Total: -9.63 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.81 Total: 44.96 kcal Total: -65.40 4.84 -60.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459540665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.999 kcal (2) G-P(sol) polarization free energy of solvation -65.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds