Wall clock time and date at job start Wed Apr 1 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 113.99837 * 2 1 4 4 C 1.53003 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.77998 * 313.72772 * 4 3 2 6 6 C 1.53237 * 113.38225 * 183.01527 * 4 3 2 7 7 C 1.53497 * 83.43041 * 219.29234 * 6 4 3 8 8 N 1.47069 * 113.46232 * 84.50874 * 4 3 2 9 9 C 1.34771 * 136.06115 * 321.93191 * 8 4 3 10 10 O 1.21726 * 119.99815 * 359.63216 * 9 8 4 11 11 C 1.46259 * 120.00557 * 179.63633 * 9 8 4 12 12 C 1.35020 * 120.00522 * 173.52053 * 11 9 8 13 13 C 1.46965 * 119.99626 * 346.48580 * 12 11 9 14 14 C 1.40030 * 120.08193 * 317.02818 * 13 12 11 15 15 C 1.37643 * 119.99963 * 179.97438 * 14 13 12 16 16 C 1.39059 * 120.16783 * 0.02562 * 15 14 13 17 17 O 1.35605 * 119.92366 * 179.97438 * 16 15 14 18 18 C 1.34762 * 117.00033 * 355.10144 * 17 16 15 19 19 H 1.07997 * 120.00067 * 5.04465 * 18 17 16 20 20 C 1.38709 * 120.00037 * 185.03699 * 18 17 16 21 21 N 1.31519 * 119.99876 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00229 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46984 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47160 * 120.00272 * 22 20 18 25 25 H 1.48500 * 109.47532 * 240.00413 * 22 20 18 26 26 C 1.39623 * 120.15180 * 0.02562 * 16 15 14 27 27 O 1.35954 * 119.99911 * 179.97438 * 26 16 15 28 28 C 1.42899 * 117.00289 * 179.97438 * 27 26 16 29 29 C 1.38075 * 120.00099 * 0.22805 * 26 16 15 30 30 H 1.09004 * 109.47728 * 59.99672 * 1 2 3 31 31 H 1.09009 * 109.47499 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47189 * 299.99465 * 1 2 3 33 33 H 1.09004 * 109.46953 * 60.00357 * 3 2 1 34 34 H 1.08998 * 109.47561 * 300.00448 * 3 2 1 35 35 H 1.09002 * 114.32149 * 105.66370 * 6 4 3 36 36 H 1.08995 * 114.20218 * 332.92045 * 6 4 3 37 37 H 1.08995 * 113.47172 * 271.12211 * 7 6 4 38 38 H 1.09001 * 113.51797 * 140.68314 * 7 6 4 39 39 H 1.08002 * 119.99234 * 353.51765 * 11 9 8 40 40 H 1.07994 * 120.00190 * 166.48595 * 12 11 9 41 41 H 1.08001 * 119.99600 * 0.02562 * 14 13 12 42 42 H 1.08007 * 119.91716 * 179.97438 * 15 14 13 43 43 H 0.97002 * 120.00205 * 179.97438 * 21 20 18 44 44 H 1.08991 * 109.47352 * 180.02562 * 28 27 26 45 45 H 1.09001 * 109.46582 * 59.99999 * 28 27 26 46 46 H 1.09004 * 109.47277 * 300.00676 * 28 27 26 47 47 H 1.08003 * 120.08248 * 179.72993 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9016 0.4587 0.7253 6 6 4.2525 2.5368 0.0733 7 6 5.2169 1.8809 -0.9247 8 7 4.1084 1.0100 -1.3438 9 6 3.7656 0.3479 -2.4665 10 8 2.7441 -0.3134 -2.4952 11 6 4.6209 0.4240 -3.6505 12 6 4.3494 -0.3405 -4.7299 13 6 3.3939 -1.4518 -4.6215 14 6 3.4269 -2.2998 -3.5077 15 6 2.5309 -3.3398 -3.4077 16 6 1.5916 -3.5519 -4.4110 17 8 0.7115 -4.5784 -4.3077 18 6 0.8658 -5.4136 -3.2614 19 1 1.6107 -5.2038 -2.5082 20 6 0.0677 -6.5428 -3.1519 21 7 -0.8392 -6.7986 -4.0694 22 14 0.2810 -7.7003 -1.7014 23 1 1.3597 -7.1914 -0.8166 24 1 -0.9903 -7.7764 -0.9377 25 1 0.6430 -9.0528 -2.1962 26 6 1.5534 -2.7111 -5.5250 27 8 0.6342 -2.9216 -6.5043 28 6 0.6519 -2.0226 -7.6149 29 6 2.4526 -1.6690 -5.6346 30 1 -0.3635 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.6885 1.8463 0.8901 34 1 1.6885 1.8464 -0.8899 35 1 4.6961 2.7573 1.0443 36 1 3.6811 3.3688 -0.3382 37 1 6.0355 1.3423 -0.4474 38 1 5.5578 2.5571 -1.7087 39 1 5.4697 1.0917 -3.6614 40 1 4.8344 -0.1352 -5.6727 41 1 4.1550 -2.1373 -2.7267 42 1 2.5578 -3.9934 -2.5482 43 1 -1.3971 -7.5884 -3.9930 44 1 -0.1301 -2.3017 -8.3209 45 1 1.6225 -2.0738 -8.1083 46 1 0.4768 -1.0061 -7.2624 47 1 2.4270 -1.0205 -6.4978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492852730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:22 Heat of formation + Delta-G solvation = -33.825159 kcal Electronic energy + Delta-G solvation = -31172.434449 eV Core-core repulsion = 26903.995055 eV Total energy + Delta-G solvation = -4268.439395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.50643 -39.46017 -38.02953 -37.39445 -37.16431 -35.79800 -32.85044 -32.06037 -30.34742 -29.37646 -29.02500 -28.23773 -26.34052 -25.96879 -25.27656 -23.70551 -23.06561 -21.76027 -21.39380 -20.03939 -18.47216 -17.92033 -17.58466 -16.68523 -16.42832 -16.17301 -16.01927 -15.58116 -15.17492 -15.00089 -14.85721 -14.51365 -14.21832 -13.85476 -13.78854 -13.45535 -13.34818 -13.27292 -13.23290 -12.71291 -12.49088 -12.39184 -12.18059 -12.01921 -11.71374 -11.60336 -11.37416 -11.27370 -11.05923 -10.96841 -10.88097 -10.83419 -10.53214 -10.39142 -10.26557 -9.49342 -9.39302 -9.20031 -9.03710 -8.59551 -8.56244 -7.64408 -6.57678 -6.37684 -3.89754 1.26632 2.40222 2.73484 2.93736 3.19032 3.19407 3.25478 3.66886 3.84367 4.02936 4.16718 4.21405 4.60295 4.70771 4.81813 4.99859 5.10465 5.15289 5.17508 5.18882 5.22451 5.27265 5.28884 5.41904 5.45186 5.50859 5.58178 5.60912 5.66134 5.66626 5.78686 5.87855 5.93122 5.95940 5.98134 6.04947 6.32655 6.40552 6.52958 6.67599 6.80034 7.10431 7.24727 7.34286 7.36152 7.54578 7.78031 7.95275 8.04890 8.33637 8.65689 9.07012 9.80215 10.79598 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.003712 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.861444 B = 7540.842378 C = 9254.405510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.368 6.368 3 C 0.062 3.938 4 C 0.138 3.862 5 H 0.096 0.904 6 C -0.150 4.150 7 C 0.101 3.899 8 N -0.647 5.647 9 C 0.563 3.437 10 O -0.486 6.486 11 C -0.255 4.255 12 C 0.021 3.979 13 C -0.156 4.156 14 C -0.008 4.008 15 C -0.218 4.218 16 C 0.153 3.847 17 O -0.159 6.159 18 C -0.386 4.386 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.855 5.855 22 Si 0.940 3.060 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.039 3.961 27 O -0.305 6.305 28 C 0.033 3.967 29 C -0.136 4.136 30 H 0.038 0.962 31 H 0.088 0.912 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.131 0.869 43 H 0.269 0.731 44 H 0.089 0.911 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.239 19.573 5.384 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C -0.016 4.016 4 C 0.034 3.966 5 H 0.114 0.886 6 C -0.188 4.188 7 C -0.023 4.023 8 N -0.387 5.387 9 C 0.355 3.645 10 O -0.359 6.359 11 C -0.276 4.276 12 C 0.001 3.999 13 C -0.157 4.157 14 C -0.027 4.027 15 C -0.238 4.238 16 C 0.098 3.902 17 O -0.061 6.061 18 C -0.462 4.462 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.489 5.489 22 Si 0.765 3.235 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.006 4.006 27 O -0.220 6.220 28 C -0.063 4.063 29 C -0.155 4.155 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.117 0.883 42 H 0.148 0.852 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.167 18.468 4.946 21.655 hybrid contribution 0.172 0.090 0.686 0.713 sum 10.339 18.558 5.632 21.978 Atomic orbital electron populations 1.22669 0.81126 1.03108 0.98936 1.88028 1.19459 1.26016 1.95111 1.22642 0.92730 0.86360 0.99871 1.22525 0.92999 0.95820 0.85261 0.88623 1.23437 0.98276 0.96497 1.00549 1.22816 0.91490 0.91562 0.96386 1.49828 1.25731 1.51818 1.11288 1.18061 0.86717 0.78126 0.81569 1.91063 1.25585 1.37474 1.81815 1.22550 1.02996 1.06626 0.95437 1.22267 0.91624 0.89893 0.96093 1.18021 1.01328 0.98919 0.97411 1.20495 0.96435 0.92301 0.93478 1.20716 0.99570 1.02672 1.00797 1.18806 0.90369 0.89555 0.91509 1.83984 1.44444 1.32441 1.45262 1.21481 1.21094 1.02869 1.00784 0.88875 1.25312 0.95540 0.96985 0.98733 1.70067 1.19439 1.26439 1.32981 0.85655 0.78639 0.79472 0.79747 1.18982 1.20140 1.20130 1.17922 0.94610 0.98094 0.89933 1.86219 1.53138 1.52988 1.29625 1.22839 1.01581 0.93424 0.88455 1.20666 0.97622 0.97808 0.99428 0.94302 0.89385 0.94949 0.93001 0.93146 0.89177 0.88767 0.90037 0.90517 0.86452 0.86104 0.88338 0.85155 0.92091 0.89288 0.93752 0.93829 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 11.01 101.05 1.11 1.67 16 2 O -0.37 -6.20 9.83 -43.67 -0.43 -6.62 16 3 C 0.06 0.78 5.38 37.16 0.20 0.98 16 4 C 0.14 1.51 4.32 -72.53 -0.31 1.20 16 5 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 6 C -0.15 -0.98 8.01 -26.35 -0.21 -1.19 16 7 C 0.10 0.77 8.32 -8.50 -0.07 0.70 16 8 N -0.65 -8.23 3.57 -179.31 -0.64 -8.87 16 9 C 0.56 9.21 6.91 -13.04 -0.09 9.12 16 10 O -0.49 -10.18 11.79 -3.27 -0.04 -10.22 16 11 C -0.26 -3.53 9.70 -37.50 -0.36 -3.89 16 12 C 0.02 0.31 9.80 -37.19 -0.36 -0.05 16 13 C -0.16 -3.02 4.50 -105.04 -0.47 -3.50 16 14 C -0.01 -0.18 6.68 -39.13 -0.26 -0.44 16 15 C -0.22 -5.34 9.14 -39.49 -0.36 -5.70 16 16 C 0.15 4.10 6.67 -38.76 -0.26 3.84 16 17 O -0.16 -4.90 9.52 -13.93 -0.13 -5.03 16 18 C -0.39 -11.42 9.48 30.91 0.29 -11.12 16 19 H 0.09 2.58 5.18 -52.49 -0.27 2.31 16 20 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 21 N -0.86 -26.07 13.67 55.48 0.76 -25.32 16 22 Si 0.94 21.39 29.55 -169.99 -5.02 16.36 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.04 0.94 6.70 -39.12 -0.26 0.67 16 27 O -0.31 -7.18 10.28 -34.21 -0.35 -7.53 16 28 C 0.03 0.54 9.81 101.05 0.99 1.53 16 29 C -0.14 -2.74 8.77 -38.99 -0.34 -3.08 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.34 8.14 -51.92 -0.42 0.91 16 32 H 0.03 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.12 1.22 7.98 -52.49 -0.42 0.80 16 40 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.10 1.99 7.08 -52.49 -0.37 1.62 16 42 H 0.13 3.20 5.61 -52.48 -0.29 2.91 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.04 0.63 7.65 -51.93 -0.40 0.24 16 46 H 0.04 0.65 7.67 -51.93 -0.40 0.25 16 47 H 0.12 1.93 6.28 -52.48 -0.33 1.60 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -37.94 393.59 -7.48 -45.43 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.69 Total: 4.09 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -0.87 Total: -8.23 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.12 Total: -34.18 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.95 Total: -29.40 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.94 -7.48 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492852730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.603 kcal (2) G-P(sol) polarization free energy of solvation -37.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds